AMCG00020536


Basic Information

Item Value
gene id AMCG00020536
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 24216071 ~ 24225069 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00020536
CTGATAACATTTTGTACAGCCCACTATACCAGTCGTCACGCACTGTATAAAGCatagggaggggagagagaagagttGAAGTCTGTCTAGTGGAGATCATAAAGGCTGgaagtgaaaaacacatgaagctagtatttctttgttttttttttaaagaaacatcaaAGTAGTTATACCactccaaaagaaaaatgcagtacGATTACAGcaggaacaaaacagaaaaccccGATCCTATAAAAGCGGAAATTAAAGGCACTCTCCCAGACTGGCTGCAGGGCACGCTGGTGCGCAATGGGCCCGGCATGTTCTCTGTGGGAGAGACCTCCTACAACCACTGGTTTGACGGAATGGCACTGCTGCACAGCTTCACCATTAAAGACGgAGATGTTTTCTTCAGGAGTAGATATCTCCGTGGAGATACCTATAAAAGTAACATGGAGGCCAAAAGAATAGTGGTGTCAGAAATGGGAACTATGGCCTACCCAGATCCATCAAACAGTTTAATCTCTAAAGCAATCAAATTTCTCTCCCATACTGTTCCAGATTTCACAGACAATTGTGGAAACAACATTATTAAATATGGAGATGATTTTTATGCCACTTCAGAAACCAACTACATCAGGAAAATTGACCCGGAAACCCTTGAAACACAAGACAAGGTTGACtatctgaaatacattgctGTAAATCTGGTCACCTCACACCCACACTACGATAAAGATGGAAGTACCTACAACATGGGGACTACTATAGCAGAAAAGGGAAAGACCAGATATACAATCTTCAGGGTACCACCAGCTGAAGAAGACAGTGACAAGAAGAAGCCTGTGCTGAAGAGCTTGGAGGTGATATGCTCTGTGCCGTGCCGCTCCCTCCTCAGCCCCAGCTACTACCACAGCTTTGGGATCACTGACAATTACATCATTTTCTTGGAGCAGCCTCTCAAACTGGACATCCTCAAGATGGCAACCGCGTACATGAGAGGAGTCAACTGGGCCAGCTGTCTCAACTTCCAGCCAGAAGATAATACACAGATTCACCTGATTGATCGAAAGACCTGTAAGCCAGTGTCAACAAAGTTCTTCACAAATGCACTGGTCGTCTACCACCATGTCAATGCGTATGAAGATGATGGCCACTTAGTGGTTGATGTCATCGCCTATAAGGATAACAGCCTGTATGAGATGTTCTACCTGGCTAGTCTGCAACCGAACTCCAGCAGTGGAGAGGCTAAGGGGAAACTCACATCTAAACCAAACTATGAGAGATTTGTCCTACCACTTCAGTCTGACAAGTTGAAATCTACATCAGCAACTGCTTTGAAGGAGAAAGAGGGCAAATTGTTCTGTTTCCCCGAAACATTGTTTAAAGGAGCCGAGTTGCCAAGGATTAACTATAACTTTAATGGCAAGAAGCACAGATATGTCTATGTAACATGTGTGGAGCAATCTCCAGTGCCTTTGAAGATTATGAAACTGGACATTGAGACTAAGCAGCAGCTGTACTGGGGCGAAGACGATTGCTGGCCATCTGAGCCAGTGTTTATTCCAGCGCCCAATGCAGTGGAAGAGGATGATGGGGTTGTTTTGACTGTGGTGGTCCGCCCCTATCCAGAGAAATCCTCCTTCTTGCTTGTGCTGGATGCCAGATCATTTAAGGAGGTGGCGCGGGCCTGTGTGACTGCAGATCTGCACATTGACATGCATGGCTTCTTCATCCCACGGCGCACATAGCATACAGACTTTCCTTTGTCAATCCTGGGCAGTGTCAGTGTTATAAAGAGCAGGGGGGAAAAGTATGActcaacagaagaaaaactcCTACTCCCTGAATTGCTGCTGACTGGTGATCGTgctaatgtatattttcaagtAAGCTGTTGGGTGGCCTATATGTGTAAACTGTCCATCTTTTCAGTCCACAGCTTAGTATCATTTTGTCTACCTATGCTCTGGAAGAGCAGATTGCCTTAATGTAATATATGGTTTATGTCTGTGGAATAACCCATAAGCCTGATGCAATAAATTCAAGTAAagcatctgtttttttgtcttgcaTTTTGTGCACATAAAAGTACAGCAGTTGCAGCCTGTGTGGGCTGTTTCAGATTAAGAGATCTCTGAACAGGTTTCTGCAAAGCAGGTTTACAGTAAGAGTTCAGATTagtattaataaatgaaaaaaataaaatacacttgaaCTGGGGAATCTAAAGGGCTGCCAAAGAATTTACTAACTGG

Function

GO:

id name namespace
GO:0001754 eye photoreceptor cell differentiation biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0030902 hindbrain development biological_process
GO:0004497 monooxygenase activity molecular_function
GO:0008198 ferrous iron binding molecular_function
GO:0003834 beta-carotene 15,15'-monooxygenase activity molecular_function

KEGG:

id description
K00515 BCMO1, BCDO1; beta-carotene 15,15'-dioxygenase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00020536 True 2243 mRNA 0.44 11 24216071 24225069

Neighbor

gene id symbol gene type direction distance location
AMCG00020535 NA coding upstream 5697 24202314 ~ 24210374 (+)
AMCG00020530 psmd7,LOC107584693,LOC107659147,LOC107553010 coding upstream 52357 24160277 ~ 24163714 (+)
AMCG00020528 NA coding upstream 153396 24057094 ~ 24062675 (+)
AMCG00020522 NA coding upstream 244497 23925180 ~ 23971574 (+)
AMCG00020520 NA coding upstream 358268 23813512 ~ 23857803 (+)
AMCG00020534 LOC104940465,LOC106520303,LOC103466051 coding downstream 932 24226001 ~ 24232399 (+)
AMCG00020532 NA coding downstream 20472 24245541 ~ 24249251 (+)
AMCG00020533 vat1l,LOC106562097,LOC106587190 coding downstream 26006 24251075 ~ 24271033 (+)
AMCG00020531 clec3a coding downstream 79565 24304634 ~ 24308160 (+)
AMCG00020537 map1lc3b,LOC107701564,LOC107714047,LOC107654145,LOC107581828 coding downstream 105817 24330886 ~ 24343935 (+)
G63951 NA non-coding upstream 122834 24088514 ~ 24093237 (+)
G63948 kars,LOC107738348,LOC107584690,LOC107679917 non-coding upstream 139596 24075049 ~ 24076475 (+)
G63947 NA non-coding upstream 143911 24070716 ~ 24072160 (+)
G63898 LOC108433019,LOC103398424 non-coding upstream 316317 23898507 ~ 23899754 (+)
G63890 NA non-coding upstream 318316 23850350 ~ 23897755 (+)
G64009 NA non-coding downstream 7670 24232739 ~ 24242677 (+)
G64048 NA non-coding downstream 263835 24488904 ~ 24565492 (+)
G64069 NA non-coding downstream 369061 24594130 ~ 24597787 (+)
G64121 NA non-coding downstream 466928 24691997 ~ 24695554 (+)
G64122 NA non-coding downstream 471533 24696602 ~ 24696809 (+)
AMCG00020529 LOC107090538 other upstream 147614 24033037 ~ 24068457 (+)
G63939 NA other upstream 160479 24051989 ~ 24055592 (+)
G63786 znf821,LOC107747380 other upstream 1141126 23070411 ~ 23074945 (+)
AMCG00020505 NA other upstream 1153922 23053798 ~ 23062149 (+)
AMCG00020487 NA other upstream 1806578 22356174 ~ 22409493 (+)
G64046 NA other downstream 253766 24478835 ~ 24482114 (+)
AMCG00020572 NA other downstream 837304 25062373 ~ 25076690 (+)
AMCG00020573 NA other downstream 853073 25078142 ~ 25084873 (+)
AMCG00020585 NA other downstream 1234027 25459096 ~ 25472886 (+)
G64372 NA other downstream 1325842 25550911 ~ 25553320 (+)

Expression


Co-expression Network