G34432 (LOC107584984,LOC108256437,LOC107701635)


Basic Information

Item Value
gene id G34432
gene name LOC107584984,LOC108256437,LOC107701635
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 22780231 ~ 22783116 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU43105
tTGCCTTTCACAACTATTACTACATAATACTACGACTCTGACCTCGAGTCATCATTCTTACCTCTTAGTTACCATGCGTTTGGTGATAGACTCAAAAATACACAAGTAAGGACACAATTTGTGTACATTCCCCTTATGTAGTAAAGGCGTAATCAAATACACAGGCTTCTGTTGATTTCTGTTCTATACATTTCAATTGGTGTTGTAATACCTCAGATATAATGGTCCTAATGTGACTGAACGTGGAGAAATCAGACGGTATGAACAGTGATTACTTGCACATCTCTGTGATAACATAGGGATTTGGGTTAAACTATATATTAATCAATGATGTAAGGGTAGTTTTAGGGAATAAATAtctgttttgatattttttgcaaacACCACTGTTTTACCACTgcagaaaatgtaaactgttAATTGTGATTGATGTACCACTGAAAAGATCAATCAGGGATTTCTACTCTGAGgctgaaacacagaaaacaagaaacaaaaataatcttgtAAATGAACAAACCATCCAAAAACTTTGTGTCCTAGATGGTCAGTTTATATCGTAGCAGTTGCAAATTGTAGAGGCAATAAAAATATCCACAATTCTTGAAAACACCTGGTCtggagcaacaacaacaacaaaaaaaagttgtacGCACATATTGCAATACAAGTTATTAGGTATGACGTGTCTATCTTCACAGGTTTTTGTGCTTGCTTTTGAATGTGAACTCATGCAAGTGTTAAGAGCAGGATATTCTAAACAGCTCTGAAGATCGTACAGAGTAATTTATTGTCCTGGCATCTGAACATCACCCAAATCTCAGAACGCTGATCTATATAACTTGGAAACAACATAATTCAGACCAGGAGGTCAATATCTTTAAGTGTATGTTGGAATCAGAACATGAATTTGAACAGAGTCCTATTTTACAAGTCTTTATGATAACGTTGTTGCTTTTAGTGACACTGACATCTGCacataaaaattatatatatatttatatatatttatcattctCTATTAACATTTTAGTCTACGATGATtcacctttttttaatgtaaattgaaacaGTAGTAGCCACCCGTCTCTGAAAGAATGCCTCTCTTCTCAAAACAATTTTCTCAACTAACAAGACACGCCCAGCtaatattgagagagagatttgtACATCTTTGGAGGGAATTAAGCTCTCAAAGATTTTGCCCTCCTGGTTATATTCCAGTATTCTCTAGATATAGCTTAATTCCATTAAAcacatttaggaaaaaaaagcatttacaaaCTGGCATCAGGAGAACAAATAACTATCCATTGAATGTAAACTTTAACTAAAGTTCTAAATCATCTCCAACTCGGCACCAGAGATAATGTAGTTtggcacatttttaaatcctcttTTAATATAAGCACAGATAATTGAGATACTAGTGGAACAGACAGGTTTTATGCAAATATGGATGACAAACAAAGTTGAATTTATTATCTTTTAACACTGTTTCATCATAAAGAAAAACCTGGTATAAGTgataacccccccacccaaaaaaaaaaaaatctatttcaaataTCTACATCTAAAATTTTTAGGCAGTGAAAAAGCACTTCATTGACAAGGAGTGTGGAATGATGTTCTGTTAACTGTTTGGAACtgcttaaaacatttgtttagttGCCACAAACAAATTCACATTATCAGAACGAACAATACTGCTAAATACTTCCTTCTTGCTgttaaaacatacttttttaGGAAAGGAAACGTTGGTAATTTATACGTCtttccagagcttttttttttaaccgtaAAACATTATTAAGAGCCACTGCAGAAGGGACACAGTGGCATCCGTGTAATATACACAATGCACTTGTATCTCTGTAATGTACATCAAATACTTTACAACAAAGCATtgaaaaaaaagtaagaattaaaaaaatgataaaaataaagtaagagAGAAAAGGCTAGAAGCATCCTCTTGTACAGAAGAAACCCCCTTAAATGCAAGTTGAAGCCTGGATTCACAATGAAGTAAAAGGTAAGAAACATAATATGAAAAGCTGTTCCCCTAGCTTGTGTGGACAACAGTTCATTTCTTGTGCTTGACATACTCATCTCTCTACTGTCCCGCCTATTTACAGTCTGTTTCCAACGTCGACATCCTAGTTTCCCTCAATGAATTGACTCGAAAGGTCAAGATCTTTGCTCGCCACTAAACGAGAACCTTCTGTCATCTCTCATCTGATCCACACTTTCTTTATGCCTTGCCTCCAGGCCTCCGGCTCCACACCCCCCTCCCATCCCCAGTCCAAAACTTTTAAATAACCTTTCTACGGAACGAGCTTTGACAAACTAAACTTGCTGAAAAATGTCTTGTGGTATGCATGCACATGCACGGTCCCCCTGTGGTCATTCGCTGCTGGACTGGAGCCCCTAGACCCAGGAGTCGGGAGAGGCTGGGTAGTGGCTCGTTTCATAGTTGAGTTCACTATAGGGACGAGCTGCTGAATAGAAGTCCACATAGTTGCCAGTTGACTTCAGTCCCAGGTGCATATTGTAGTCTGTGGCGGGCGGAGGGCGGTGATGTACTTGATCTTCAAAGAAAGAGTCTTCAAAGTTTCTAGTGGAGTTTTGGAACGGCGGAAACGTGTCGTAGTCTTTCCTAGTGCTCTCCTGTGGAACGGGCTGAGAAGAAACCTGTGGGAGAGGAAGGACGTGAGCAGATTACCCTTTTCACACCTCATACAACTTGGCAATTGTGCGACAAGTTCATGACAGGAGATGACTTGCTAATTAACTGTTCAACACGAAATCCGGTGTCAGAGCAGCGCTGCGTGTGTCCTCTTTATGTGACACTGCTGGATTTCACAGCTTCTAATTTCA

Function

NR:

description
PREDICTED: catenin delta-2-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU43105 True 2886 lncRNA 0.38 1 22780231 22783116

Neighbor

gene id symbol gene type direction distance location
AMCG00019477 NA coding upstream 78195 22693692 ~ 22702036 (+)
AMCG00019479 NA coding upstream 91954 22670411 ~ 22688277 (+)
AMCG00019478 ropn1l coding upstream 123322 22644268 ~ 22656909 (+)
AMCG00019470 cct5,LOC107686714,LOC107695377 coding upstream 192097 22582760 ~ 22588134 (+)
AMCG00019469 sema5a,LOC108426609,LOC106578437 coding upstream 325702 22390170 ~ 22454529 (+)
AMCG00019488 NA coding downstream 783465 23566581 ~ 23575527 (+)
AMCG00019494 NA coding downstream 1312179 24095295 ~ 24102633 (+)
AMCG00019493 NA coding downstream 1325846 24108962 ~ 24149017 (+)
AMCG00019495 NA coding downstream 1370381 24153497 ~ 24178723 (+)
AMCG00019499 NA coding downstream 1397079 24180195 ~ 24182210 (+)
G34378 NA non-coding upstream 202759 22575974 ~ 22577472 (+)
G34278 NA non-coding upstream 1318340 21461682 ~ 21461891 (+)
G34235 NA non-coding upstream 1689815 21090144 ~ 21090416 (+)
G34204 NA non-coding upstream 2003615 20771526 ~ 20776616 (+)
G34192 NA non-coding upstream 2033260 20672987 ~ 20746971 (+)
G34433 NA non-coding downstream 5892 22789008 ~ 22789463 (+)
G34435 NA non-coding downstream 16284 22799400 ~ 22799718 (+)
G34436 LOC107686039,LOC107746909 non-coding downstream 35027 22818143 ~ 22818460 (+)
G34438 NA non-coding downstream 98064 22881180 ~ 22888739 (+)
G34445 LOC107590286,LOC107591257,LOC107701635,LOC108438556 non-coding downstream 145904 22929020 ~ 22929310 (+)
AMCG00019475 march6,LOC105024238,LOC102207159,LOC101475102,LOC102312386,LOC104929871,LOC100690953,LOC102783154,LOC107746911,LOC107686038,LOC107732575 other upstream 137005 22615623 ~ 22643226 (+)
G34170 rpl7 other upstream 2169342 20607474 ~ 20610889 (+)
AMCG00019428 LOC107595150 other upstream 3325094 19451247 ~ 19455137 (+)
AMCG00019415 NA other upstream 3486023 19285536 ~ 19294208 (+)
AMCG00019402 NA other upstream 3758819 19005024 ~ 19021412 (+)
AMCG00019481 NA other downstream 402700 23185816 ~ 23204250 (+)
AMCG00019480 NA other downstream 450154 23233270 ~ 23248099 (+)
G34511 zfhx4,LOC107590192,LOC107721891 other downstream 889009 23672125 ~ 23695801 (+)
AMCG00019492 NA other downstream 1262573 24045689 ~ 24086481 (+)
AMCG00019496 NA other downstream 1432761 24215877 ~ 24219991 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
rainbow trout (Oncorhynchus mykiss) G2113953 LOC106599307 non-coding NC_048592.1 CM023246.2 19321641 ~ 19324735 (-)