AMCG00019023


Basic Information

Item Value
gene id AMCG00019023
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 1115584 ~ 1133886 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00019023
tgtgtgtgtgtgtgttttagaggCAAAGTCCTCAGTACTGTCCCCTGTGCGGAGCTGAAGCGGGCTGTGCGCTCTGCCTCCCGGACTGCTGTCCCGATCCGCCGCTGGAGAGCCGGAGGAGCCGAGCGCCACTCGGATGACATACAGAGCTGCTTTCCCGTCGTTTAAAGACTGTTTTACTGTGGTTGTTATTTTGGACTGTTTTGCTTTTATGCTATATTGTGGTGTTATATGCTATTCTTTCCATGcatctttttattaatttaaaatatacatttttttcttcatcctgTAACGTCGCCACCTTTGGAGTTCATGCCGGAGGAAGTTTCAGTTATTTGTGCATGAACACTCAGGCAGCATTGTAAATATACTTTCGCTTTTTTATTTCGGTTTCATGGGCAATATGTTGTAATAAGCCGCGGCCGAGGTGCGCCAGTGTCCCTGCCCCGCTGCTCTGCCTTGCCTGGCGGCTCACGTCACCTCCGCGCCGCGGGGCCGCAGTCTGGACCGTCTCTGACCGCAGCTGCAGCCTGTCCTGCGCCCGGCCGGCCGGCCCGCTGCGATGCGCTGATCATGTGCGCAGCCCGGTTCAACGGCGGGGCGGAGGAGCCCTCGGGCGGCACCGGGCTGCTGGACTGGGCCGAGGCCGGGCCGCACGTCCTGCGCTGCCTGCAGGTCGGGACCGTGATGACGCTCTTCTACCAGAAGAAGTCGCAGCGGCCGGAGCGCCGGACCTTCCAGGTCAAACTGGACACCCGGCAGATCGCCTGGAGCCGCAACCCGGACAAGGTGGATGGCGAGGtggatATCCGAGAGATTAAGGAGGTGCGCCCAGGGAAGAGTTCGCGCGACTTCGAGCGCTGGCCGGAGGAGGCGCGCAGACTGGAGCCCTCACACTGCTTCACCCTGCTGTACGGCCTGGAGTTCAGACTGCGCACTCTGAGCCTGGCTGcaTTCAGCGAGGAGGAGGTCAGTCTGTGGCTGACGGGGCTGACCTGGCTggtgactgacacacacagagctccGGCACCCTGTCTAACAGAGAGGTGGCTGCGGAAACAGTTTGATGCCATGGATCGAAACAGAGAGGGCAGTGTCACAGTGAAGGATGTGAAGTCTCTGCTGCCCCAGATCAACTACAGAGTGCCCAACATGCGGTTCCTGCGGGACAAGCTGCAGgagGTGGAGGCTCGCTGTGACCTGACCTTCCCTCACTTCAGCCAGCTGTACAGGACTCTGATGTTCGACGCACAGAAGAGTGTCATCGAGCAGCTGGAGCTCTCCTTCCCCCTGCGGAATGTGGACAGGCCGGAGCTGTGTCAGATCTCTCTCTATGACTTCCAGAAGTTCCTCCAGCTGGACCAGAAGGAGCCCTGGGCGGCGGATCTGGCCCGGGTTCGAGACTTCCTGTGCGGTTACCTGAAGGAGGGGCAGCAGACCGCCGAGCCCACACTGCAGCTGGACGAGttCCTGTCATTCCTTTTCTCCCGGGAGAACGCGGTggcagaggtggggggggcggtGAACCCAGACGAAATGAAGCGGCCTCTGTCCCAGTACTGGATCTCCTCCTCACACAACACGTATCTAACCGGAGACCAGTTCTCGAGCGAGTCGTCTCTGGAGGCGTATGCCCGCTGTCTGAGGATGGGCTGCCGCTGCATTGAGTtggaCTGCTGGGATGGCCCAGATGACCTGCCAATCATCTACCACGGCCACACCCTCACCTCCAAGATCAAGTTCCTGGATGTACTGCACACCATCAGAGAGCACGCCTTCGTCACCTCCGACTACCCGGTGATCCTGTCCATAGAGGACCACTGCAGTGTGGTGCAGCAGAGGAACATGGCCTGTCTGTTCAGGAGGGTGTTCGGGGACATGCTGCTCACCAAGCCTGTGGACCCCAACGCAGAGGAGCTGCCCTCCCCCTACCAGCTGCGCAGGAAGATCCTCATCAAGcataAGAAGCTGGCTGAGGGGACTCTGTATGAGGAGGTGTCCTCTGCCAGCTGCTCTGAGAACGACATCAGCAACTCCCTGCGCAACGGGATTCTGTACCTGGAGGACCCCATCGACCACACCTGGACGCCTCACTACTTCGTCCTGACCAGCAAGAAGATCTACTACTCTGAGGAGACATCACACTACCAGAGCCcaggcgaggaggaggaggaggagggcaagGAGGAGCTGAACAGCACCGAGCTGCACTCGTCCGAGCGCTGGTTCCACGGGaagctggggggggggcgggacGGGCGGCAGGTGGCGGAAAAGCTGCTGCAGGAGTACTGCGGTGAgggggggggcaaggagggcaCCTTCCTGGTCAGGGAGAGCGAGACCTTCGTGGGAGACTACACCCTGTCCTTCTGgcGCTCAGGCCGTGTGCAGCACTGTCGTATTCACTCCCGCCAGGAGGGCGGCTCCACGCGCTTCTTCCTCACGGACAACCTGGTGTTCGACAGCCTTTTCCTGCTGATCCGGCACTACCGCCAGGTGCCACTGCGCTGCAACGAGTTCGAGATGCGCCTGGGCAGCCCTGTGCCGCAGCCCAACGCACACGAGAGccgagaGTGGTTCCACTCCAGCCTGTCCCGTGTGCAGGCGGAGCACATGCTGATGAGGGTGCCGCGGGACGGGGCATTCCTGGTGCGCAAACGCAGTGAGCCGCACAGCTACGCCATCTCCTTCAGGGCGGAGGGCAAGATTAAGCATTGCCGCGTGCAGCAGGAGGCCGGTCAGTTCCGGCTGGGCAGCTCGGCGGAGTTCGAGAGCCTGGTGGACCTTGTCTGCTACTACGAGAGACACCCGCTGTACCGGCGCATGCGGCTGCGCTACCCCATCAACGATGACACCCTGGACAGGATGGGCACCAcgGAGCTGGACTACGGGGCACTCTATGAGGTGCGCACGCCACACTTCTACGTCGAGGCCAACAAGATGCCCACTGCCAGGTGCACAGTGAAGGCGCTGTACGACTACAGAGCCCAGCGCGAGGATGAGCTTTGCTTCCCCAAACAGGCCCTGATCCTGAACGTGGACAAACAGGAGGGAGgctgTCCCCTGGGCTCGTTCCTGAAGGGCTTCATCGATGTGCCCATGTGCCACATGCAGGAGGAGAAGCAGATGGAGCGCAGGAAGAAGATCGCTCTGGAGCTGTCCGAGCTGGTGGTCTACTGCCGGCCTGTGCCCTTCGACGAGGACAAGGCCACACTGAtcactccctgtcctgtcctgtcctcaGAGATCGGGACGGAGCGGGCTTGCTACCGGGACATGTCCTCCTTCCCGGAGACGAAGGCGGAGAAGTACGCCAACCGCGCCAAGGGCCGGCGCTTCCTGCAGTACAACCGGCGCCAGCTGTCCCGCGTCTACCCCAAGGGCCAGCGCCTGGACTCCTCCAACTACGACCCCCTGCCCCTGTGGCTGTGCGGCTCCCAGCTCGTCGCCCTCAACTTCCAGACGCCtgACAAGCCCATGCAGCTGAACCAGGCCCTGTTCACCCTGGGGGGGAGCAGTGGCTTTGTGCTGCAGCCTGACGTCATGAGGGAGGAGACTTTCGACCCCTTCGACAAGACCACCCTGCGCCTGGAGCCAATCACCATCCAGATCCAGGTGTTGGGGGCGCGCCACCTGCCAAAGAACGGCCGCAGTATCGTGTGTCCCTTTGTGGAGGTGGAGGTGTGCGGCGCCGACTTCGACTGCAGCAAGAACAAGACCGACGTCGTGGcggaCAATGGGCTGAACCCAGTGTGGCAGCAGAAGCAGTTTGTGTTTGACGTCCACAACCCGTCCTTCTCATTCCTGCGCTTTGTGGTGTTTGAGGAGGACATGTTCAGCGACCCCAACTTCCTGGCCCAGGCCACCTTCCCCGTCCGCAGCCTCAAGACAGGCTACAGGAGCGTGCCCCTGAAGAACAGCTACAGTGAGGATCTGGAGCTGGCTGCCCTGCTGGTACACATCGAGATCGTCAATGCCAAGGTCAGAGGTCATGCTCCGCCCCCtctgctcttctctctcactccctctatCGTGATgatcccccccatccccatccccatcaccatcaccatcgataacaacaccaacaccaacctGCCTCGCCTGCGCGACCGCACAAGCGAACTGTCCAATCAGGTGTCGGCACTGGAGCGGGCGGGGCCGGCGGACCACTCCTACCAGCAGAGCCTGGAGGAGCTGCGGGCGGCACAGGACCAGCTGAGCGAGCTGATCGAGGCCCGCAACCGCCGCCTgatggagaagaagaagagagagaagctcAGGCAGCAGATGGTGGCGAAGCGCAGCTGAGGGGGGTGCAGCAAGCAGAGACCCCAACAGCACAGGCATGCGGCGGGGCAGCCCTGCCCTTTCCACGGCAATGCCAAGACTGTCAGGACCCCGCTGCCTGGGCCTGCCCAGCTCTCTGCAACTGAGCAAgaatcaacacaaacaaacaaacaaaccgtttaagaaaataagcaaattaaatcaatgaagGTGTAACAGCAAGGAACTGTAGGAGAACAGGAACACAGAAGGAAGGTCCTGTAGGAATTTCTAACACAATGCAGCTTTCTGTGCCTTTAAATGTATATCCAGGATGTATAGCTTTTACTCCGAGTATTGTCAGACTCAGCTTGACCCCCCAGAACACCCCCCGCGTAACAACACTACAGCTCCTcttaggggggggggggggggagtatctttttggaagaaagaaaacaacaactgcaattgtattataataataatgattatgatcAGGTTTATGTGTAAGGCTGGTGGAGCCGGGCTGGGAGGCCAGAGCTGGAGGACGAGTCACCGCGTCAGGCAGCAGCGAGGGAGCGCAGGAGCTGCAGCTGTGCGGCCCTGCAGCCCACCCCCCActggaactggaactggaactggaatCGCAACTGGAATGGGAGCTGGCATCGGAGCCACTCCGCTGAACTGGAATGTTAATCAGAACACCAGGCTGCTCTGTGCGTTCCGTGTGTCTgtccacgcacacacactctcacacacagcctCCTCTCCCCCACTGGCACCCTGACTCCTCTGAATCTAAAGGGCTCTGATATTGTCATGTGAGTGGCAATTCTCTACACTTGTTCTTAACATTCCATTTccagggaggagaggaggagtcCTGCTTTTCTTTAGTCCAGGAGGAGAGGTGGAGTCCTGACAGGCTCAGACAAATCATCGCTTTCTTCACATTTTTATCTTATATCTAATGTGCTGTTGCTCCGTGTGACACGGGAGCCCGTGTCTCTGAGCGTGCGTCCCGGGGAACGCAGGACATGCAAGGTCGTCACAGTGACGTCGTCCTTCTGGGGAGAGCGTTCAGACCTCCGGCCTGCGCTGAGGCAGCGGTGCGAACCCGAGCCGGGGTCCTGGTCTGACACGCTACACACATAAGAGAGTGTGAATccagtccccacgtagtctcctctgttccagggtgaaaaggttcaggtcctcagtctctcagtaggacattcccttcagacctggaataagtctggttgct

Function

GO:

id name namespace
GO:0035556 intracellular signal transduction biological_process
GO:0009395 phospholipid catabolic process biological_process
GO:0005509 calcium ion binding molecular_function
GO:0004871 obsolete signal transducer activity molecular_function
GO:0004435 phosphatidylinositol phospholipase C activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00019023 True 5548 mRNA 0.59 30 1115584 1133886

Neighbor

gene id symbol gene type direction distance location
AMCG00019025 NA coding downstream 19740 1094840 ~ 1095844 (-)
AMCG00019019 NA coding downstream 103571 1002593 ~ 1012013 (-)
AMCG00019018 rhpn1,LOC106584065 coding downstream 123179 984545 ~ 992405 (-)
AMCG00019014 NA coding downstream 377892 728065 ~ 737692 (-)
AMCG00019015 NA coding downstream 391918 712870 ~ 723666 (-)
AMCG00019026 NA coding upstream 4335 1138221 ~ 1158854 (-)
AMCG00019028 NA coding upstream 26918 1160804 ~ 1169115 (-)
AMCG00019027 NA coding upstream 35987 1169873 ~ 1171174 (-)
AMCG00019022 NA coding upstream 51342 1185228 ~ 1189475 (-)
AMCG00019032 NA coding upstream 57347 1191233 ~ 1193527 (-)
G30823 NA non-coding downstream 61699 1051085 ~ 1053885 (-)
G30809 NA non-coding downstream 221394 887649 ~ 894190 (-)
G30797 NA non-coding downstream 276475 834458 ~ 839109 (-)
G30784 NA non-coding downstream 382171 712712 ~ 733413 (-)
G30760 NA non-coding downstream 591588 522119 ~ 523996 (-)
G30871 NA non-coding upstream 92944 1226830 ~ 1232565 (-)
G30900 NA non-coding upstream 223422 1357308 ~ 1358163 (-)
G30932 NA non-coding upstream 371678 1505564 ~ 1505917 (-)
G31018 NA non-coding upstream 455693 1589579 ~ 1590721 (-)
G31038 nrbp2,LOC108267406,LOC108413492 non-coding upstream 598699 1732585 ~ 1733587 (-)
AMCG00019007 LOC106613553,LOC108443229 other downstream 481291 614398 ~ 634293 (-)
G30729 NA other downstream 615395 498732 ~ 500189 (-)
AMCG00018991 NA other downstream 638488 473449 ~ 477096 (-)
AMCG00018992 NA other downstream 660820 452955 ~ 454764 (-)
AMCG00018988 NA other downstream 777951 225374 ~ 337633 (-)
G30849 NA other upstream 40638 1174524 ~ 1174983 (-)
AMCG00019024 NA other upstream 41145 1175031 ~ 1177566 (-)
AMCG00019031 LOC107567020,LOC106939174 other upstream 105825 1239711 ~ 1260637 (-)
AMCG00019034 NA other upstream 187728 1321614 ~ 1323596 (-)
G31035 NA other upstream 572013 1705899 ~ 1710543 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_021417 plcg1 coding NC_007134.7 CM002907.2 2825940 ~ 2872819 (+)