AMCG00019949 (LOC107599025,LOC107725315)


Basic Information

Item Value
gene id AMCG00019949
gene name LOC107599025,LOC107725315
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 3722895 ~ 3728526 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00019949
ATCACATCTAATGCCGAGGCTGAAGGAATCGCGGTCCCACGAGTCTTTGCTCAGCCCCAGCAGCGCCGTTGAGGCTCTGGATCTCAGTATGGAGGAGGAGGTCGTGATCAAACCCGTGCACAGCAGCATCCTGGGCCAGGACTACTGCTTTGAGGTTACAACAACAACCGGAAGCAAGTGTTTTTCCTGTCGCTCTGCCGCAGAGAGAGATAAATGGATGGAAAACCTGAGGAGGGCTGTGCACCCAAACAAAGACAACAGTCGACGGGTGGAGAACATGCTGAAACTATGGATTATAGAAGCCAAGGACTTGCCGGCCAAGAAGAAGTACTTCTGCGAACTGTGCCTGGATGATACGCTTTACGCACGGACTACCTGCAAGCTCAAAACGGACAACGTGTTCTGGGGCGAGCACTTTGAGTTCAACAACCTGCCCGCCGTCAAGAGCATCACAGTGCACTTGTACAAGGAGAcggacaagaagaagaagaaggacaaGAACAACTACGTGGGGCTGGTGAACATCCCCATCGTGGCGGTGACCGGGCGGCAGTTTGTGGAGAAGTGGTACCCAGTCAGTACACCCAACCCCAACAAGGGCAAGACCGCCGGCCCCATGATCCGCATCAAGGCCCGGTACCAGAGTATGAACATCCTGCCCATGGAGCTGTACAAGGAGTTTGCCGAGTACACCACCAACAACTACATGGTCCTCTGCTCGGTGCTGGAGCCCGTGCTGAGTGTCAAGAACAAGGAAGAGATGGCCAGTGCGCTGGTGCACATCCTACAGAGCACCGGGAAAGCC

Function

NR:

description
PREDICTED: disabled homolog 2-interacting protein-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00019949 True 805 mRNA 0.55 3 3722895 3728526

Neighbor

gene id symbol gene type direction distance location
AMCG00019950 NA coding downstream 16798 3675107 ~ 3706097 (-)
AMCG00019946 NA coding downstream 193259 3523288 ~ 3529636 (-)
AMCG00019947 NA coding downstream 225149 3496276 ~ 3497746 (-)
AMCG00019944 NA coding downstream 343298 3340802 ~ 3379597 (-)
AMCG00019945 garnl3,LOC102797662 coding downstream 395144 3323779 ~ 3327751 (-)
AMCG00019952 phf19,LOC106580128,LOC106585785,LOC107557185 coding upstream 378471 4106997 ~ 4133823 (-)
AMCG00019953 NA coding upstream 414464 4142990 ~ 4164282 (-)
AMCG00019954 NA coding upstream 436273 4164799 ~ 4172609 (-)
AMCG00019955 si:dkeyp-51b7.3,fibcd1,LOC106585783,LOC107665003,LOC107598982,LOC107725318 coding upstream 456779 4185305 ~ 4195180 (-)
AMCG00019956 fibcd1,LOC105015243,LOC108428067,LOC107574583,LOC107596897 coding upstream 526746 4255272 ~ 4263577 (-)
G59852 NA non-coding downstream 47881 3671023 ~ 3675014 (-)
G59826 NA non-coding downstream 75561 3646039 ~ 3647334 (-)
G59827 NA non-coding downstream 80781 3640038 ~ 3642114 (-)
G59825 ttll11,LOC107579646 non-coding downstream 125135 3597205 ~ 3597760 (-)
G59810 NA non-coding downstream 231846 3490718 ~ 3491049 (-)
G59853 NA non-coding upstream 52372 3780898 ~ 3796706 (-)
G59862 NA non-coding upstream 310989 4039515 ~ 4039918 (-)
G59880 NA non-coding upstream 366824 4095350 ~ 4095984 (-)
G59907 NA non-coding upstream 580150 4308676 ~ 4308945 (-)
G59922 NA non-coding upstream 893451 4621977 ~ 4622357 (-)
G59806 NA other downstream 242786 3479782 ~ 3480109 (-)
AMCG00019942 NA other downstream 536930 3166237 ~ 3185965 (-)
G59720 NA other downstream 611548 3107801 ~ 3111347 (-)
G59712 NA other downstream 688560 3031856 ~ 3034335 (-)
G59545 NA other downstream 1215875 2494899 ~ 2507020 (-)
AMCG00019976 fam102a,LOC105891604,LOC108430372,LOC103389177 other upstream 1283918 5012444 ~ 5061512 (-)
G60118 NA other upstream 1535388 5263914 ~ 5265925 (-)
AMCG00019993 NA other upstream 1548136 5276662 ~ 5278291 (-)
AMCG00019992 NA other upstream 1563064 5291590 ~ 5292673 (-)
AMCG00020002 edf1,LOC106563255,LOC105015108,LOC100194632 other upstream 2431051 6159577 ~ 6172474 (-)

Expression


Co-expression Network