G115514


Basic Information

Item Value
gene id G115514
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 6837706 ~ 6838861 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU144677
CCATGAAGAAGATATAGCCTTTGTGATATCACAGTCTGGAGCACTGTTTTAATGATAATGAACATCTTATCAATCTCCAGTGTTAAAACACTGCTGGAGATATGGCATccttttaacacacacacagaaatagaaCGTTTTTGATAATTGACCTTTAaccattaaacaaaatcaaaaccgGGATGACAAGCATATTTGATGATCCTCATTTATCTCTCTGTACAAATAAGGACACTTTCCATCACTTATAAACTGGCTTACCAGATTGTGAGGATTCTGCATAACTTTAATGAGTGCTGGGTGGTTGTATCCTACAAAATCAGAAAGAATGGACAGTTAGAGGAGGTAAAGTTGCACACGCATACACAGGAAGACAAAATTACCTACAGAcaaatgtttgttatttgtttattcacttAAATAAATCTTAGTTATCCAGCTTTTTCAAATTCCGTTTTAACTTAAAAGCCAGGCAATTCAACCTAGCGATGTATATAGTTGTACTGCTGGTCTGTCCTTTTCTTAATCTTAGCGATCGAACACAAACAGATACCCAGATTCGAATGCACTGGAATGTGCCAGTTTACATAAGACAGAGCAGATAGTTCTTTTTGGTACTTAATGGTTCTTCTATTACATTAATAACAACACATTAGGCCTGAGGGGAGTGTTTGACATGGTCAGACTTCCAGAAGAAGCATAAAAAGGAAGTTCACACAAGTCCGTAGACTTTCACAAAGAAACAGATGTAAAAAGACATCCTGCTTTTGTACACGTTCTTGTCCATTTCGTTATACTCACTGCTTGtttgatttgaaatacaataaaacacggAGGGAGAATAATTACTGTGCTTGCTTGCTGGTTTGGGTGGGCGatacacattaattattaatgagATAAATGTGTACTTTACACTGACATATCTCCTCTCCCAATCAGCTACAGGCTTTGCCAAGATTAAACATGAAGGCTTGCTTAACCATTACTGCAAATTGCGGGCAAGTAGTGGATCAAGAAATGTCAGCATTCCTGGATTTGTGTcagattaaacatttgtaaaatacaatatatgtacgtgtatgtatatatctatatatatatatatatatatatatatacagtgttggaaaa

Function

GO: NA

KEGG:

id description
ko04964 Proximal tubule bicarbonate reclamation

RNA

RNA id representative length rna type GC content exon number start site end site
TU144677 True 1134 lncRNA 0.36 2 6837706 6838861

Neighbor

gene id symbol gene type direction distance location
AMCG00018294 NA coding upstream 8966 6827691 ~ 6828740 (+)
AMCG00018296 carhsp1,LOC107733846,LOC107576530,LOC107590589 coding upstream 18935 6815434 ~ 6818771 (+)
AMCG00018297 naa60 coding upstream 39481 6792054 ~ 6798225 (+)
AMCG00018295 NA coding upstream 47243 6785250 ~ 6790463 (+)
AMCG00018281 NA coding upstream 105212 6731610 ~ 6732494 (+)
AMCG00018300 NA coding downstream 45074 6883935 ~ 6899668 (+)
AMCG00018305 NA coding downstream 898765 7737626 ~ 7746484 (+)
AMCG00018308 NA coding downstream 965378 7804239 ~ 7814791 (+)
AMCG00018309 sept12,LOC107568113,LOC107733855,LOC107690244 coding downstream 1006606 7845467 ~ 7878193 (+)
AMCG00018312 flr,LOC107733869,LOC107738612,LOC107568167,LOC107680859,LOC105900006 coding downstream 1211549 8050410 ~ 8074161 (+)
G115511 NA non-coding upstream 4394 6829088 ~ 6833312 (+)
G115467 NA non-coding upstream 57660 6733707 ~ 6780046 (+)
G115481 NA non-coding upstream 64443 6772432 ~ 6773263 (+)
G115439 NA non-coding upstream 159353 6654122 ~ 6678353 (+)
G115441 arhgdib,LOC106606251,LOC107685923,LOC107590585 non-coding upstream 170483 6658533 ~ 6667223 (+)
G115535 NA non-coding downstream 246713 7085574 ~ 7086966 (+)
G115560 NA non-coding downstream 881746 7720607 ~ 7720964 (+)
G115585 NA non-coding downstream 1044344 7883205 ~ 7890901 (+)
G115591 NA non-coding downstream 1059079 7897940 ~ 7898180 (+)
G115640 NA non-coding downstream 1255339 8094200 ~ 8094449 (+)
AMCG00018280 NA other upstream 90268 6710482 ~ 6747438 (+)
AMCG00018272 NA other upstream 677090 6155488 ~ 6160616 (+)
G115299 NA other upstream 886689 5949463 ~ 5951017 (+)
G115049 NA other upstream 2073801 4761518 ~ 4763905 (+)
AMCG00018216 telo2 other upstream 2233601 4594933 ~ 4604105 (+)
G115590 fbxl16,LOC107685932,LOC107568165,LOC107738613,LOC107568127,LOC107690242 other downstream 1054766 7893627 ~ 7894449 (+)
G115648 NA other downstream 1280917 8119778 ~ 8122171 (+)
G115789 NA other downstream 1854503 8693364 ~ 8694719 (+)
AMCG00018358 polr3k,rpc11 other downstream 2360796 9199657 ~ 9206776 (+)
AMCG00018360 f100a other downstream 2400950 9239811 ~ 9245234 (+)

Expression


Co-expression Network