RNA id: TU79996


Basic Information

Item Value
RNA id TU79996
length 2579
RNA type TUCP
GC content 0.46
exon number 3
gene id G63939
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 24051989 ~ 24055592 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TCCTGAATAGAAATGAAGCTCTGCACAAGGCGCTATTTTACAGCTGTCTTTTTTATTGAAAGTTCCACAGAAACCAAGGTTTACTTCTTCTTCTCCACATCCTGCTCTGCAGCCTCCTTGGCTCTCTTGGCACGGATGCCGAAGAGACGGGCGTTGGCGCGGGCCATACGCAGGCTGGCGAACGCCTTGAAGTTCTTTTCGTCCTCAGAGATGACCCGGGCCTTCTCCTTCTTGTGCACCTGCACAGAAAACAAGGTCTCAGCAGCTGAtactctaacacacacactggaaacTGATGGCAGTTTAGGTAGCTGGGATGTGCATACCGGGAAGGGTGTGTTTGCCCAGTTATGCATTCAAAAAAACTAGgtctcattcatttaaataattgagacACCAAGCAGTCATCAGCTAAAAAGGGTTCAACGGAGGTCATCAATAAAGTACAGAGATTCCGGAGAAATTGTCATCATCTGACTGCTTTAAGATTAATTATGCTCCCAACTTCAActagggatttaaaaaaaaatctccatgTTAACCCTGGGTTCACTAGCAGTCTTTGGAGAACACCACAGTAGGGAGAAGTACAGAGATAGAAACATGCATGTTACAGTGAAACAAGCCCTTAATGCACACGTGTCACATTCAGAAACATACTGGAGGGTTTACTTACATTCCTGATTGGCATGATGGGTCCAGTCAGCTGAGTGGCCATCTTGAGCTCTTCAGCCTAGAGAGAGAAACCCAAAAGCAAATTCACTGAAGAGCCTGAAGCATTCTGGGAGATGCACTTTGAAAGGTATAAAGGGTCTCCAATTCTGATAAAATCAATAAcacccctttttttttaaaaaaaaaaaacacagcttgaCCTCCAACCCAACAGGTTACTATTCTACCCTTCCCAACTCAATGGGTCCTGCATTGTCCCCATGAATACACGGCCGAAGTCTTGCACTTCGGCAGGCCAGGAGCCGGTCCCTACCCACCCCTCGATCCCAGTGCAGATACTCACAGAGCTGTCTCCCTTCCTGGGTGCAGAGGCCTTCCTGGGGAAGAGGATGAGTTTGGAGCGGTACTCCTTCAGACGCTGCACGTTGGTCTGGAGGGACTCTGCAGATCTGTTGCGGCGCCGGGAGTCCACGGCAATGCCAATAGTGCGGGCCACCTTCTTGTGGATACCAGCAGcttcagctcctccagggTGAAGCCCCGACCAGCACGCACTTTGGTGTGGTACCTAATTGTGGGACACCTCACTGAAGGTCTCAGGGGGCCGGCCACAGGACGAGGGGCGATGCGACGAGCCTTAGCCTGACGCGCTCTTACCTGCGGAGCTTCCTGGCAGGCTGGTTGAACCAGGTGCGGACTCTCTTCTGCCAGTCTTTGTGGAAGTGAGGGTTCAAAAGCATGCCATTCCGACTGGGGGCCATGGTTCCTTAATTCCCTGTTTAGTAAAGAGAAAGATAATTCATAAAAATCAGGCACTTTTACAAATGGGACATGCACAGAAAGCAGAGTATAGTAATGCATGCATTGTCCACGGACACTAGCCAAAACAGCACCCTACAACTTCCAAGAGGTCAAAGCTTCTGTTTAGCTACAGATCTGGAAAATCTGCATTTAATCGTTTTGTTATTCACTAACGATTTAAACCTGCATCTGTTTTACAGGCCTAACACCTCATTGCATCTCCTGCAAACATGCCTTCATAACATCCCACCATCTCCGCAGCCTCGACTTGTTAGGCTAAGACGTCTTCAGTACTTTCTTGACAAGCCACATAAGCCAGTCGACCACCCTGATGAGTGGGTGCGTTTTTGCAGGCCGTAGTCATCAGATAGAAAAGGGTTCAAGGAGAATCATCAACAGAATTACAGAGATTCCGGAGATTTATCATCACACGACAGGGCCTCAAAATCCTCACAGGGAACCTGGTTTTAAAGTTGCAGCTTCTTCTGTAACAATGCATTTGGTTATATGTACAGTCCACGGTCTTATTAACGTATAGTAACACGTTGACATTCAAAATGTGTAACTGCTACCAAAAATACACCAACTACTGTGAGAATACGCATTTCTTAACACCGATTGATGTTATACTTTAATATCCAACAGGTTTTATCCTCTTGATACTATATTATGACCAACCATGTACATTTCAGAGCGCTCAAACGCCGTGGCAGATTCCcagaaatgaacaaaacacagGGTATATTTCAGTCCCTTTTCAACATGCCCTCAAATCTGTAAATTTCATTTCACActcaacaattaaaacatgaacgTCGCCGTGCTCAGAGAGCGAAACACGCTTTAATAAGGCAGCAGCATGGAAGACTGAACTGATACAAGCGGTACATGTAGCGTTAAGGACCCCACCAGCCATGTATACCACTGGGATAAAAGCATCCATTAGCAGACAGTCACAATATTCTCATCTTCTGAAAGagcacacactacactacacatcTCGGCAGTACGGATGGACACAGTTATTATCAAACTCTGGATTAACATAGATTTCATTTCTACTTAATCAAGCCCATTTCCACATACCGTCCAGGGAGAAAATG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU79949 lncRNA upstream 152235 23898507 ~ 23899754 (+) True G63898
TU79937 lncRNA upstream 154234 23850350 ~ 23897755 (+) True G63890
TU79811 lncRNA upstream 965056 23086378 ~ 23086933 (+) True G63789
TU79809 lncRNA upstream 974676 23076901 ~ 23077313 (+) True G63787
TU79804 lncRNA upstream 981840 23068311 ~ 23070149 (+) True G63784
TU80010 lncRNA downstream 15124 24070716 ~ 24072160 (+) True G63947
TU80011 lncRNA downstream 19457 24075049 ~ 24076475 (+) True G63948
TU80015 lncRNA downstream 32922 24088514 ~ 24093237 (+) True G63951
TU80086 lncRNA downstream 177147 24232739 ~ 24242677 (+) True G64009
TU80136 lncRNA downstream 433312 24488904 ~ 24540707 (+) False G64048
AMCG00020522 mRNA upstream 80415 23925180 ~ 23971574 (+) True AMCG00020522
AMCG00020520 mRNA upstream 194186 23813512 ~ 23857803 (+) True AMCG00020520
AMCG00020517 mRNA upstream 369687 23657711 ~ 23682302 (+) True AMCG00020517
AMCG00020519 mRNA upstream 440843 23608590 ~ 23611146 (+) True AMCG00020519
AMCG00020518 mRNA upstream 469249 23575106 ~ 23582740 (+) True AMCG00020518
AMCG00020528 mRNA downstream 1502 24057094 ~ 24062675 (+) True AMCG00020528
AMCG00020529 mRNA downstream 7161 24062753 ~ 24068457 (+) False AMCG00020529
AMCG00020530 mRNA downstream 104685 24160277 ~ 24163714 (+) True AMCG00020530
AMCG00020535 mRNA downstream 146722 24202314 ~ 24210374 (+) True AMCG00020535
AMCG00020536 mRNA downstream 160479 24216071 ~ 24225069 (+) True AMCG00020536
TU79808 other upstream 977044 23070411 ~ 23074945 (+) True G63786
TU79558 other upstream 1679229 22358828 ~ 22372760 (+) False AMCG00020487
TU79495 other upstream 1909832 22135368 ~ 22142157 (+) True AMCG00020470
TU79182 other upstream 4415768 19631325 ~ 19636221 (+) True AMCG00020438
TU79166 other upstream 4451252 19597238 ~ 19600737 (+) False AMCG00020439
TU80130 other downstream 423243 24478835 ~ 24482114 (+) True G64046
TU80333 other downstream 1018465 25074057 ~ 25076690 (+) True AMCG00020572
TU80336 other downstream 1022550 25078142 ~ 25084754 (+) False AMCG00020573
TU80525 other downstream 1495319 25550911 ~ 25553320 (+) True G64372
TU80958 other downstream 3360404 27415996 ~ 27418520 (+) True G64730

Expression Profile