CI01000049_09532855_09551543 (RNF24)


Basic Information

Item Value
gene id CI01000049_09532855_09551543
gene name RNF24
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000049
NCBI id null
chromosome length 9665442
location 9532855 ~ 9554478 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000049_09532855_09551543.mRNA
GTTAATGTGTCATCTGTCAAAACAGATATGTTGGTTAGTACAAATATTCAAAAGCTTTGCATGGGTAGAGCTGTAATGGACACAGACAGAGGAAGACAGGCAGAGACAGGGTGGGAAAATAAACAATCTGTTGGTGGTCAGTTATCCATGACCTTAGATTTACAGCATTACACTTTCAGGATGCCGAATATAGGGTTTCAGAACCTTCCCCTCAATATCTACATTGTTGTCTTTGGGACGGCCATTTTCGTCTTCATCCTCAGCCTACTCTTCTGCTGCTACCTGATTCGGTCCCTCTCACTCTGCTGCGAGAGTTTAAGCTTTCTTGTATTGGAGGTTTTTGAAAATGTTGTGTCACTCTCTGAACTAAAACAAAGATTTCTTTTGTCTAGGTTACGGCACCAGGCACACAAAGAGCTCTATGCATACAAGCAGGTTATTCAAAAGGAAAAAGTCAAAGAATTAAACTTGCATGAGGCCAGACTGACTTCATATGTGAGTGCTAATGAAATGCTAGCGACAATATTGAGGGCATTTGTGGAACTGAAAATAAACGGGTCAGTAGTCCCCTCGCTTGTACTAGTAATTCTGGATTGCACTTGCATATGTACTCAGACAAGAAGAAAACTAGCAAATGTGCCAGACAGTTGCCAAGATATGGATCCTCAGGTGGCAACCAGTGAGAACAGCATGGACATAAATATCACCGCATCAATTTGTGCGGTGTGTTTGGAGGAATTCAAGCAGAAAGATGAATTGGGAATCTGCCCGTGTAAACATGCCTTTCACAGAAAAAAATATTCTTACCTCTTTTCTGTAGACTATAAAAAGAGCAGAGATGCCAACATCTCACTCAGACTAACCCGAGATTCAGTCTCACTTTCCACATGGGCTTCCTGCAAGGAGATGCCCAGCTTCGCCAACACAACCAGCCCTGAGATATCATATGAGATCACTTTTGACTTGCTACCAGTAATAGTTCGGGTGCCTTATCAAATGGCTGGAGGTGAGGAAGGTATGCCCGCTGTGCAACATGCCCGTCTTGCAGCTGGCGCAGCAGCAGAGCATGTCCGAGCCTGTGCCCCCAATGCAGCAGCCTCTGCCCGGAGTGGAGAACCTGGTGTAGCCCCTCCTGTTTCTCCTAAAAATGTGACCACCACTACCTTCACACTCCCTCCTGTACAGCTTTTCTTCCTGTGGGATAATGAAGAAGAATTAAGTTTACATGGCCAAGCCATGTTTAAAGTAACCGTTCCACACCAAAGCACTTTTTTGAGGACACCAGTGAGAGGCAAAAAAATACAAGGACTAAAAATAACATAAAAAAATACTTTTTTAACATAAGTTTTTTTTTAACAAGCACTTTACACAAAGTCTACTCAAACCTAGTTGCTTGTGATAGTAGCAAGATCTTTTTTTATATTTTATGATTTCAGACTTTTTTAGTTGATGTACACAGAGCCACAGAGCAAACCATTGGTATTATTTTCATTAGAGAGGGTTATGTTTATACTGTATA
>TU240251
AGGGTGAGTAATTAATGACATAATTTTCATTTTTTGGTGAACTAACCCTTTTATCCAACTAGTTTTGGTAAGACTAGTCCACCAGCAAGACAAGCATAAAGTTGGTCTTTCCAGCAGAGATTGTAGCTTTCCTTTTCCTCTTAGCTTTCCAAGATGAAATGAATGAGTGCAGATGGTCTATTGACCTCTTTGTCGAATTAAACCGCTATTTTATCATGAACATCAAAGACTTTAATCAAGGACCACCAGATTGTAGAGTCGTGCGATTGTGTGGACATTCACAATATGATAGACGAGGGAGTCGTGAGCTCAAGTGGATCTGTGAAGGACGTCGTGATTCAGAGCAAACACACACAGTCGCACGTAGCAGCCATGCACCAGCTCCGACACACAAATGTGAAATGCCCCTGTGACTGGCGAACACACAATTAGAGAAGAAAAGGGGTGGGTGGGTGAGTGTTTGTCTGGCATAGTCATCCTCATGGGAAGAATATCGAAATTCACACACACGTTTGAGATTGAGCACTCAGTGTTAATAGCTGTACCAGTTTTATTACATTGCAGGGAAATGGTCACAAGGTGGTTTTCAACCTGATGAATTGTAGCACTAGCCTAATAGTGCATGAGAAATCATGACTGCCTGTAGTTGTCAAACAACAGTTCATCTTGAGGTGAGCCCACCTCAGGACCTAGACCGAAACACACTGTATGACTTTGGCAATGATTATATTTCTATGACTTCTTTCATCTAGCCATGACAACCTTTAGGGGCCATTCATACAGAATGCATTTTTTGTATTCTACCACGCTGCTTTTCCATAGTTTTTTGTAAACATGCGCAAGACGGACATGTTGCATCTTACGCATGACACGGCATTCTAAAAACACAGCGCTTAAGTTAAAAAAAATTCAACTTGGTTTTTGCATATTAATGAGTATAAACAAAAAAAAAAAAGTCCTAAAGTACACACTCCCTCTTCCTCACCCCTAAATTCCTTCAAAGGGAGTATCTGCACCTTTACCTGCTGGTCTCTTTCAAAATGTCAGTTTCTCTCCTAGACTGTGCTGCCTCTTTTACAGGTCCCTCTCACTCTGCTGCGAGAGTTTAAGCTTTCTTGTATTGGAGGTAAATTTTACAACACGTCTCCATGTTTTTTTTTTCTCATCTATCCAGCTCTCGTTTCACTTGAGACTTTTCTGAATATATATTATCTTTAATAAACTATATTCATTTCTGGATGTGATTGTAAGATACTGCAGTATTGTATGTTGTGTTCACTTGTGCCTTTCCTTTGTACAGGAAGTAATATATAATATATATATATATATATGTTTCTGTGTTTGTTTGTTTGTTTAATTAATTGTCATGTCTTCCAGAGAATTTAAATGAAAAAGGTTTCAGCAAAACAAACAATCATAAAAGGCCAAGATGAATGTCTTATAAGGCTAATTGGACTATTACTAATGTTCTAACAACCCTTCAGACATTAACAGTTCAGAATGTATGCTCGCACATTTGAGGCTAAATATAGTGTGTAAAGCGCTTGCTGGTTTTCTTTAAATAGCCTTTTTCTTACACTAGAGACTCTTCCATCATGCCTGACACATTCCAGTTATTTTCCACCAGGGTTCCTCTCTCACTTTCTCTCTCTCTGTCTGTGACACACACACTTGCTCAAGATCAAAATAGTGTTAAATGTAGACTGTCCATTGCTTGGCTGCCTCCATTTCTTAAATTCATGCCAAGAGTATCTGTATATAGTTCTTTTAAAGGGTCTGGCACCAGTCTGACAGTCACACTCGGTAAAGCATTGCAGCGGTGCGAGTGGGTAATGCCTGGGCAGTCTGGTTCAGACAGGCTATTAAAGTCGGGTCAAGCTTGATGAGACAATACAAGACCTAAATCACCCTAGAAAGACTCTAAAGATAGTTTAAACATACCAAGGCAGCCCACAGCACTGCTGGAACTGGACACAGCTATTGTCAAATAAGAGGAAGTTCTTTTTTTTTTTTATATATATATAAAAATGAGCCAGGAAATAGTCATTAGAAAGTGAATGGCAGTGTGTGTTTAGCAGGTTGATTTTTTTTTTGATTAAGCTCAAATGTAGTGAATAAAATATATATTCTGGTGGCATCCAGTGAAAAATGTAATATAGCAACACATACATTTAATATAAAATATGTAGTGAATCAGTATAGTTTTTTTTTTTTAAATGATCAAGTAATGCCTTATGGGTACTGAAGGCTACAGTTTGTCAAATTGTGACTAAAAAATAAGATCCAGGCATGTGTTGACCATATACAGCTAAAATATATAAACAGAGAAGCACATACAATGCATTTAAAACACTGGCTTTTAAAATGGACTGTATTTTAGTATCATGGTTTAACTTGATGATTTTGGCATTTGTTTGTATATAATTTGGTATTATGAATGTCTCTCCAGCACAGGTTTTTGAAAATGTTGTGTCACTCTCTGAACTAAAACAAAGATTTCTTTTGTCTAGGTTACGGCACCAGGCACACAAAGAGCTCTATGCATACAAGCAGGTTATTCAAAAGGAAAAAGTCAAAGAATTAAACTTGCATGAGATTTGTGCGGTGTGTTTGGAGGAATTCAAGCAGAAAGATGAATTGGGAATCTGCCCGTGTAAACATGCCTTTCACAGAAAGTGCCTTATCAAATGGCTGGAGGTGAGGAAGGTATGCCCGCTGTGCAACATGCCCGTCTTGCAGCTGGCGCAGCAGCAGAGCATGTCCGAGCCTGTGCCCCCAATGCAGCAGCCTCTGCCCGGAGTGGAGAACCTGGTGTAGCCCCTCCTGTTTCTCCTAAAAATGTGACCACCACTACCTTCACACTCCCTCCTGTACAGGTACACGCTCATATCCAAGGACAGACCGCAGGATTTATGCCCAGAGCCACGGTGACCTGTGACCTGCATATGTTCCTGTCCCGTCTTGGTGGCTTTATAATGGATTTTTTCCCAAATTACAATAATAGATGATTTACTCAATCTGTCTTATGTGGGTTTAGCTTTTCTTCCTGTGGGATAATGAAGAAGAATTAAGTTTACATGGCCAAGCCATGTTTAAAGTAACCGTTCCACACCAAAGCACTTTTTTGAGGACACCAGTGAGAGGCAAAAAAATACAAGGACTAAAAATAACATAAAAAAATACTTTTTTAACATAAGTTTTTTTTTAACAAGCACTTTACACAAAGTCTACTCAAACCTAGTTGCTTGTGATAGTAGCAAGATCTTTTTTTATATTTTATGATTTCAGACTTTTTTAGTTGATGTACACAGAGCCACAGAGCAAACCATTGGTATTATTTTCATTAGAGAGGGTTATGTTTATACTGTATATTAAAGGGACAGCAGCTCTCCAATGTGTATATGTTTGTTTGTGTTGTGACGGTCAGTAGGATGGCTGTATTGGTAGATACGGTTCGCTGCGACCTTTAGCTGGTGCCCAAAACTAATGTGAATGCAGAGTTTGTGTTATTAAGGTCAGGATGTGACCCAGCAGTATTTGATCTGTGTTCTGTGGATGCTTTATATTTGACATGCTTTTTAACTGAGGGGCTGTGTTAAATACACACAAACACACACACATGTCTGTAGCTTTGGGTTCAAGGGTGAATTTGATAAGAATTTTAAAGTACCCTAAAAAGCTAAAGGCAAAAGAAAAAACACTATTGTCACTCTTAGACTTCATTAGATATTCTAAATCATTCAGATTTTCCCAGCCAGTCTAAATAACATGATAATTATATAAATAATACCTTTTATTTTGTAAGGCCCCCTGCAATATGTATGATGTCGGCCTACACTTTGGGAACTGCTGCCATAAACCCCACCCGTTTCCATTAACTGTTCATAGTTGAAGCATTAGTCAGTTTCTGGCTTCAGTTTCCCAATCCACACACAGTATTGTTCAGTTTGTTCATCAGCTGCAGAGTTCTGCAGATCTGTTATAGAGTTACTGGAAATAGTTGCAAATGAAACAAGGTTTTAACCAAATTTAAACTGAACAAAATGTTCCAAAGTATTGTTTTGTGGTTTATCCTGTCTTTCATGGATTATTGTTACATAAATCTCCCAGGTTTTATGCCCCAGGTACTGTTGAGATGTATTATATTTTCTTAGTTATCACAAATCTCCCATGAAGCTGTGGCTCTATGCAAAGCAGTAAATGTGTGTGTGTGTCTGTGTGGTTCTCATATTGTGCTACATAGCTTTCTGAAAATATACTTGGCTTAAAGCCCTAGATCTGTCTCCAACAAATATTAATAAATGAAATATTGCTCTAGTAAGGCAAATCAAACTAGACACGCTACAGAAACAAACTCAGATCTGACCAGAAGTCACTGGGATTGGAAAATGCCCTCAGTACAGACCCAGTTGACATACACAGTCTAGTCTAGTATCATTCCAGCATCTTTCAGCATATCAGTGAATCAGTCCGGCACTTTGTAACACAGAATTTTCAGCCATTAAAATCAATGAGCAGCAGGTGGATGCTGTCAGCAGGATGGGGCGTTCTTTATTCTACATAATAGAATGGACGCTCTGGCTCTTTCCTGCTCTATAGTACTCCTGTTTTTTTTTGTTTTTTTTCAGGGTCATCCCACCAACCCTCTAGGGTCATGTTGGGTCTCTGTGCCCTCCATGTTAAGGCAGTCTAGGAAAGTATGTATAATATTACATATATGGGCTGGCCACAACACTTTAGAAATGATGCCAAATGTGGAAAAATTTTGTTGCTGAATTTGTAGTAGAATTATCTGACACAAGTAATGCTTTATGTAAACCCAAACTAAATCTGCACTGGTTTTATTTAAAGTGCTGTCTGGTCATGGATCGAATGTTGTGATATTCATTGCCCATGTTCTGCAGTGTGTCTGTGTTTTTGAGAGGCTAGATTCAGATTGTGAATTAAGTTAAGCTTATTTAATGAGGTTTTATTTTTTATTTATTTCTTTTCTCTTTTTCGCATTTGCTGTGTGTGTGAAGAAACTCTTGTGCATATTATCTAAAAAGAAAAAATGTAAAAAAAAAAAACAAACAAACTTTTTTTTGCTCTGGTACTTTGTCTTAACGAAGAGTAAAACACTGAGGGTTTACTTAAGACTTGTAATTCCTTATCACAGACAAATATTGTTAAATTGTGAGTCCTAAATTAGGATCTCTCCTTCATCTCTTTGGTGTTTGTAACACAGCAGGTCTTAAAGTGTCGCTCTGATCACGAATGTATACATATAGAGAGCTGTGGTTCAACTGTGTCATTATAATGTGAAAGTAGTTGATTGTGTCTAAAATTGAGTTACGTCACTGCACTTTTCATATTCTTCCGTTTTGGTGGTATTGGTGCCTCTCCGTTGAGGCGGAACTGAAATGGGGCAAAAAAAATTTCATCTTATTTATTGTGTGCTAAGGTTTAAAACCCATAACATTTCAATAGTATGTTCTAACAGCTCTAATTTAGTGATAATGCAGATTAGGCAAAGAAAGCCTTTCTTGACATTGTTTAAAGCAATTTCAAAATCCAAAATCGGTTTGAAAACATATCCAGAAAGTCAAATTAGTGCGTTTATACAGGAGGTAGTCCTCAAGTGGATTGGGAATGTTAAGTGATAGGTTACATTTTTCCTCAGCATATTCAAACTGTTTTTTAATGATCATTACTGAGAGTGCCATATCTGGTTGACCAATTGTATTTTGTAAAGACAAAATTAGGATTTCAGTTGCAACTTTACAACTTTTGTTTGTTCCTAACAGGCTTTTTAGACTAGAAGAAGATATTTAAAAGCTGTTGGAAAGAGATTGGCAGTATTTCTGTTGTAAAGTAGTAATTTCATAGAATGTGGTCAAGAGTCACTAAGGCACATAATGTAATTCAAATGTTTTTTTTTGTTTTTTTGATACATGATTACTATCAAAACTGAACTGCCAATACTATTCCAAAGTCATTGTGAACCACCATGGAATTTTCAGCTTCCTCTTTCCCCACACCACTCTTTTGCCTCATTCTGAGATATTGCCCCTCCCCTCACCATTGTGACCTCACAGATGTAAACATATGAGCCCCGCCCCTTCCCAACA

Function

symbol description
rnf24 Predicted to enable ubiquitin protein ligase activity. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in Golgi apparatus. Is expressed in segmental plate. Orthologous to human RNF24 (ring finger protein 24).

GO:

id name namespace
GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000049_09532855_09551543.mRNA False 1519 mRNA 0.42 14 9532855 9551739
TU240251 True 6110 lncRNA 0.38 5 9539362 9554478

Neighbor

gene id symbol gene type direction distance location
CI01000049_09421372_09430717 ADRA1D coding upstream 101249 9421219 ~ 9431606 (+)
CI01000049_08933819_08935755 LRRTM1 coding upstream 596925 8933701 ~ 8935930 (+)
CI01000049_08918472_08920408 LRRTM1 coding upstream 612272 8918354 ~ 8920583 (+)
CI01000049_08707784_08716438 NA coding upstream 816220 8706001 ~ 8716635 (+)
CI01000049_08454444_08471856 SUCLG1 coding upstream 1060999 8454342 ~ 8471856 (+)
G211804 NA non-coding upstream 21858 9510728 ~ 9510997 (+)
G211803 NA non-coding upstream 22944 9509672 ~ 9509911 (+)
G211799 NA non-coding upstream 50311 9482123 ~ 9482544 (+)
G211706 NA non-coding upstream 187714 9344913 ~ 9345141 (+)
G211669 NA non-coding upstream 223988 9308661 ~ 9308867 (+)
G211815 NA non-coding downstream 20679 9572418 ~ 9575295 (+)
G211822 NA non-coding downstream 49252 9600991 ~ 9601444 (+)
G211817 NA non-coding downstream 57880 9609619 ~ 9617855 (+)
G211833 NA non-coding downstream 86561 9638300 ~ 9644413 (+)
CI01000049_08326623_08329601 NA other upstream 1202940 8326285 ~ 8329915 (+)
G210091 NA other upstream 1653999 7873750 ~ 7878856 (+)
CI01000049_07219171_07224229 NA other upstream 2235793 7218811 ~ 7224268 (+)
G209660 NA other upstream 2650825 6878133 ~ 6882030 (+)
CI01000049_04473766_04475768 GM10043, LSM6, SNRPF, BRAFLDRAFT_125735 other upstream 5056585 4473662 ~ 4476270 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location