AMCG00018987


Basic Information

Item Value
gene id AMCG00018987
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 298834 ~ 309982 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018987
agagagagagagagagagagagagagagagagatcggaGTCCATTAGTCTGCAGCACCGAACCGAACCGAACCGCAGCCCAGACTTGCTCTGCAGTCGCCGATCAGGTGCCGGGCGGAGGCGCAGTGAGATGAGGGTTAGGAGCGCCCTTCTGCGGGAGCAGCCCAGAGAGACACGGGGGTCGCGTTAATACGCAGCAGCCCCCCGGGACAGAAGAGAGGAGCAGCAGCGCCGGCATTGCTCCAGCTGTCACTATTGCAGTCAAACCGTCTAGGTCCTCCTGCTGACGAGACGACGACAGCGCCTGGGCGGCTGATCCCGACAGCAGCCAGTCATGAGCGCGGCTCCGGGGGCTCCTGCGCCGATGCTGCCGGACCAGGAGGCGGCGAAGATCTACCAGAGCACCTACGAGCGCAACTCGCGGGCCATCGGGGTGCTGTGGGGCATCTTCACCATCCTCTTCGCCTTCGTCAACGGGATGTGCTTCGTCCTGCCCTACTGGATCGGCGACGGCGTGGACACCCCGATGGCCGGCTACTTAGGCCTGTTTCACTACTGCATCGGCCACAGCATATGGAGGGATCTCCCCTGCGATGGCAGCTTCACCGACTTCAGCTACAGCCCCTTCAAGGCCGCCTTCTTCTTCATCGGCCTGTCCATATTGCTGGTGATCAGCTGCATCGTGTGCTTCGCCCTGTTCTTCTTCTGCAGCACAGCGACCGTGTACAAGATCTGCGGCTGGATGCAGCTGGCCTCCGCCACTTGTCAGGCTCTGGGCTGCCTGATTTTCCCAGATGGCTGGGACTCTGATTTGGTGCAGCAATTGTGCGGGGATCAGACAGACAAGTATAGCCTAGGTGCATGCTCCGTGCGCTGGGCCTATATCCTGGCCATCATGGGCATCCTGAATGTGCTCATCCTTTCCTTCCTCGCCTTCGTCCTGGGCAACCGGCAGGATGGACTGATGGCCGAGGAGCTGCTGGCAGACAGCAAGGATCTCATCGGTGCCCTGTAGGTCGCAATCACCAATTTCACGCTCcagcttttttccccatcaCCCAGAGGGTGGGAAGCAGGCTGCAACTctagatagagagacagagacagagactctCCCAGGCTTTAACCAAGGAGCCCCCCTGAAGCCCCCTGCTCCCCTCCTCCCACCTATCACTGCTCCCCTCTCTTCTCATAGGGGGGCCATCTCGACTGGAGACGACATTCATTACGGACAAAGCATGAGACACAGCTGCAGCTccgacacactgacacaatgacacacaggGACTAACGCACTGACAGGTTAATTCCCTATGGACTGACATACAGGCCACACTGACACGCTGGCATTAAATCACTGGCACACTACCTCACTATCATACTGATATATTAACACAAGGCAGCAACAGCCACTAACACACTGATACACCGATACACGGGCAGAtagacaaacagaaacagactgACATACACAGGCAGACCCAATCAGAAACCACATTCATACAGAGACAGGCTGTGTTGATCAGAGACAAAGATATACCTGTATCAGAAACCTTCCAATCATTTGCATATCCCCCCTGCCCCTCTCATGAAGACGTCCAGCTCTCAgatctttaaattgtgtttgtgtataataAACTTAGgataacaagaaaataaaacatcaacaataacaatattagtaataattttataatacagAGAGGAGTCATGTTTTAGTTTAGTGATATTTATCCCATCCTCAGCGTGTCTGCAGTACACCTGGATTCTCAGAATGAAGCCCTTGCCGCCGTGGTTTCATGCATTGTGAAAGcattcaatatttggtggaaaatCCTTTGCAATCAATGAGAACAAGAAacagcaggaactaaagacagctgcagtgcaggcctggcagagcatcaccagggaagaaacccagcatctgctgatgtctatgggttccagacttcaggcagtcattgactgcaacgGATTTGCAAcccacaatttaattcatgattatgttagtttgtccaattacttttgagcccctaaaattgggggacgacatataaaaatgggtgtaattcctacaccgttgactaaatttggatgtaactaccctcacattaaagatgaaagtctgcacttaaatgcacatcttgatt

Function

GO:

id name namespace
GO:0015672 monovalent inorganic cation transport biological_process
GO:0030001 metal ion transport biological_process
GO:0006814 sodium ion transport biological_process

KEGG:

id description
ko04911 Insulin secretion
ko04727 GABAergic synapse
ko05032 Morphine addiction

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018987 True 2152 mRNA 0.52 3 298834 309982

Neighbor

gene id symbol gene type direction distance location
AMCG00018986 NA coding downstream 7931 281834 ~ 290903 (-)
AMCG00018985 NA coding downstream 101236 191794 ~ 197598 (-)
AMCG00018974 LOC107574283 coding downstream 126844 168042 ~ 171990 (-)
AMCG00018976 NA coding downstream 198580 94817 ~ 100254 (-)
AMCG00018972 kcnh2,kcnh2b,LOC106590277 coding downstream 243722 26747 ~ 55112 (-)
AMCG00018996 NA coding upstream 53221 363203 ~ 382072 (-)
AMCG00018995 NA coding upstream 72441 382423 ~ 390814 (-)
AMCG00018993 NA coding upstream 95387 405369 ~ 411757 (-)
AMCG00018994 NA coding upstream 106174 416156 ~ 418266 (-)
AMCG00019003 maf1 coding upstream 168045 478027 ~ 496837 (-)
G30594 sspo non-coding downstream 30907 266073 ~ 267927 (-)
G30593 NA non-coding downstream 38769 259434 ~ 260065 (-)
G30539 NA non-coding downstream 224684 73888 ~ 74150 (-)
G30612 NA non-coding upstream 103906 413888 ~ 414282 (-)
G30760 NA non-coding upstream 212137 522119 ~ 523996 (-)
G30784 NA non-coding upstream 402730 712712 ~ 733413 (-)
G30797 NA non-coding upstream 524476 834458 ~ 839109 (-)
G30809 NA non-coding upstream 577667 887649 ~ 894190 (-)
AMCG00018975 kcnh2b,kcnh2,LOC107713341,LOC106590277 other downstream 144309 144253 ~ 154525 (-)
AMCG00018992 NA other upstream 142973 452955 ~ 454764 (-)
AMCG00018991 NA other upstream 163467 473449 ~ 477096 (-)
G30729 NA other upstream 188750 498732 ~ 500189 (-)
AMCG00019007 LOC106613553,LOC108443229 other upstream 304416 614398 ~ 634293 (-)
G30849 NA other upstream 864542 1174524 ~ 1174983 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
striped catfish (Pangasianodon hypophthalmus) G24183 NA non-coding NC_047596.1 CM018542.1 9658633 ~ 9669391 (+)