AMCG00020529 (LOC107090538)


Basic Information

Item Value
gene id AMCG00020529
gene name LOC107090538
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 24033037 ~ 24068457 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00020529
ATGGAGGGGCTGCCTCCCCCCGCCCCACCACAGAAGACGCAGGCCAGGAGGACCCCCAAGGCCGACCAGTCACTCGCCACCACATCTGAACACTACGAATGcttcaattttcccACTGACTCTACTACACCACCTGCTGGAGCTGTAGTGGTTCAGGGCAGGAGCGCTGTGCTCAATCTGCGGCTCATCACAGAAACGCACGCATTCCTCATTGAAGCAGGTGTTGGAAAGTCTCACCTGAGCCCAGCTGAGAGGCGGTGGTCAGTGTCCGAGGGGCGCCGGCCCTCCAGGGCAGCCGGGCGGGCGCTGTGTGGGCCGGGCGGAGGAGCAGGGTCCGGGCGGCGGGGAGCTGTGCGGAGACGCAGCGCAGCGCCGCTCGCATCGCCATCTTCGCGCGTCTCTGACGGAGtgacgcacgcacgcacgcgcgCGCCCGTATCCCAGCCGCCTCAGCGCGCAGCC
>TU79992
caaaaaaaaaaaaaaaaaaaaaaaaaaaatcaaaataaatccagTTTAAATCCAGTTAGAAAACtcgtttgtgttttatttgcagttttcccACTGACTCTACTACACCACCTGCTGGAGCTGTAGTGGTTCAGGGCAGGAGGTGGGTGGTATTAGTGTGGAAAGTTCTAACCACAATTTACATAAGAAAGGGGAACAGTGACTCCCAGGGATCCTGTTAGTCCTCAATTGATTTGATATATCTTTCATAACCGTCTTCGTCCATCAGCTCCTCCAACTCCGCTGGGTTATCAATGGTCATCTTGATCAACCAGCCCTCCTTGTAGCAGGACTTGTTCACTAGCCCTGGGTTGTCTGCCAGAGCCTGGTTGATTTCAGTTACCTCCCCAGTCAGAGGAGAGTAGAGCTCACTAGCAGCCTTCACACTTTCCAAAGCACCAAACTCATCCATTTTGCCAAGCTTTGTCCCAACTTCTGGAAGTCCACAATATACTACATCCCCCAATGCTTCCTGAGCAAAATTGCTGATGCCAACTGTTCC

Function

NR:

description
PREDICTED: glycine cleavage system H protein, mitochondrial-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00020529 False 462 mRNA 0.67 4 24062753 24068457
TU79992 True 541 lncRNA 0.43 5 24033037 24065337

Neighbor

gene id symbol gene type direction distance location
AMCG00020522 NA coding upstream 61463 23925180 ~ 23971574 (+)
AMCG00020520 NA coding upstream 175234 23813512 ~ 23857803 (+)
AMCG00020517 zfhx3 coding upstream 350735 23657711 ~ 23682302 (+)
AMCG00020519 zfhx3,LOC105888974,LOC106533552 coding upstream 421891 23608590 ~ 23611146 (+)
AMCG00020518 zfhx3 coding upstream 450297 23575106 ~ 23582740 (+)
AMCG00020530 psmd7,LOC107584693,LOC107659147,LOC107553010 coding downstream 91820 24160277 ~ 24163714 (+)
AMCG00020535 NA coding downstream 133857 24202314 ~ 24210374 (+)
AMCG00020536 NA coding downstream 147614 24216071 ~ 24225069 (+)
AMCG00020534 LOC104940465,LOC106520303,LOC103466051 coding downstream 157544 24226001 ~ 24232399 (+)
AMCG00020532 NA coding downstream 177084 24245541 ~ 24249251 (+)
G63898 LOC108433019,LOC103398424 non-coding upstream 133283 23898507 ~ 23899754 (+)
G63890 NA non-coding upstream 135282 23850350 ~ 23897755 (+)
G63789 NA non-coding upstream 946104 23086378 ~ 23086933 (+)
G63787 NA non-coding upstream 955724 23076901 ~ 23077313 (+)
G63784 NA non-coding upstream 962888 23068311 ~ 23070149 (+)
G63947 NA non-coding downstream 2259 24070716 ~ 24072160 (+)
G63948 kars,LOC107738348,LOC107584690,LOC107679917 non-coding downstream 6592 24075049 ~ 24076475 (+)
G63951 NA non-coding downstream 20057 24088514 ~ 24093237 (+)
G64009 NA non-coding downstream 164282 24232739 ~ 24242677 (+)
G64048 NA non-coding downstream 420447 24488904 ~ 24565492 (+)
G63786 znf821,LOC107747380 other upstream 958092 23070411 ~ 23074945 (+)
AMCG00020505 NA other upstream 970888 23053798 ~ 23062149 (+)
AMCG00020487 NA other upstream 1623544 22356174 ~ 22409493 (+)
AMCG00020470 NA other upstream 1890839 22135368 ~ 22142198 (+)
AMCG00020438 NA other upstream 4396816 19631325 ~ 19636221 (+)
G64046 NA other downstream 410378 24478835 ~ 24482114 (+)
AMCG00020572 NA other downstream 993916 25062373 ~ 25076690 (+)
AMCG00020573 NA other downstream 1009685 25078142 ~ 25084873 (+)
AMCG00020585 NA other downstream 1390639 25459096 ~ 25472886 (+)
G64372 NA other downstream 1482454 25550911 ~ 25553320 (+)

Expression


Co-expression Network