CI01000049_08933819_08935755 (LRRTM1)


Basic Information

Item Value
gene id CI01000049_08933819_08935755
gene name LRRTM1
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000049
NCBI id null
chromosome length 9665442
location 8933701 ~ 8935930 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000049_08933819_08935755.mRNA
TTATAAATACATATCAACTGAAAGACTTGGGGAGTTACAAATCACAAAATCCAAAATGACCAAGATCTGAAAGATTCAATGGACTTTTTCTCTACGACACTGCAGGATATTCATGCTAATGGATTTCCTCCTAATTGGTCTGTACCTAAAGTGGCCGCTAAGGAAGCCCCCTGGGCTGATTCTGTGCTCCCTGGGCATTGTTCTGAAAATAGTTCCGTTGGTGGGAGGGAGCTGTCCGAGGCCGTGCCGATGCGACAACAAGCTGTTGTATTGTGAGGGGCTCAACCTGACCGACATCCCCCAAAATCTGAGCAGCGCCATTGGTTTGTCCCTGCGCGAGAATAACATCTCTGAGCTGCGGGAGGGGAACTTTGTGGGCCTGTCGCAGCTTACCTGGCTCTACTTGGATCATAACAATATTGAGATTGTGGAGGAGAGTGCCTTTGAAAGGCTGCGAAGGGTTAAAGAGTTGGATCTGAGCACCAATCGGATAGATAGCCTGCCCAACGGGACCTTTAGACCTCTGCCCAACCTGCGAATATTGGATTTATCCTATAACAGACTTCAGTCCTTGGAGCCAGACCTTTTCCATGGCCTTAGGAAGCTTACCAATTTACATTTGCGCTACAATGCCCTTAAATTCATCCCTGTGCGGATTTTCCAGGATTGCAGGAGCATGCAATTCCTGGATCTGGGTTACAACCAGCTGCAGAGCCTGGCACGTAATTCATTTGCCGGACTCTTCAAGCTCACTGAGCTGCATCTGGAGCACAACGAGTTGGTGAAAGTCAATCTGGCCCATTTTCCCCGCCTCATATCCCTGCGGACCCTCTACATGCGAAACAATAAGGCCACCATTGTGGTCAGCACCCTTGAATGGACCTGGGACCACTTGGAGAAGATTGACTTCTCCAACAATGAGATTGAGTACATTGAGCCACATGTTTTTGAGAGTGTGCCCAACCTTAACACTCTTATGCTGGACTCTAATAAACTCACTTATATAGATCAGCGGATTTTGGACTCATGGACATCCCTGAGCAGCATCTCTCTGTCAGGGAATGACTGGGAATGCAGCAGGAATGTCTGTGCCTTGGCTTCCTGGCTTAGCAACTTCCAGGGACAACGTGACAGTGGCCTGTTGTGCGCCAGCCCGGACATTGCACAGGGTGAGGACATTCTGGACGCCGTCTACGCTTTTCAGTTATGCGAGGACAATGTGGAAGCAACCACGCAGTCATTCACCGTCACCAGAAACCGGGCCAGAGGCTTCATATATGATGGCCCAACGAGAAATCCATACGACCTGCAGGACATGGAGGGTGGGGAAGTGGTGACCAACTCCTTAACAGTGACTGCATCCACTGATGACCTGGAGAGCACCATGCAGATTCACAAAGTGGTGACAGGCACCATGGCCCTCATTTTCTCTTTCCTGATCATGGTCCTCATGCTCTATGTGTCCTGGAAATGTTTCCCAGCGGGCATCAGGCAGTTGAGGCAGTGCTTCACCAGCCAGCGTCGCAAGCAGAAGCAGAAGCAGACCATGCAACAGATGGCTACTACGTCTGCATCTGAGTACTACGTTGACTACAAACCCAACCATATTGAGGGGGCACTTGTCATCATCAATGAGTACGGCTCTTGCACGTGCCAGCAGCAGACATCTCGAGAGTGTGAGGATATTATAGGACTCTCTAAAGCTATCGAGGACATCCACAACAACATTTTTACCATGGGAACAAACATATGAACATCCAAAATTGGAAAGGAAAACAACAAAACAAAGAAACCCTTAAGAAAAACATAAAAGATTCTATGTAAAATATGTTAACAGCAGAAATGCAAGAGTAGGGATAAAAATGCAAGATGTTATCCTATTTCTTTTGTAATCTATGGAGAAAAAAAAGGAAAATACAAATGTTTAA

Function

symbol description
lrrtm1 Enables identical protein binding activity. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in extracellular matrix and extracellular space. Is expressed in several structures, including anterior neural keel; anterior neural rod; basal plate midbrain region; immature eye; and nervous system. Orthologous to human LRRTM1 (leucine rich repeat transmembrane neuronal 1).

GO:

id name namespace
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K16665 LRRTM1_2; leucine-rich repeat transmembrane neuronal protein 1/2

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000049_08933819_08935755.mRNA True 1928 mRNA 0.47 2 8933701 8935930

Neighbor

gene id symbol gene type direction distance location
CI01000049_08918472_08920408 LRRTM1 coding upstream 13118 8918354 ~ 8920583 (+)
CI01000049_08707784_08716438 NA coding upstream 217066 8706001 ~ 8716635 (+)
CI01000049_08454444_08471856 SUCLG1 coding upstream 461845 8454342 ~ 8471856 (+)
CI01000049_08426993_08448781 NA coding upstream 484627 8426993 ~ 8449074 (+)
CI01000049_08357834_08391102 NA coding upstream 542464 8357699 ~ 8394596 (+)
CI01000049_09421372_09430717 ADRA1D coding downstream 485289 9421219 ~ 9431606 (+)
CI01000049_09532855_09551543 RNF24 coding downstream 596925 9532855 ~ 9554478 (+)
G210369 NA non-coding upstream 272499 8660980 ~ 8661202 (+)
G210270 NA non-coding upstream 700748 8232719 ~ 8232953 (+)
G210241 NA non-coding upstream 701760 8231251 ~ 8231941 (+)
G210262 NA non-coding upstream 778641 8154659 ~ 8155060 (+)
G210545 NA non-coding downstream 82737 9018667 ~ 9018976 (+)
G210424 NA non-coding downstream 181117 9117047 ~ 9261427 (+)
G210625 NA non-coding downstream 263179 9199109 ~ 9228087 (+)
G210666 NA non-coding downstream 328119 9264049 ~ 9264288 (+)
G210674 NA non-coding downstream 344117 9280047 ~ 9280295 (+)
CI01000049_08326623_08329601 NA other upstream 603786 8326285 ~ 8329915 (+)
G210091 NA other upstream 1054845 7873750 ~ 7878856 (+)
CI01000049_07219171_07224229 NA other upstream 1636639 7218811 ~ 7224268 (+)
G209660 NA other upstream 2051671 6878133 ~ 6882030 (+)
CI01000049_04473766_04475768 GM10043, LSM6, SNRPF, BRAFLDRAFT_125735 other upstream 4457431 4473662 ~ 4476270 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00017428 lrrtm1,LOC107706126,LOC107551676,LOC107689474,LOC107558618,LOC107711523 coding CM030131.1 CM030131.1 3567260 ~ 3568720 (+)