AMCG00017448 (nelfa,LOC100380775)


Basic Information

Item Value
gene id AMCG00017448
gene name nelfa,LOC100380775
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 4643696 ~ 4661158 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017448
CGTCGATGAGGGAGAGCGACACCGGCCTGTGGCTCCACAACAAGCTAGGCTCGACGGACGAGTTGTGGGCTCCTTCTAGCATTGCGTCGCTGCTCACGGTTTCTGTCATCGATAATATCCGACTATGTTTCTCGAGTCTGTCGCCTCCGGTGAAGCTAAAACTGCTGCTCGGTATGCTGCATCTTCCGAGGCGCACAGTGGATGAGATGAAGGAGGCCCTTTCTGAAATCATCCAGCTGGCCACACTGGACTCTGAGCCCTGGGTCCTGATGGTGGCCGATATTCTGAAGTCCTTCCCTGAGACTGGTTCCCTCAACCTGGACCTGGAGGAGCAGAACCCCAATGTGCAGGACATCCTCGGGGAGCTCAGGGAGAAAGtgagtgagtgtgaggcCTCGGCCATGCTGCCACTGGAGTGCCAGTACTTAAACAAGAATGCCCTGACCACGCTGGTGGGTCCACTCACCCCCCCTGTCAAGCACTTCCAGCTGAAGAGGAAGCCCAAGAGCGCCACTCTCAGGGCAGAGTTGCTACAGAAATCAACAGAAACGGCTCAGCAACTCAAGAAGACTGCAGGAGTGCCTTATCATGCCAAAGGAAGGGGTCTAGTGAAGAAAATTGACACAACAACCCCCCTCAAAGGAATACCAAAGGCCCCATTTAGGAGCCCCACCACTCCCAGTATGTTCAGCCCCACCACCAACAGAACTCCCATCGCCCCCCCACGGACCCCCATGCGCAAGGAGAGGGGCGTCAAGTTACTAGACATCTCTGAGCTGGACATGGTGGGTGCTGGACGAGAAGccaaaaggagaagaaagacaTTAGacacagaagcAGGAGAGAAACCTGCCAAAGAAGAAGCGGTGGTTGAGAATGCAACGCCAGACTACGCTGCCGGCCTGGTGTCCACACAGAAACTTGGTGCTTTAAACAACGAGAACGTGTTACCCTCTACCAGTTATCTGCCCGCCACTCCCAGTATGGTTCCGTCATCTTCATACATTCCCAGCTCTGAAGCGCAGCAGGCCAACACTGGGGGCTCAGTGCGGGAGGCCCTTCAGACCAGCCGGCAGGCGGAGGAGTCTGCGCCCCCCAACACAGCGCTGCCCGGACAGTTCAAACAGAGGACGCCCCTGTACAACAGCGCCACCAGCCCCACGGCCCCCACCTCGCCACCCACCCCCACCAGCACCCCCATCATCAGTACCCCGCCTGCAGCTGCCACCGCCACGCAGCCAGAGCCCACCCCACAGCCCACCCCCACACAGCCTCCGCCGCAGCAGGCTGCCCAGCAGCCGCAGCCCAAAAAGAACCTCTCGCTCACGagAGAACAGATGTATGCTGCCCAGGAAATGTTCAAGACGGCAAACAAGGTTACCAGGCCAGAGAAAGCCCTCATTCTTGGCTTCATGGCAGGATCCAGAGAAAACCCATGTCCGGAGCAGGGAGACATCATCCAGATCAAGCTCAGCGAGCACACGGAGGTTCTGCCCAAGGCTGATGGCACGGGCAGCACCACCATGCTGGTGGACACAGTGTTTGAGATGAACTACTCCACAGGCCAGTGGACCAGACTCAAGAAATACAAGCCCATCACCAACGTGTCCTGAGGGCTGGTCGCTCCTCCAGCCGCATTGTGGGCCAAATCCAGCTTGTGAAGAGTGGGAcggtggggtgtggggggttcCATGCCTCGGTCTTATGGCAGCATGAACTGATGGCATCCGTTCCCCAGAGATACTGCAGCTCTTGTTTTGGGGATGTTGTGGTTCTGGGATATCTCAGAgcccaatatatatttttttgtttttattatttttttatttttataagccCACTGAAGTCTGCCCCTCAGTGTCCAAGGCTGGGGAGAGAAGCGCACGCTCCCCTTGTTTTGGATCATTCATGTGCAGCCCGTACTCAATACCTGACACTTGCTGAACAAGTGCACTTGCAGCTCTTCGAATCGCCCACCCTCACAGTGTGGTGCCCTGTGAATCGGCCTGCACAGCGCTCTTCTCTCTTTGAGAAGTCAGGGTGACACATCAGTACCCTCATTTAGTGGAAGAGCGCATTTGTGcccaattctgaaatgaaaacacaatgggattttgtcttttaatttgtttactgaTGAACAAGGAGGAAGGGACCTGCTTGTGGTAGTCAGTGCCTGTTCCTGCAGTAAATACACAATACTAAGAGGCTCTTCTTTCAAAAACTTTTCAAAGCTAGAGATAAATTGATTGTAATTGGCTTTCGGTGCAATAGCATTTCCTAAATATGAACCACTTTGTTTTGACAGGGACAAAGGTCTGGCATTTGAGATCTCTGGCTAAAGATGCAGAAGATAGaattcaagaaaataaactgttacTCTGTTAATTGAGCAAGATGGCATATATGGATCTCCTGGTACCTAAATGAAACGtgttaatgcatttcatatcGTTTTAATGTTAACTGCATTATTTCACTTTAGATTACATTCATACCCACTTAGTGTAGTCCACATACGTATGTCCTGTTCTCTACCCCTGCTTAGggataatatatacacacatacacacaaagacaaatgtaTAGTATATACATACTGACAtgcacgtgcacacacacatcataatatcaaacaatatcaaacaatatcaaatatcaaacaTCATACTCAGTTTCTATCTTTAATTCACACCCTTCCTTGTTTTGATGAATCTGAAGCATTTCCAGTTCAAACCAATACTTCATACAGCTGTCTAATTTGCTTCAAATGTCAGTCCCAGATTGCAGTTAAGCAAAAACAATAAGTATGCATAACACTTCTCTTTTAACAGATGCTAGGCAACTATGCTCACAAAAATTGGAATTCTGGGAAATCCATTCTTTGGTTGGCTATATTGTAATATTCAAGGCGATAACCACCCTCCATCAAGCGTTATATGCATACATTCTGCTGCATTACATTGAcgacaaattaaaatgttacatccACCCATCAGGCTGCTCAGTGAGATGCAGTTGTCTCCAATGGGAACTTCTTAGTTGACTCTTGTAGAagccactgcagtgtctttCACCTTCCAGCAGCTTGGGGCCTAATAAGAAACTCAGGATGTATAATCGGTAGCAGACCACGAACAGCAGCTCTCAGTAGGAACAAATAAAATTCATTATGGATGATTGTCCTTCTCTCATAGCACTTGGTTTGTATTTCTGAATGGCCTTCCAAACCACAAATTGCATAACCAGGGCTCTGTGACCTCTGTAACTTGTAGAAATAACATTAAACCCAGCCTTTGACAAACTGTTCATTGGATTAAATGTAACACATCGGTACTGTTGATCTCATAACCACCCTATCCATTGAACTATGAACATAAACCTAAAATAACCTCCACGTTTTGCCCTAGGGATGCAAGCACACTATTAAAAGGGAAATCTGTTCCTGTTGAATTAACATTCTTTAATTTCTCACTTGCTGCAATTCAAATGACATttatgagttttttttgttcgttttccTTATTATTTGATCTGACAGCTGTTCTGACGTAAGCAGCTTCTGAAAAGATCAGATCTACACTTgtacaaaagaaaatggcaaGGAGAGACTTTTCATTGTTGATCCCTGAAGCTGTAATGCTTGCCAAAGATGGTGAAATGGACAGATTAATACATCTAAGATTTTACACAGAACACACAACAccataatatgtaaaataacagGGACATACATTAAGTAATTGTTAGTTTTTATATTTGAGgaaaaactgctttattttatatttcttggaTGAGCAAACTGGGATAGTTGCTTCATTCACCAAAACCCTGCAGATGTTTTCTGTGATgttgaataaagtccactacCTCCGAGACATAAAGGTAGAAGACTCCTAAACAGTCCATTATCACTGTGTGTGCTAGTACAATTCTGTTTGGGTGGGGGAGCATTTTTGTTACATTAGTCAGTATATTCAGAGGCACCTAAACAGCCAGTGAAAAATCAATCTGAGGTCATTGTGtgtttcttaaatgtgtttaaaaagttTTTACTCCTTAATATAGcagttgtgtatgtgtgtacatacacGGGAAAATATTTGTCtacaattagtttattttatctgAGAAAATAGTCCCTCTTTGACTACAGAATCTCTAGACAAGTAATAACCTTCAAAGAATCATCTTGAAATAGGCAGATGTGTAATGTACTAGCTTCAATTtagccatttaaaaaagttcaaacatttaatttgtcagaACCTTCATCAGGACCAATCactatctcttttttttttgtgtgtaggtGTGAGAATACAATTACACACTCTAGACAGCTCTTGAACgatgtacttatttttctttattcaatATTTACCTCTGTTTAATAATCACATTTGGCTGTGCGATGTTAAAATTATGATTACAATTACTGGAGCTTAAcatctattatttttaagtgttttcatGGCTGTAAGTGAGTCAGTGGTTTCTTATGTGACGGATTGAAAAGAATCAAGTAACTAAATTCCTAAAGAAGGAACAAACATCAGAAACAACACAGATTCTGATACAGGCaacattttttgattttatataatttgaaatgtttattacagattaaaataacatctagtattacatacattacagcagttttgtttttattagaaagACAAATGCAAGAGGTGGAGTTtccattttcagaaacaaatctGATTATAAACAACAAAAGTTGCCATTTTGTATTTAAGCATGCAATTTCCAATATAATTACATCATAGCAGGTAGATTTACACTTGGACAAAATTGTTCCATAgaatcaatacatgttttgttttagctAAATTCTAAATTGAAAACTTAGGCCAacatttcaaaactaaacaCTGGGAAATTGCtattttttattgtggtttGTAACCTTCCAGTAGGCAACAGTTTTCTTCCAGTTGCATGACTGAGACTTGGACTTTTTTTTAGAAAAGCATGTAATAGTACAGTATGCATCCCATGGTGCTCTGGTAAAATAAGACACCACTtatgacaaaaatacatttaatggtgttttaatgttgtcttttttatatacattgaatttaaaattgAGTAAATAGAAAAGCTTTTAGCACCTGAAAATGTATGTCAActgcaaaatattgttttgtttgagttgTTTGATAACAGCAGTCCTTTACTGAGTTTATTTCTCTGACCCCTCTGAACAACACATACAGGATAAAGTATTCATTTGAGCAGTCTGGAAAGGAGACTTTCAGTCGGTGATGTCTGTTGGAAAGCTACACTGTTGGACATCATGAGACAAAAGCAACCCAAATTAAATATGTGAATGTAGTACTTTTGCTGAATTCAGTATCAGCATGAACCAAAACTATTTCTCCTAATGAATGCAAGCAGCTGCAAACGTTGCACTGTGATGATAATATTTTAACCcaacaactaaaaataaaatgtacaagtatatattttgtaatttaaaatgtttgtattcaagtctagaaaatattttagaagttttgattttgtactgaaatgttaaatattttttttatttattttttatagccgCGACAACAGAATATTACACAATGGTGTGACTTTCCACTAAACTAGACGTCTTTCAGTTTGTTACTTTGCTGTTTACTGGATTTATGTCTGTATCAAGAACTGGTACAAATCTGGATTGGGTTCACATTTTAACAGCTTCAGTATGGACTGATGGAGAAGGATGCATTGTCTGTTTCAAGGTGCCTTCACTGGGTTTGTCAAGCGCATCAAGGGATTAGCTCACAGCTCTTttctactttttgttttttaattgtacaggtgtaaaaagaaaaaacaggccTTCTGTCTTTCTGTTACATTCTTGGcgaaaaatgtacagtacatacagtacatttggTTTTCTGAAGATGCTCTAAAGTTGTTCAGTTTTATGAATGCACAGCCATAGTAGTACACTTGTTTCAATTTAGACAGGGGGTTGAACATTGTTGGACAGATTTAAGACGGCTGCGCTCGGATGACAATTCAAAACAGCcttcaataaaaacaactgtTGCAACACCATGCAGTGAGGCTTCTGATATTGTatgcctttctttctctccctctttttttcttctatatggAGGAAGGATTGAGGGGTCTGGGACCAGAGGCAAGTATCagttttgggtttgttttttctaacatGTTTTAGAAGTAGTCTCGGCtgtattacttaattaaactacCGTTATTCTTTGGCCTTGACTGGTGTGTTTCTGACTGACACTGTGTTGCATGATTGTGCTTGTGCTGGGATATTAATGTTTCAGTCCTGCTCATCCTTTTGTACACAGTGATGTCGCTAAATTTAGGTCCATACCTTAAATGCAGTCGGTCCTAGCTTTTTGAACTAATAACAGAGGGGTATGTAAATATAGATGCATCATGGGTAATAGTAATGTCAAATAACTGTTCTCTAAAGTAAAATGATTGAATTTACAAAGTAGAGAATATTGCACTctttatatactaatatatgGTTTATTTAAGACgtgaatcaaaacaaaatatttaataataaataatattctaCCCCTTGCTCGGAGCTTAGATGTCAAAGAGGGCTTTTGGCTGGACTGTTCTCTGGTCACCCAGGATTTTCTATGTTGGCCCTTTTCAAttgccaggctgtggtcactgagtctgtattttgtcttctggaaaaactaaaatatattctgcTAATTTGATGTTTCTGTTTAGGACCTGATAGCATTGAAGTTtatgctgtaatttattttgtaattgtggcTTGGATCTGAAGCTCGCTGGTTTCAGCTGTACTCAGTTCTGTGAGCCTCAGAGTGAAGCGGTACCCGTTTCAGTGAGATCGGGCTTTCATCTGGAAAACCATAACTCTGGTCTTGTCCAGATTGACTGTCAGGGCCCAtttctgacagtactgctcCAGCAGGGCCAGCAGCTGCTG

Function

symbol description
nelfa Predicted to be involved in negative regulation of transcription elongation from RNA polymerase II promoter. Predicted to be part of NELF complex. Orthologous to human NELFA (negative elongation factor complex member A).

NR:

description
PREDICTED: negative elongation factor A

GO:

id name namespace
GO:0034244 negative regulation of transcription elongation from RNA polymerase II promoter biological_process
GO:0006414 translational elongation biological_process
GO:0032021 NELF complex cellular_component
GO:0003746 translation elongation factor activity molecular_function

KEGG:

id description
K15179 WHSC2, NELFA; negative elongation factor A

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017448 True 7009 mRNA 0.42 11 4643696 4661158

Neighbor

gene id symbol gene type direction distance location
AMCG00017447 LOC106608414,LOC107396729 coding downstream 23628 4601504 ~ 4620068 (-)
AMCG00017443 LOC107700321,LOC107757625,LOC107695387,LOC107595047,LOC107714648 coding downstream 58739 4558905 ~ 4584957 (-)
AMCG00017441 NA coding downstream 92814 4537971 ~ 4550882 (-)
AMCG00017440 LOC107734701 coding downstream 131487 4510419 ~ 4512209 (-)
AMCG00017444 NA coding downstream 182419 4460519 ~ 4461277 (-)
AMCG00017453 NA coding upstream 30975 4692133 ~ 4861977 (-)
AMCG00017452 NA coding upstream 215353 4876511 ~ 4884349 (-)
AMCG00017455 mxd4,LOC107757594,LOC107700283 coding upstream 245656 4906814 ~ 4914079 (-)
AMCG00017460 NA coding upstream 309250 4970408 ~ 5010102 (-)
AMCG00017458 NA coding upstream 391134 5052292 ~ 5067312 (-)
G90345 NA non-coding downstream 253206 4384583 ~ 4390490 (-)
G90355 NA non-coding downstream 295384 4348094 ~ 4348312 (-)
G90354 NA non-coding downstream 296405 4346986 ~ 4347291 (-)
G90307 NA non-coding downstream 440889 4202607 ~ 4202807 (-)
G90289 NA non-coding downstream 601802 4041687 ~ 4041894 (-)
G90411 NA non-coding upstream 1678 4662836 ~ 4665167 (-)
G90443 NA non-coding upstream 268228 4929386 ~ 4937166 (-)
G90520 NA non-coding upstream 594931 5256089 ~ 5256406 (-)
G90540 NA non-coding upstream 694104 5355262 ~ 5356316 (-)
G90648 NA non-coding upstream 1015741 5676899 ~ 5677249 (-)
G90400 NA other downstream 98936 4542775 ~ 4544760 (-)
AMCG00017426 NA other downstream 1801802 2711302 ~ 2841894 (-)
AMCG00017418 NA other downstream 2028134 2601783 ~ 2615562 (-)
AMCG00017384 LOC106911887,LOC104963986 other downstream 4291910 160054 ~ 351786 (-)
G89804 NA other downstream 4537811 105685 ~ 105885 (-)
G90501 NA other upstream 497226 5158384 ~ 5221021 (-)
G90502 NA other upstream 561315 5222473 ~ 5223047 (-)
G90715 fat4,LOC106611628,LOC106604622 other upstream 1726094 6387252 ~ 6389038 (-)
G90746 NA other upstream 2072077 6733235 ~ 7188648 (-)
G90749 NA other upstream 2451278 7112436 ~ 7113181 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000026_01003422_01010038 NELFA, NELFA.L coding CI01000026 null 1003422 ~ 1010599 (+)