AMCG00020531 (clec3a)


Basic Information

Item Value
gene id AMCG00020531
gene name clec3a
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 24304634 ~ 24308160 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00020531
TTAGTGAGTTATGCAAACGTTATCATGGGCTATTGAGTGAAATAAAGTGAGTTTCAACGTTTCGATTGAGCAGGAGCTAAAAAGCATGGCTCGGACAGCTTTACTTTTCCTTCTGGTTCTCAGCACGGTCCTACCGAACCGAGGGTCTGGACAACCATCGCGATCGAGGAAAGCCCCCCGAGCCAGACAAAGCGATGTAGGAGACGATGACTTGAAgtcgcagatcaacaagctgtgGCAAGAAGTGAACTCACTGAAGGAAATGCAAGCCCTCCAGACAGTATGCCTGCGTGGCACAAAGGCTAACAGAAAGTGTTACCTGACCATCGACGAACCCAAGCACTACCATGAAGCCAATGAAGACTGCATTGCTCAAGGAGGGACCCTGGCCATCCCCAGAGACCTCAATGAAAACAACGACCTGCAGGAGTATGCCAAGAGGAGCTCGCCTGGATCCAAGGAGTTCTGGATTGGAGTTACAGATATGGTGAAAGAAGGCCAGTACGTGGACGTGAACGGCATGCCCATCAGCTACTTCAACTGGGACCGGTCCAAGAGACAGCCCACAGGGggcaagagagagagctgtgtgATGCTCTCACTGAGCACCCAGGGGAAGTGGCACGACGAGGTGTGCCGCAGTGTGAAAAAGTACATTTGTGAATACCTCATCCCTTAACTGACACTCCACAAACAGGAGTTTTCAGTCCCGTGCTCTAATgtctaaaaattaaaaagatttggaggaaaacaaaatctcaggtgttttgagtttttaaacccccaaaacacacagcttttctttaaataagtgtttaaatATCTAACTTGGTTGCGCTAAGTCCCACTTAATAAACTAGTAAATGAGTAAATACGGTGATATAAAGTTAAAGTGTAACctgaacaaatatttttagaGAGGGGAATATGCTTGGTTTAACCACTGATAAAATATTGAAACTGTTGCATAGACTGAAAATGTACgcacagaaaacacaacctGACCTTGTTAACGCTACACCGTAGAGTTAGTTTACTGCAGTAAAGGTCTGAtgacgtgtttttttttttaactcaggTTCAATAactttataacttttttgaaatgcgtttttctg

Function

symbol description
clec3a Orthologous to human CLEC3A (C-type lectin domain family 3 member A).

NR:

description
PREDICTED: C-type lectin domain family 3 member A

GO: NA

KEGG:

id description
K17519 CLEC3A; C-type lectin domain family 3 member A

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00020531 True 1118 mRNA 0.44 3 24304634 24308160

Neighbor

gene id symbol gene type direction distance location
AMCG00020533 vat1l,LOC106562097,LOC106587190 coding upstream 33601 24251075 ~ 24271033 (+)
AMCG00020532 NA coding upstream 55383 24245541 ~ 24249251 (+)
AMCG00020534 LOC104940465,LOC106520303,LOC103466051 coding upstream 72235 24226001 ~ 24232399 (+)
AMCG00020536 NA coding upstream 79565 24216071 ~ 24225069 (+)
AMCG00020535 NA coding upstream 94260 24202314 ~ 24210374 (+)
AMCG00020537 map1lc3b,LOC107701564,LOC107714047,LOC107654145,LOC107581828 coding downstream 22726 24330886 ~ 24343935 (+)
AMCG00020543 NA coding downstream 139116 24447276 ~ 24453600 (+)
AMCG00020552 NA coding downstream 305713 24613873 ~ 24619867 (+)
AMCG00020553 NA coding downstream 314384 24622544 ~ 24630704 (+)
AMCG00020551 NA coding downstream 331638 24639798 ~ 24641669 (+)
G64009 NA non-coding upstream 61957 24232739 ~ 24242677 (+)
G63951 NA non-coding upstream 211397 24088514 ~ 24093237 (+)
G63948 kars,LOC107738348,LOC107584690,LOC107679917 non-coding upstream 228159 24075049 ~ 24076475 (+)
G63947 NA non-coding upstream 232474 24070716 ~ 24072160 (+)
G63898 LOC108433019,LOC103398424 non-coding upstream 404880 23898507 ~ 23899754 (+)
G64048 NA non-coding downstream 180744 24488904 ~ 24565492 (+)
G64069 NA non-coding downstream 285970 24594130 ~ 24597787 (+)
G64121 NA non-coding downstream 383837 24691997 ~ 24695554 (+)
G64122 NA non-coding downstream 388442 24696602 ~ 24696809 (+)
G64158 NA non-coding downstream 501804 24809964 ~ 24811811 (+)
AMCG00020529 LOC107090538 other upstream 236177 24033037 ~ 24068457 (+)
G63939 NA other upstream 249042 24051989 ~ 24055592 (+)
G63786 znf821,LOC107747380 other upstream 1229689 23070411 ~ 23074945 (+)
AMCG00020505 NA other upstream 1242485 23053798 ~ 23062149 (+)
AMCG00020487 NA other upstream 1895141 22356174 ~ 22409493 (+)
G64046 NA other downstream 170675 24478835 ~ 24482114 (+)
AMCG00020572 NA other downstream 754213 25062373 ~ 25076690 (+)
AMCG00020573 NA other downstream 769982 25078142 ~ 25084873 (+)
AMCG00020585 NA other downstream 1150936 25459096 ~ 25472886 (+)
G64372 NA other downstream 1242751 25550911 ~ 25553320 (+)

Expression


Co-expression Network