G33750


Basic Information

Item Value
gene id G33750
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 18143496 ~ 18144704 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU42262
CTTTAGCaacactgtatttattatatatttgcattaacTACAACAACAATCAATCAGTTCCAATgtattggaaaaataatgtaacaatatGGGCTCAATTTTATTTCATCATAAGAAGACCTTTAGGGCAATCAACAAATGGGAGGAATCAAAGGACAGCTACAATTTACATCACAACATATCCTGACAAATGCATGAGTACTGTTTCAGTGAGGATAGACATTTCACAATATCCAATAATCTATCGGTGAGAATTTGGTTGTGTAAGGTGAACACTGATGTTACAATGTCTCCTGATGACTGTCTTCACCTACCTCTAATGTtggtaaatcaatcaatcaaatattatataaatatcagAAAAGACATTAACATTCCTCCTTGGTCTGAGAACTGAGGTTGATCTTTTTGAGGAAATTAAACCCAATCACAGAATCTGTCAAACAACTGTCTAGCAATTCCCTTCTCATGGATTTCTATGCATGTGTTAATATGATGAGAGGAACAAGGTGATGATGCAGCCTGAAGGTCTTTACATGTGGTCAATTTGAAAGGGGAAAAactgcaattaattaaatgtcaaaattaccttggaaaaaaaagatatactGTCCACTTTTTGAGTAAGAGTATAGTGTGTACATCATGAATTTGATGCAGGGAGAATATGAATACTTTGTGGAGATGCTATACAAAGTGCTTGTTTAAGAAGAGAAGGTGTTAACTTTGCCACAATGAGACTTAGCTTTCATCTCATTTGCAACAGTAACTGCTCTTATCCTGCAAAgcttgtattcaaaatatatttattaaatcactaaaactatattatttgttctttattCATATCTTAAATCTTTGGGGTATATTTATCTAGTCATACAATTGTCTTCTGCCAGTGTAGGCTAAACTTTGAACACAGCAAAATTAAAGTGTTCGATTGTGTAGCAAAGTGCCTTCTTCCCTTCCATGCACAAGGGGGTGAAGGCCACAGGCGACAGTGAGGAGGATGAGTGTGTGACAGAAGATTTCTGACATTGTTTCTGCTCCCTGCTGACTGCCAGAAAGGCTTCACTGACACAGTTTTTCTCATCAACCTCCTGTTTCTCAAGATTTCCTCTCAGTCTCAAAGGAAAACCTAGAAAGCTTTGTAAATAGAGGAAGGACAAAGTAAGGtcaataacaatatatatttattttatatacgta

Function

GO: NA

KEGG:

id description
ko04913 Ovarian steroidogenesis
ko04927 Cortisol synthesis and secretion

RNA

RNA id representative length rna type GC content exon number start site end site
TU42262 True 1209 lncRNA 0.35 1 18143496 18144704

Neighbor

gene id symbol gene type direction distance location
AMCG00019386 sdcbp coding upstream 339051 17799605 ~ 17804445 (+)
AMCG00019384 NA coding upstream 349909 17783334 ~ 17793587 (+)
AMCG00019385 LOC108412264,LOC105893799,LOC107718110,LOC107693703,LOC107722516,LOC107691428 coding upstream 378830 17760073 ~ 17764666 (+)
AMCG00019387 NA coding upstream 404844 17724423 ~ 17738652 (+)
AMCG00019388 fam110b,LOC107589885,LOC105031585,LOC108247726 coding upstream 434881 17707530 ~ 17708615 (+)
AMCG00019389 rab2a coding downstream 34545 18179249 ~ 18207126 (+)
AMCG00019394 NA coding downstream 86511 18231215 ~ 18239613 (+)
AMCG00019393 chd7,LOC107585562,LOC107688517,LOC107718105,LOC107589837,LOC106568873 coding downstream 113105 18257809 ~ 18296221 (+)
AMCG00019395 LOC102793628,LOC103377196,LOC107098905 coding downstream 192847 18337551 ~ 18378055 (+)
AMCG00019400 nkain4,LOC107724178 coding downstream 372435 18517139 ~ 18525098 (+)
G33634 NA non-coding upstream 710868 17430953 ~ 17432628 (+)
G33615 NA non-coding upstream 718598 17422624 ~ 17424898 (+)
G33585 NA non-coding upstream 823461 17315673 ~ 17320035 (+)
G33521 NA non-coding upstream 1085276 17057586 ~ 17058220 (+)
G33474 NA non-coding upstream 1342569 16798149 ~ 16800927 (+)
G33794 NA non-coding downstream 240180 18384884 ~ 18389982 (+)
G33795 NA non-coding downstream 250697 18395401 ~ 18395619 (+)
G33796 NA non-coding downstream 254312 18399016 ~ 18399743 (+)
G33800 NA non-coding downstream 286660 18431364 ~ 18438265 (+)
G33809 NA non-coding downstream 305913 18450617 ~ 18450841 (+)
AMCG00019376 NA other upstream 690837 17449320 ~ 17452659 (+)
G33406 NA other upstream 2061553 16043942 ~ 16081943 (+)
AMCG00019345 NA other upstream 2516541 15554819 ~ 15626955 (+)
G33283 NA other upstream 2973655 15164348 ~ 15169841 (+)
G33159 LOC103376870 other upstream 3656790 14439253 ~ 14486706 (+)
AMCG00019402 NA other downstream 860320 19005024 ~ 19021412 (+)
AMCG00019415 NA other downstream 1140832 19285536 ~ 19294208 (+)
AMCG00019428 LOC107595150 other downstream 1306543 19451247 ~ 19455137 (+)
G34170 rpl7 other downstream 2462770 20607474 ~ 20610889 (+)
AMCG00019475 march6,LOC105024238,LOC102207159,LOC101475102,LOC102312386,LOC104929871,LOC100690953,LOC102783154,LOC107746911,LOC107686038,LOC107732575 other downstream 4470919 22615623 ~ 22643226 (+)

Expression


Co-expression Network