G30784


Basic Information

Item Value
gene id G30784
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 712712 ~ 733413 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU38517
TGTTTCATCAACATTCACTTACATTATGTAGTGATTTGGTGATTATATATTCACTTttcccttgtttgtttttgtgttgtcaCAGCGCACGGACATGACGAacacggacacggacacggacacggacacgAACACGGACACTCAGgggatgcacatccagGACATGGACACGGACACAAAGGACATTTTCATAGAGCTGATTACAGCAAGTGTGGCTGTCCAGAGGAATGGACAATTTTTAAGGACCAATGCTTTGAATTTATTGATCATGAGAAGTCCTGGCTCGATGCTGAGctacACTGCCTAGGTCTAGGTGGCAACCTGGCTTCAGTGCACACTGAGGAGGAGTACAAGTTCCTACTGCAGGAGTTACACCACCACAACAGCAGCAACGACAAGGCCTGGTTGGGTGGCTCTGACCATTACCAGGAGGGCCAGTGGCTGTGGACCGACGGCTCCGTGTGGAAATACACCCACTGGAGCGCTGGAGAGCCCAATAACCTCGAGGCTCATCAGGACTGCCTGGAAATGAACTTCGGAGACGACCACGCCTGGAATGACCAGGACTGCAGTCACACGTTGCCATTCATCTGCGAGATGGACAGGGAatagagagaagagagagatggCAGGAGACAGGTGGGGGGAGACGCTGCTGTCGAGGAACCTGCTTGGGTggacctgtctgtctgtcactcaCTGTCAGCCCTTGTGCTGTAATAAACTGTTTTTGGCAA
>TU38518
TGTTTCATCAACATTCACTTACATTATGTAGTGATTTGGTGATTATATATTCACTTttcccttgtttgtttttgtgttgtcaCAGCGCACGGACATGACGGGGGTGCACATCCAGAacacggacacggacacggacacggacaTTCAGgggatgcacatccagGACACGGACACGGGCATGCAGGGCATGAACATAAAGGACATGGACACGCAGGACATTTTCATAGAGATATTGCCAGGGAGTGTGGGTGTCCAGTGGGCTGGGCCGGTTTCAAAGACCATTGCTTTGAATATGTAGAGGAGAAGAAGGCCTGGATTGATGCAGAGcTGCACTGCCAGAAACTGGGTGGAAACCTGGCCTCTGTGCACACTCCAGCGGAAAACACCTTCCTGCTGGCTCAGATCGACCAACACCACAACGAAACTGACACTCCCAAAGTCTGGCTGGGCGGCTCCGATGCACACAAGGAGGGAGTGTGGCTGTGGAATGACGGTACACCGTTGGTCTACACCAACTGGAACCATGGGCAACCCGACGATGAGGCTGGACTGGCCCACTGTCTGGAAATgaacgtcggagaGGCCGAAGGCTGGAGTGACCACACCTGCCATGAAGCCATGCCATTTTTCTGCCGTACAGAGAGGCACCAGAGACACTAGTGACAACGTGGCTTCAGTGGGAGATTGAAGAACCCTGGCATTCAATCACCTGCACACATGTATGCGTTGCTACAACTTGAGGAAATCAAGTTGGAATACCTGTAATTGCCTTTCAATTGAAAGCTCCTAATCTTCAATAAACTAAGTATTCCCCATAT

Function

GO: NA

KEGG:

id description
ko04610 Complement and coagulation cascades
ko05150 Staphylococcus aureus infection

RNA

RNA id representative length rna type GC content exon number start site end site
TU38517 False 737 lncRNA 0.51 9 727940 733413
TU38518 True 818 lncRNA 0.50 12 712712 733413

Neighbor

gene id symbol gene type direction distance location
AMCG00019010 NA coding downstream 42325 669383 ~ 670387 (-)
AMCG00019006 NA coding downstream 103065 594775 ~ 609647 (-)
AMCG00019002 foxh1,LOC108431400,LOC106590409 coding downstream 178319 525755 ~ 534393 (-)
AMCG00019001 gpaa1 coding downstream 193865 514803 ~ 518847 (-)
AMCG00019003 maf1 coding downstream 215875 478027 ~ 496837 (-)
AMCG00019018 rhpn1,LOC106584065 coding upstream 251132 984545 ~ 992405 (-)
AMCG00019019 NA coding upstream 269180 1002593 ~ 1012013 (-)
AMCG00019025 NA coding upstream 361427 1094840 ~ 1095844 (-)
AMCG00019023 NA coding upstream 382171 1115584 ~ 1133886 (-)
AMCG00019026 NA coding upstream 404808 1138221 ~ 1158854 (-)
G30760 NA non-coding downstream 188716 522119 ~ 523996 (-)
G30612 NA non-coding downstream 298430 413888 ~ 414282 (-)
G30594 sspo non-coding downstream 444785 266073 ~ 267927 (-)
G30593 NA non-coding downstream 452647 259434 ~ 260065 (-)
G30539 NA non-coding downstream 638562 73888 ~ 74150 (-)
G30797 NA non-coding upstream 101045 834458 ~ 839109 (-)
G30809 NA non-coding upstream 154236 887649 ~ 894190 (-)
G30823 NA non-coding upstream 317672 1051085 ~ 1053885 (-)
G30871 NA non-coding upstream 493417 1226830 ~ 1232565 (-)
G30900 NA non-coding upstream 623895 1357308 ~ 1358163 (-)
AMCG00019007 LOC106613553,LOC108443229 other downstream 78419 614398 ~ 634293 (-)
G30729 NA other downstream 212523 498732 ~ 500189 (-)
AMCG00018991 NA other downstream 235616 473449 ~ 477096 (-)
AMCG00018992 NA other downstream 257948 452955 ~ 454764 (-)
AMCG00018988 NA other downstream 375079 225374 ~ 337633 (-)
G30849 NA other upstream 441111 1174524 ~ 1174983 (-)
AMCG00019024 NA other upstream 441618 1175031 ~ 1177566 (-)
AMCG00019031 LOC107567020,LOC106939174 other upstream 506298 1239711 ~ 1260637 (-)
AMCG00019034 NA other upstream 588201 1321614 ~ 1323596 (-)
G31035 NA other upstream 972486 1705899 ~ 1710543 (-)

Expression


Co-expression Network