AMCG00017428 (lrrtm1,LOC107706126,LOC107551676,LOC107689474,LOC107558618,LOC107711523)


Basic Information

Item Value
gene id AMCG00017428
gene name lrrtm1,LOC107706126,LOC107551676,LOC107689474,LOC107558618,LOC107711523
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 3567260 ~ 3568720 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017428
ATGTGTCCAAAGCTTTGCCGCTGCGATGGCAGGCTATTGTACTGCGAGTCTTTGAATCTGACAGAAATGCCTCGCAACCTCTCGGGTATCATGGGCTTGTCTCTGCGGTACAACAGCCTTTCAGAGCTGCGTGACGGACAATTTGTGGGGTTAATGCAGCTCACATGGCTCTATCTGGATCACAATCACATCTACTCTGTGGAGGAGAATGCTTTCCAGAGGCTGCGCAGGGTTAAAGAGCTCATTCTCAGTTCCAACAAGATCGAGACCCTCCCCAACTCCACTTTCAGCCCCATGCCCAACCTGCGCAATTTGGATTTATCTTACAACAACCTACAGGCATTGGAGCCAGACCTTTTCCATGGCCTTAGGAAGCTCACCACTTTACACTTGCGGTCCAACGCACTCAAATACGTGCCAGTGAGGATTTTCCAGGACTGCCGTAGCATGCAGTTTCTAGACTTGGGCTACAACCAACTGCAGAGCCTGGCTCGTAACTCGTTCGCAGGATTGTTTAAGCTCACCGAGCTACACCTGGAGCACAATGAACTGGTCAAAGTCAACCTCGCCCACTTTCCCCGGCTCATCTCGCTGCGCACCCTCTATATGCGCAGGAATAAAGCCACCATCGTGGTCAGCACACTTGACTGGACTTGGAATTTTCTAGAAAAAATCGACTTTTCAGGCAATGAGATAGAATATATCGAACCTCACGTTTTCGAAAGTGTGCCTAACCTGAAATCACTGCAGTTGGATTCCAACAGGCTAACATACATTGATCAAAGGATTTTGGATTCCTGGAGCTCCCTCACTAGCATCACCCTGTCTGGTAATGAGTGGGAGTGCAGCAGGAACGTCTGTGCTCTGGCCTCCTGGCTCAGCAATTTCCAGGGGCAGCATGACAATACCTTACTGTGTGCCAGCCCGGAAATTGCACAGGGTGAGGATGTTTTAGATGCTGTCTATGCTTTCCAGCTCTGTGAAGATCCTGTAGATGCCACGGctgacacagagacatacaCTGTCACCAAGGATGGGGCAAGGGTTTACAGTAATGAGGGACCCACCATAAGCCCTTATGATCTGCAGGACACAGAAGGGGAAGTGGTGACCAACTCGTTTACAGTGACCGTGGCAAATGAAGACCATGAAAACACTATGCAGATCCACAAGGTGGTTACAGGGACCATGGCGCTCATTTTCTCCTTCCTCATCGTAGTGTTAATGTTGTACGTTTCCTGGAAGTGCTTTCCTGCCAGTGTGAGACAAATGAGGCAGTGCTTCACCACCCAACGCcgtaaacagaaacaaaaacaaaccatgcaACAAATGTCAGCCATGACTGCCCAGGAGTACTATGTCGATTACAAACCCAACCACATCGAAGGTGCCCTGGTCATCATCAATGAGTATGGATCTTGCACCTGTCAACAACAGCCATCTAGAGAGTGTGAAGTGTGA

Function

symbol description
lrrtm1 Enables identical protein binding activity. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in extracellular matrix and extracellular space. Is expressed in several structures, including anterior neural keel; anterior neural rod; basal plate midbrain region; immature eye; and nervous system. Orthologous to human LRRTM1 (leucine rich repeat transmembrane neuronal 1).

NR:

description
PREDICTED: leucine-rich repeat transmembrane neuronal protein 1

GO:

id name namespace
GO:0042802 identical protein binding molecular_function

KEGG:

id description
K16665 LRRTM1_2; leucine-rich repeat transmembrane neuronal protein 1/2

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017428 True 1461 mRNA 0.49 1 3567260 3568720

Neighbor

gene id symbol gene type direction distance location
AMCG00017427 NA coding upstream 85538 3275663 ~ 3481722 (+)
AMCG00017423 suclg1,LOC107674246,LOC106602756 coding upstream 840433 2713157 ~ 2726827 (+)
AMCG00017420 NA coding upstream 854787 2709071 ~ 2712473 (+)
AMCG00017421 NA coding upstream 858617 2696109 ~ 2708643 (+)
AMCG00017424 NA coding upstream 883752 2674951 ~ 2683508 (+)
AMCG00017429 NA coding downstream 620528 4189248 ~ 4199454 (+)
AMCG00017439 rnf24,LOC107689472 coding downstream 814612 4383332 ~ 4384747 (+)
AMCG00017449 NA coding downstream 1059495 4628215 ~ 4633610 (+)
AMCG00017450 NA coding downstream 1121158 4689878 ~ 4691955 (+)
AMCG00017451 NA coding downstream 1292654 4861374 ~ 4868470 (+)
G90248 NA non-coding upstream 329534 3237445 ~ 3237726 (+)
G90149 NA non-coding upstream 1038459 2491907 ~ 2528801 (+)
G90144 NA non-coding upstream 1063096 2461882 ~ 2504164 (+)
G90070 NA non-coding upstream 1562654 2003038 ~ 2004606 (+)
G90042 NA non-coding upstream 1632476 1929142 ~ 1934784 (+)
G90284 NA non-coding downstream 329098 3897818 ~ 3898125 (+)
G90333 NA non-coding downstream 743538 4312258 ~ 4312475 (+)
G90337 NA non-coding downstream 761650 4330370 ~ 4330583 (+)
G90338 NA non-coding downstream 816521 4385241 ~ 4390541 (+)
G90413 NA non-coding downstream 1129218 4697938 ~ 4710074 (+)
AMCG00017422 leprotl1,LOC103152176 other upstream 871807 2687420 ~ 2695453 (+)
AMCG00017388 LOC108267694,LOC106608525 other upstream 3355324 207586 ~ 211936 (+)
AMCG00017386 dctn1,LOC101464740 other upstream 3468863 48007 ~ 98397 (+)
AMCG00017445 NA other downstream 1024082 4592802 ~ 4606571 (+)
AMCG00017446 NA other downstream 1093905 4662625 ~ 4688223 (+)
AMCG00017486 NA other downstream 3161018 6729738 ~ 7188643 (+)
G90877 NA other downstream 4099463 7668183 ~ 7671850 (+)
G90881 NA other downstream 4123865 7692585 ~ 7693347 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_001414 lrrtm1 coding NC_007112.7 CM002885.2 42776553 ~ 42779075 (-)
grasscarp (Ctenopharyngodon idella) CI01000049_08933819_08935755 LRRTM1 coding CI01000049 null 8933701 ~ 8935930 (+)