AMCG00017443 (LOC107700321,LOC107757625,LOC107695387,LOC107595047,LOC107714648)


Basic Information

Item Value
gene id AMCG00017443
gene name LOC107700321,LOC107757625,LOC107695387,LOC107595047,LOC107714648
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 4558905 ~ 4584957 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017443
ATGGAAGGCTTATGTCACATTTTCCAGACCTCTTGGAATGTGAAGATTATCACTGAAGAGCAGATAAGAGAAAACCGACAGAGCCGCTTCGCTGCAACGCAGGGCTTCACCGCACAGCAGACGAGAGAAATGGCGACTGAAGTGGAAGCATGGGCCGCCGCTCCGCAGCAGGACGGGATGTTCTCCACTATGCCAGGGTCTGAGGAGTTGGCAGAGCAGTTTGGGGATGACGACGACGTGCTGAACGAGGTGGAGGTGAATGGAAACTGGACCCCACAGGAGAAGGCCCTGCACGAGGCCCGTCTCAAGGCCAAGGCCAAACGCCGGCTGCGCAGGACTTCGTCCCGGGACTCGACGCGCGAGTCTCTCTCGGAGGCATCCGGCGAGCCAGGGGCTGATCCCACCAGCCCCAAGGGCAAGATCAATGGCAATGACCGCAAGTCCAGGATGGGCAAAGGCCGGGGGCTGCCCAAGAAAGGGGGAGCCGGTGGGAAGGGCGTGTGGGGCGCAGCAGGAATGGTGTACGAGATGGAGGAGCCGGACGCCAGGGATCCCAACTACGACGAGTCCTCTCAGGGAGACACGGTTTTTGCCACAGTGGTGCCTGAACTGGAGCTGGGAGAGCTGGAGAAAGCTGTAAACCCCATTGTACAGGAGTACTTTGAGCACGGGGACACAAGGGAAGTACAGGCTCTCCTGAAGGAGCTAAACCTGGGCGCTAACAGATTTGAGTTCTCGTCGCTGGCAGTGTCGCTGGCACTGGAGGGCAAGGCCAGCCATCGGGAGCTAACATCACGGCTGCTTTCTGACCTCGTGGGCAGGGTCCTGTCTGAGGCCGACATGGGGCGAGCGTTCGATAAGATGCTAAAGGACCTCCCAGACCTCATCCTGGACACTCCAGAGGCCCCGCAGatGCTGGGCCAGTTTATCGCCAGAGCAATTGCGGATCATGCTCTCCCCATGGATTTCCTGGACCGTTATAAGGGCAAGGTGGACTGTGAGCATGCCAGGGCTGCTCTAGACCGGGCTGCTGTGTTGCTGTCAATGAAGAGGGAGATAGTGCGACTAGACAACGTATGGGGCGTGGGCGGAGGACAGAGGCCTGTCAGACACCTTGTCAAAGAGATGAACCTGCTGCTGAAGGAGTACCTGATCTCGGGGGATGTGTCTGAGGCAGAGCGCTGTCTGCGGGACCTTGAAGTGCCTCACTTTCACCACGAGCTTGTCTATGAGGCTGTGATCATGGTTCTGGAGTCCACAGGGGAGTCGGCTGTGCAGATGATGGTGAAGCTGCTCAAGGCATTCTGGGAAACGGGCCTCATCACTCTTGATCAGATGAACCGGGGATTCCGGCGCGTGTTTGACGAGCTGCCCGATATCTGTCTGGATGTACCTCACGCCCACACCATCATGGAGACATTTGTGGACCTCTGCTTCACGGAGACTGTCATCACCAAACAGCTGAGAGACGCCTGTCCTTCCAGGGGGCGAAAGCGCTTTGTGAGCGAGGGTGACGGAGGGCTCATCAAGCAGTAG

Function

NR:

description
PREDICTED: programmed cell death protein 4-like

GO: NA

KEGG:

id description
K16865 PDCD4; programmed cell death protein 4

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017443 True 1536 mRNA 0.58 12 4558905 4584957

Neighbor

gene id symbol gene type direction distance location
AMCG00017441 NA coding downstream 8023 4537971 ~ 4550882 (-)
AMCG00017440 LOC107734701 coding downstream 46696 4510419 ~ 4512209 (-)
AMCG00017444 NA coding downstream 97628 4460519 ~ 4461277 (-)
AMCG00017442 fbxo41 coding downstream 119310 4410882 ~ 4439595 (-)
AMCG00017433 smox,LOC102778491 coding downstream 259126 4281484 ~ 4299779 (-)
AMCG00017447 LOC106608414,LOC107396729 coding upstream 16547 4601504 ~ 4620068 (-)
AMCG00017448 nelfa,LOC100380775 coding upstream 58739 4643696 ~ 4661158 (-)
AMCG00017453 NA coding upstream 107176 4692133 ~ 4861977 (-)
AMCG00017452 NA coding upstream 291554 4876511 ~ 4884349 (-)
AMCG00017455 mxd4,LOC107757594,LOC107700283 coding upstream 321857 4906814 ~ 4914079 (-)
G90345 NA non-coding downstream 168415 4384583 ~ 4390490 (-)
G90355 NA non-coding downstream 210593 4348094 ~ 4348312 (-)
G90354 NA non-coding downstream 211614 4346986 ~ 4347291 (-)
G90307 NA non-coding downstream 356098 4202607 ~ 4202807 (-)
G90289 NA non-coding downstream 517011 4041687 ~ 4041894 (-)
G90411 NA non-coding upstream 77879 4662836 ~ 4665167 (-)
G90443 NA non-coding upstream 344429 4929386 ~ 4937166 (-)
G90520 NA non-coding upstream 671132 5256089 ~ 5256406 (-)
G90540 NA non-coding upstream 770305 5355262 ~ 5356316 (-)
G90648 NA non-coding upstream 1091942 5676899 ~ 5677249 (-)
G90400 NA other downstream 14145 4542775 ~ 4544760 (-)
AMCG00017426 NA other downstream 1717011 2711302 ~ 2841894 (-)
AMCG00017418 NA other downstream 1943343 2601783 ~ 2615562 (-)
AMCG00017384 LOC106911887,LOC104963986 other downstream 4207119 160054 ~ 351786 (-)
G89804 NA other downstream 4453020 105685 ~ 105885 (-)
G90501 NA other upstream 573427 5158384 ~ 5221021 (-)
G90502 NA other upstream 637516 5222473 ~ 5223047 (-)
G90715 fat4,LOC106611628,LOC106604622 other upstream 1802295 6387252 ~ 6389038 (-)
G90746 NA other upstream 2148278 6733235 ~ 7188648 (-)
G90749 NA other upstream 2527479 7112436 ~ 7113181 (-)

Expression


Co-expression Network