AMCG00020442 (LOC106562006,LOC107565776,LOC105924362,LOC107741896)


Basic Information

Item Value
gene id AMCG00020442
gene name LOC106562006,LOC107565776,LOC105924362,LOC107741896
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 19826809 ~ 19832079 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00020442
ATGAGCAACCAAAAGAGAATATTTGAAGCCGCAAAGATGTTGTCCCTCGCTGCTCGCTCCGGGGCTTTCTCCCCGTACTTGCAGGCAACTTCGTTTGCTGTAGCAGGACCACTCAAACCCCTGGCCCCGGGAGTTGTCGTCAAAACCGAAAAGGTTTTGCAAGACCTGAAGAAACCGTTCCTGTGTCGGGAGTCGTTAAGAGGCCAGAGCGCCAAGACTGGGCCCGCCGTCTCTGTCGGCATCAATGctgCTGCCAGCGTTCGTTTTGCTCATACCGACATCAAAATCCCAGATTTCTCTGATTATAGAAGGCCTGAGGTGCAGGATCCAAATAAGTCCTCACAAGAGAGCAGTGAAGCAAGGCGGACCTTCTCCTACCTGTTCACCGGGGCCACGGCTGTGGTGACCGCGTACGGGGCCAAGACCGTGGTCACCCAGTTCATCTCCTCCATGAGCGCCTCAGCCGATGTCTTGGCTCTGTCGAAAATCGAAGTCAAACTGTCCGAGATCCCAGAGGGTAAGAACATGACCTTCAAATGGAGAGGAAAGCCGCTCTTCGTCCGCCACAGGACCGCAAAGGAGATTGATACTGAAGCTGCCGTGAACTTGGCCGAGCTGCGCGACCCCCAGCATGACTTAGACCGTGTTCAGAAACCCAAGTGGGTGATTGTGATTGGTGTCTGCACTCACCTTGGCTGTGTGCCCATTGCTAATGCCGGTGAATTTGGTGGCTACTACTGCCCCTGCCACGGGTCTCACTATGATGCTTCGGGGAGAATAAGAAAGGGTCCTGCACCTGCCAACCTGGAGGTGCCGTTTTATGAATTCCCTGACGAGGATACGGTTATTGTAGGTTAGGTCATGGACTCTTGAATTTCCTTTCCTCTCCGATCTGTGTATACAAAGGGTTTATTTGAACAGTGTTGCTTTTACCATCTGTTTATCTCCAGTACAGCAATACTTAAAACCTTAAACTCTTTGTaagtaataaatgtaaattttaccTCATTTAGAGCAACTTGTGTCAAGTTATTTATACATGATAAGACTTGGAAAActtgtataaaatacaaagtaaaaattACTATTCACATTTGGTCTCTGCTCTGGTGTATATTAACAAAtttagtttaacatttaaaattgggTTGTAAAGCAGTACACTTCTACagattaaacttaaaatgtaagaaattgCTGTCCACAGAGAATAGATTTTTCAATTGGTTTGGAGTGTGTGGTGTTCAGCTGACTTTTAATGGGTGTTAATAAGAATTAAATGTATACTGCAAGATGTCAACAGAACTGGGTAGCATTGATACTggatcaatttatttttatttaaccatAGGATTTTACTAGTAACATTATTGCAAACCTATTTTTACCTGTCTGAAATTGGTGGAAGTAAAATATTTCTCAAGAAGGCGTTCATTATTCTCGAGTGAAAAAGGGAGTCCCATTATACATTACTTGTAGCACATACagaattaattcataaattacTGCAGAttgtaatgttgaaataaacatgcagtttaatttgtgtaaattaCGACATTCACCAGTATCTCCTGTTATATCAGTCTAATCAAAACGTGCAAAtctctaaaatgttttattttgatttaatcgcaaataaaaaatctattacAATATTTGTCTAGATTATACTTTATAACTGCATGGGATGCTCAGTCATATCAAGTCAAGTTTTGCACTGATTGGAGTTCACAGTATATGAAAATCATCTTTGAAGTTACCTTCTAGTTCTATGTGTAATGAGCTTTGCAAAAGGCTTGAAATATTGGGCTTTTTTATACAATAGGgaaataaaatttaatttttaaatttgattgcTACAAATTGATTAACTGCACTGTGTCAATGCCCAAGTGCTCAGACATTTTTATACATCAGAAATTAccttttgtttaacttttttttttttttttacttattacaGAAGGAAAAAGGTAATCTCtcatacaaatgtttgtttgaacaTCCTTAGACCATGATGGCAGGTTTGAGTTCTACTGATTTATGACCTAAAACCAGTTAATCGGAACATAAATTAATTGACATTTCATTAATGAAATGTCAGAACAACCTGCTGTTTCTGTGACTTGCTTTATGGAGAGTGGAGGTGATTAAGATCCTAATAGCTGGCTAACCAGGCTGATATTGTAATGCATCATTGACTAATAAACAGCTAATAATAGAATACTTGATTTTTCCCACTTCTGCTACAGGGCCTGTGTGGTGctatacaatgtatttattgagtaATGATGATTTGACATTTATGCAAAACAATTGATCTATGTTCAGTTTACTCAAATTATGGAAATAAAGtttttatctttaaatgcaAGATAA

Function

NR:

description
PREDICTED: cytochrome b-c1 complex subunit Rieske, mitochondrial-like

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0006810 transport biological_process
GO:0070469 respirasome cellular_component
GO:0005739 mitochondrion cellular_component
GO:0008121 ubiquinol-cytochrome-c reductase activity molecular_function
GO:0046872 metal ion binding molecular_function
GO:0051537 2 iron, 2 sulfur cluster binding molecular_function

KEGG:

id description
K00411 UQCRFS1, RIP1, petA; ubiquinol-cytochrome c reductase iron-sulfur subunit

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00020442 True 2382 mRNA 0.39 3 19826809 19832079

Neighbor

gene id symbol gene type direction distance location
AMCG00020436 tshz3,LOC107696607 coding upstream 653424 19169312 ~ 19173385 (+)
AMCG00020431 NA coding upstream 963536 18783271 ~ 18863273 (+)
AMCG00020432 NA coding upstream 1057384 18765518 ~ 18769425 (+)
AMCG00020429 LOC106562044,LOC106587150 coding upstream 1098840 18707806 ~ 18727969 (+)
AMCG00020430 NA coding upstream 1146013 18671902 ~ 18680796 (+)
AMCG00020443 NA coding downstream 403517 20235596 ~ 20237641 (+)
AMCG00020445 NA coding downstream 423698 20255777 ~ 20260661 (+)
AMCG00020444 NA coding downstream 467934 20300013 ~ 20310689 (+)
AMCG00020458 phkb,LOC107591034,LOC107723134,LOC107757780,LOC107598686 coding downstream 635309 20467388 ~ 20489997 (+)
AMCG00020459 phkb coding downstream 669412 20501491 ~ 20526222 (+)
G63259 NA non-coding upstream 172537 19653224 ~ 19654272 (+)
G63248 NA non-coding upstream 196242 19630274 ~ 19630567 (+)
G63209 NA non-coding upstream 463325 19361872 ~ 19363484 (+)
G63208 NA non-coding upstream 497314 19326595 ~ 19329495 (+)
G63203 LOC101154678 non-coding upstream 543636 19282958 ~ 19283173 (+)
G63313 NA non-coding downstream 35706 19867785 ~ 19868282 (+)
G63318 NA non-coding downstream 365098 20197177 ~ 20197427 (+)
G63328 NA non-coding downstream 406751 20238830 ~ 20240926 (+)
G63334 vps35,LOC107659455,LOC107598694 non-coding downstream 416753 20248832 ~ 20251957 (+)
G63360 NA non-coding downstream 479620 20311699 ~ 20313272 (+)
AMCG00020438 NA other upstream 190588 19631325 ~ 19636221 (+)
AMCG00020439 LOC107696663,LOC107556242,LOC107746488,LOC107726063 other upstream 224485 19597203 ~ 19602324 (+)
G63045 NA other upstream 1492777 18332569 ~ 18334032 (+)
AMCG00020407 NA other upstream 1754758 18067787 ~ 18072051 (+)
AMCG00020408 NA other upstream 1761020 18058558 ~ 18065789 (+)
AMCG00020470 NA other downstream 2303289 22135368 ~ 22142198 (+)
AMCG00020487 NA other downstream 2524095 22356174 ~ 22409493 (+)
AMCG00020505 NA other downstream 3221719 23053798 ~ 23062149 (+)
G63786 znf821,LOC107747380 other downstream 3238332 23070411 ~ 23074945 (+)
AMCG00020529 LOC107090538 other downstream 4200958 24033037 ~ 24068457 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_034012 uqcrfs1 coding NC_007118.7 CM002891.2 45400716 ~ 45406089 (+)
grasscarp (Ctenopharyngodon idella) CI01000026_15144573_15146721 UQCRFS1 coding CI01000026 null 15142586 ~ 15146823 (+)