AMCG00017440 (LOC107734701)


Basic Information

Item Value
gene id AMCG00017440
gene name LOC107734701
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 4510419 ~ 4512209 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017440
ATGCTCAATAACATGGATTTAAGCTCGCAGGATTCGTTTTATTCTCAATACGACAATTGTTGCAGCACTTCCCCTGCAATTGAGACGGTCGGGCCAGAAACAAGTCAGGATATGATCACAGAGGCGCATAAGGAATCACCTGTTCACTTCACTCAAGgtGCAACTATGGAGCCCAAAACTGAACCCTCAAACTCGGATTTCTTCTTTGACCCCAGTGAAGGGTCTAACAGCGGTTTCCCCTCTTCCCTTGCCTACTCGGGCAGCTTCTATGTGGAGACCTCCCAGGGGGCCCCGATCAGCACCGAGACGCTGCTGAACATGATCACAGAGATCGTTGGGATTTCTACTCTACCCATCTCCGAAATGCAACAGAGTCAACATGAGACGGTGCTTTCTTCACCTTCTCAATTGCATGACAATCACGGCTTTTCTGGTGCTGGTTTCCAATGCCAGACACCCATCTGCCCTACCAGTAGTGCATCTCCGCCGCTGTACTCGCAATCCCAAATGTGCTCAAGCTACCCAAACCTTCAGGCAAGTCTGCAGGTCCAGGATTCTTCTATGGCTGAAGCTAACTTTGTTGTTCCAGCTCAGGATTTACACCAGAAGCCATTGGAGCCACAGCCAGGGGTGACCACCTTCCCCGTTGTTGTCAAAAGTGAATTCGAGAGCAGCTGCTATGAGTGGGACCCCTTCAGTAAAACCGAGTCGTATCTTTCCACAAATTACGGGTCAGAAATGTTTCCTATAGCGGGCGATTGCTCCCCTGATCAACAAGTGGATTCAAAAGATTTCCTCGACTCCTTTTCCCCTGCTTGTCATAGCTCTGAACTCGGGTGCAAATTGGATACTCCGCTCAAACAGGAGCAGTGCTTTATTGATAACAACCAACAGAGTTTCCAGAGCCATGTGTTCGGCAACTATCAAGTGCAGACCATGGGTGTATCTAACAACGCCAGCAGTGTTTTGAAACCAAGTGTATTCCCCAATGCTGGGATCCAAACTTTAACAAGCCAATGTGATTTAGCTTACACCACCTCCACGCTCTCCAGCGCCATAGATTCACTCCTGTATCCATCCTTAGTCCCGGACACCTATGCTAGAAACAGTATCCAGGTGGAAAAAGCCCCACGAGTCAGGAAAAGCACACCTCGTACCAACGGGCCACCCAAGGAAAAGCCTTTCTCCTGCCCAATGGAAAACTGCGAGAGGCGTTTTTCCAGATCCGACGAGCTTAACCGACACCTCCGCATCCACACAGGACACAAACCGTTCCAGTGTCGCATCTGTTTGAGAAGCTTCAGCCGGAGTGACCACCTGACCACTCACACCCGGACTCACACCGGAGAGAAACCGTTTTCCTGCGACGTGTGCGGCAGGAGGTTTGCCAGGAGTGACGAGAGGAAAAGACACGGACGTGTGCACCTGAAACAGAAGGAGAAGATGGAGCTCAAACCTCAAATACTGTCAGCCTGCTCCTTTTCATTGCCTGAAGGAATTTGA

Function

NR:

description
PREDICTED: early growth response protein 1, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017440 True 1503 mRNA 0.50 2 4510419 4512209

Neighbor

gene id symbol gene type direction distance location
AMCG00017444 NA coding downstream 49142 4460519 ~ 4461277 (-)
AMCG00017442 fbxo41 coding downstream 70824 4410882 ~ 4439595 (-)
AMCG00017433 smox,LOC102778491 coding downstream 210640 4281484 ~ 4299779 (-)
AMCG00017435 NA coding downstream 240333 4242448 ~ 4270086 (-)
AMCG00017436 NA coding downstream 306158 4203686 ~ 4204261 (-)
AMCG00017441 NA coding upstream 25762 4537971 ~ 4550882 (-)
AMCG00017443 LOC107700321,LOC107757625,LOC107695387,LOC107595047,LOC107714648 coding upstream 46696 4558905 ~ 4584957 (-)
AMCG00017447 LOC106608414,LOC107396729 coding upstream 89295 4601504 ~ 4620068 (-)
AMCG00017448 nelfa,LOC100380775 coding upstream 131487 4643696 ~ 4661158 (-)
AMCG00017453 NA coding upstream 179924 4692133 ~ 4861977 (-)
G90345 NA non-coding downstream 119929 4384583 ~ 4390490 (-)
G90355 NA non-coding downstream 162107 4348094 ~ 4348312 (-)
G90354 NA non-coding downstream 163128 4346986 ~ 4347291 (-)
G90307 NA non-coding downstream 307612 4202607 ~ 4202807 (-)
G90289 NA non-coding downstream 468525 4041687 ~ 4041894 (-)
G90411 NA non-coding upstream 150627 4662836 ~ 4665167 (-)
G90443 NA non-coding upstream 417177 4929386 ~ 4937166 (-)
G90520 NA non-coding upstream 743880 5256089 ~ 5256406 (-)
G90540 NA non-coding upstream 843053 5355262 ~ 5356316 (-)
G90648 NA non-coding upstream 1164690 5676899 ~ 5677249 (-)
AMCG00017426 NA other downstream 1668525 2711302 ~ 2841894 (-)
AMCG00017418 NA other downstream 1894857 2601783 ~ 2615562 (-)
AMCG00017384 LOC106911887,LOC104963986 other downstream 4158633 160054 ~ 351786 (-)
G89804 NA other downstream 4404534 105685 ~ 105885 (-)
G90400 NA other upstream 30566 4542775 ~ 4544760 (-)
G90501 NA other upstream 646175 5158384 ~ 5221021 (-)
G90502 NA other upstream 710264 5222473 ~ 5223047 (-)
G90715 fat4,LOC106611628,LOC106604622 other upstream 1875043 6387252 ~ 6389038 (-)
G90746 NA other upstream 2221026 6733235 ~ 7188648 (-)

Expression


Co-expression Network