G63939


Basic Information

Item Value
gene id G63939
gene name NA
gene type unknown
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 24051989 ~ 24055592 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU79994
TCCTGAATAGAAATGAAGCTCTGCACAAGGCGCTATTTTACAGCTGTCTTTTTTATTGAAAGTTCCACAGAAACCAAGGTTTACTTCTTCTTCTCCACATCCTGCTCTGCAGCCTCCTTGGCTCTCTTGGCACGGATGCCGAAGAGACGGGCGTTGGCGCGGGCCATACGCAGGCTGGCGAACGCCTTGAAGTTCTTTTCGTCCTCAGAGATGACCCGGGCCTTCTCCTTCTTGTGCACCTGCACAGAAAACAAGGTCTCAGCAGCTGAtactctaacacacacactggaaacTGATGGCAGTTTAGGTAGCTGGGATGTGCATACCGGGAAGGGTGTGTTTGCCCAGTTATGCATTCAAAAAAACTAGgtctcattcatttaaataattgagacACCAAGCAGTCATCAGCTAAAAAGGGTTCAACGGAGGTCATCAATAAAGTACAGAGATTCCGGAGAAATTGTCATCATCTGACTGCTTTAAGATTAATTATGCTCCCAACTTCAActagggatttaaaaaaaaatctccatgTTAACCCTGGGTTCACTAGCAGTCTTTGGAGAACACCACAGTAGGGAGAAGTACAGAGATAGAAACATGCATGTTACAGTGAAACAAGCCCTTAATGCACACGTGTCACATTCAGAAACATACTGGAGGGTTTACTTACATTCCTGATTGGCATGATGGGTCCAGTCAGCTGAGTGGCCATCTTGAGCTCTTCAGCCTAGAGAGAGAAACAGAGCTGTCTCCCTTCCTGGGTGCAGAGGCCTTCCTGGGGAAGAGGATGAGTTTGGAGCGGTACTCCTTCAGACGCTGCACGTTGGTCTGGAGGGACTCTGCAGATCTGTTGCGGCGCCGGGAGTCCACGGCAATGCCAATAGTGCGGGCCACCTTCTTGTGGATACCAGCAGCCTAGGAGACATTTCACACTGAATTAACTGGAAGTTGCCTGCAGTACAAACTGTAAATACTGAGCCTTTGAGTATCTTTAAATTGACACAAAGCAGTCATCAGCTGGAAAAGGGTTCAACGGAAGTCATCAATGAAGTACAGAGATTCCGGAGAAATTGTCATCATCTGACTGCTGGGAAATTGACTGGAGTTCATTTCAACCACAGGGTTAGTAAGTATTAATCTAACCTGTACAGACATTGTCTTTGGGATGCATTGAGTGCAAAGTTTCATGTGAGAAGACGGTTTAATCTGTAGTTTTATTGCATCTGTTAATGGTGACTTTTTAAACCCTGAAGGTAGGGGGGCATGAATCAACATGCTGTGACTCTTACTGTTGCTGTAATAGCTGTTGGTCAATTTTCCAAATCATGCATAAAACAAGTGAACGTGCATCTATGCCACAGAACAGGAAGTGTTCCCTCAACAAATTAAGAGTGCTCAGTGAGCAATGGCCTaccttcagctcctccagggTGAAGCCCCGACCAGCACGCACTTTGGTGTGGTACCTAATTGTGGGACACCTCACTGAAGGTCTCAGGGGGCCGGCCACAGGACGAGGGGCGATGCGACGAGCCTTAGCCTGACGCGCTCTTCGCCTGGAGAGGAGAAACGACAGAACAGAAGGGATGAGCAAAAATAAGTGCAACTAATC
>TU79996
TCCTGAATAGAAATGAAGCTCTGCACAAGGCGCTATTTTACAGCTGTCTTTTTTATTGAAAGTTCCACAGAAACCAAGGTTTACTTCTTCTTCTCCACATCCTGCTCTGCAGCCTCCTTGGCTCTCTTGGCACGGATGCCGAAGAGACGGGCGTTGGCGCGGGCCATACGCAGGCTGGCGAACGCCTTGAAGTTCTTTTCGTCCTCAGAGATGACCCGGGCCTTCTCCTTCTTGTGCACCTGCACAGAAAACAAGGTCTCAGCAGCTGAtactctaacacacacactggaaacTGATGGCAGTTTAGGTAGCTGGGATGTGCATACCGGGAAGGGTGTGTTTGCCCAGTTATGCATTCAAAAAAACTAGgtctcattcatttaaataattgagacACCAAGCAGTCATCAGCTAAAAAGGGTTCAACGGAGGTCATCAATAAAGTACAGAGATTCCGGAGAAATTGTCATCATCTGACTGCTTTAAGATTAATTATGCTCCCAACTTCAActagggatttaaaaaaaaatctccatgTTAACCCTGGGTTCACTAGCAGTCTTTGGAGAACACCACAGTAGGGAGAAGTACAGAGATAGAAACATGCATGTTACAGTGAAACAAGCCCTTAATGCACACGTGTCACATTCAGAAACATACTGGAGGGTTTACTTACATTCCTGATTGGCATGATGGGTCCAGTCAGCTGAGTGGCCATCTTGAGCTCTTCAGCCTAGAGAGAGAAACCCAAAAGCAAATTCACTGAAGAGCCTGAAGCATTCTGGGAGATGCACTTTGAAAGGTATAAAGGGTCTCCAATTCTGATAAAATCAATAAcacccctttttttttaaaaaaaaaaaacacagcttgaCCTCCAACCCAACAGGTTACTATTCTACCCTTCCCAACTCAATGGGTCCTGCATTGTCCCCATGAATACACGGCCGAAGTCTTGCACTTCGGCAGGCCAGGAGCCGGTCCCTACCCACCCCTCGATCCCAGTGCAGATACTCACAGAGCTGTCTCCCTTCCTGGGTGCAGAGGCCTTCCTGGGGAAGAGGATGAGTTTGGAGCGGTACTCCTTCAGACGCTGCACGTTGGTCTGGAGGGACTCTGCAGATCTGTTGCGGCGCCGGGAGTCCACGGCAATGCCAATAGTGCGGGCCACCTTCTTGTGGATACCAGCAGcttcagctcctccagggTGAAGCCCCGACCAGCACGCACTTTGGTGTGGTACCTAATTGTGGGACACCTCACTGAAGGTCTCAGGGGGCCGGCCACAGGACGAGGGGCGATGCGACGAGCCTTAGCCTGACGCGCTCTTACCTGCGGAGCTTCCTGGCAGGCTGGTTGAACCAGGTGCGGACTCTCTTCTGCCAGTCTTTGTGGAAGTGAGGGTTCAAAAGCATGCCATTCCGACTGGGGGCCATGGTTCCTTAATTCCCTGTTTAGTAAAGAGAAAGATAATTCATAAAAATCAGGCACTTTTACAAATGGGACATGCACAGAAAGCAGAGTATAGTAATGCATGCATTGTCCACGGACACTAGCCAAAACAGCACCCTACAACTTCCAAGAGGTCAAAGCTTCTGTTTAGCTACAGATCTGGAAAATCTGCATTTAATCGTTTTGTTATTCACTAACGATTTAAACCTGCATCTGTTTTACAGGCCTAACACCTCATTGCATCTCCTGCAAACATGCCTTCATAACATCCCACCATCTCCGCAGCCTCGACTTGTTAGGCTAAGACGTCTTCAGTACTTTCTTGACAAGCCACATAAGCCAGTCGACCACCCTGATGAGTGGGTGCGTTTTTGCAGGCCGTAGTCATCAGATAGAAAAGGGTTCAAGGAGAATCATCAACAGAATTACAGAGATTCCGGAGATTTATCATCACACGACAGGGCCTCAAAATCCTCACAGGGAACCTGGTTTTAAAGTTGCAGCTTCTTCTGTAACAATGCATTTGGTTATATGTACAGTCCACGGTCTTATTAACGTATAGTAACACGTTGACATTCAAAATGTGTAACTGCTACCAAAAATACACCAACTACTGTGAGAATACGCATTTCTTAACACCGATTGATGTTATACTTTAATATCCAACAGGTTTTATCCTCTTGATACTATATTATGACCAACCATGTACATTTCAGAGCGCTCAAACGCCGTGGCAGATTCCcagaaatgaacaaaacacagGGTATATTTCAGTCCCTTTTCAACATGCCCTCAAATCTGTAAATTTCATTTCACActcaacaattaaaacatgaacgTCGCCGTGCTCAGAGAGCGAAACACGCTTTAATAAGGCAGCAGCATGGAAGACTGAACTGATACAAGCGGTACATGTAGCGTTAAGGACCCCACCAGCCATGTATACCACTGGGATAAAAGCATCCATTAGCAGACAGTCACAATATTCTCATCTTCTGAAAGagcacacactacactacacatcTCGGCAGTACGGATGGACACAGTTATTATCAAACTCTGGATTAACATAGATTTCATTTCTACTTAATCAAGCCCATTTCCACATACCGTCCAGGGAGAAAATG

Function

NR:

description
PREDICTED: ATP synthase subunit gamma, mitochondrial isoform X2

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0019538 protein metabolic process biological_process
GO:0043603 cellular amide metabolic process biological_process
GO:0043604 amide biosynthetic process biological_process
GO:1901564 organonitrogen compound metabolic process biological_process
GO:1901566 organonitrogen compound biosynthetic process biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:0043043 peptide biosynthetic process biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0006412 translation biological_process
GO:0010467 gene expression biological_process
GO:0044237 cellular metabolic process biological_process
GO:0044238 primary metabolic process biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0044267 cellular protein metabolic process biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0071704 organic substance metabolic process biological_process
GO:0006518 peptide metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0006807 nitrogen compound metabolic process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process

KEGG:

id description
ko03010 Ribosome
ko03050 Proteasome
ko05169 Epstein-Barr virus infection

RNA

RNA id representative length rna type GC content exon number start site end site
TU79994 False 1618 TUCP 0.47 2 24051989 24053877
TU79996 True 2579 TUCP 0.46 3 24051989 24055592

Neighbor

gene id symbol gene type direction distance location
AMCG00020522 NA coding upstream 80415 23925180 ~ 23971574 (+)
AMCG00020520 NA coding upstream 194186 23813512 ~ 23857803 (+)
AMCG00020517 zfhx3 coding upstream 369687 23657711 ~ 23682302 (+)
AMCG00020519 zfhx3,LOC105888974,LOC106533552 coding upstream 440843 23608590 ~ 23611146 (+)
AMCG00020518 zfhx3 coding upstream 469249 23575106 ~ 23582740 (+)
AMCG00020528 NA coding downstream 1502 24057094 ~ 24062675 (+)
AMCG00020530 psmd7,LOC107584693,LOC107659147,LOC107553010 coding downstream 104685 24160277 ~ 24163714 (+)
AMCG00020535 NA coding downstream 146722 24202314 ~ 24210374 (+)
AMCG00020536 NA coding downstream 160479 24216071 ~ 24225069 (+)
AMCG00020534 LOC104940465,LOC106520303,LOC103466051 coding downstream 170409 24226001 ~ 24232399 (+)
G63898 LOC108433019,LOC103398424 non-coding upstream 152235 23898507 ~ 23899754 (+)
G63890 NA non-coding upstream 154234 23850350 ~ 23897755 (+)
G63789 NA non-coding upstream 965056 23086378 ~ 23086933 (+)
G63787 NA non-coding upstream 974676 23076901 ~ 23077313 (+)
G63784 NA non-coding upstream 981840 23068311 ~ 23070149 (+)
G63947 NA non-coding downstream 15124 24070716 ~ 24072160 (+)
G63948 kars,LOC107738348,LOC107584690,LOC107679917 non-coding downstream 19457 24075049 ~ 24076475 (+)
G63951 NA non-coding downstream 32922 24088514 ~ 24093237 (+)
G64009 NA non-coding downstream 177147 24232739 ~ 24242677 (+)
G64048 NA non-coding downstream 433312 24488904 ~ 24565492 (+)
G63786 znf821,LOC107747380 other upstream 977044 23070411 ~ 23074945 (+)
AMCG00020505 NA other upstream 989840 23053798 ~ 23062149 (+)
AMCG00020487 NA other upstream 1642496 22356174 ~ 22409493 (+)
AMCG00020470 NA other upstream 1909791 22135368 ~ 22142198 (+)
AMCG00020438 NA other upstream 4415768 19631325 ~ 19636221 (+)
G64046 NA other downstream 423243 24478835 ~ 24482114 (+)
AMCG00020572 NA other downstream 1006781 25062373 ~ 25076690 (+)
AMCG00020573 NA other downstream 1022550 25078142 ~ 25084873 (+)
AMCG00020585 NA other downstream 1403504 25459096 ~ 25472886 (+)
G64372 NA other downstream 1495319 25550911 ~ 25553320 (+)

Expression


Co-expression Network