RNA id: TU79808


Basic Information

Item Value
RNA id TU79808
length 4535
RNA type TUCP
GC content 0.41
exon number 1
gene id G63786
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 23070411 ~ 23074945 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTTATTTCGACATTCTATACCTGCTTTCAGTATCATTTGTACATATCTGTTAATCCAGCAACAGAGAATGGATCCCAAACTGACCATTCACAACACATGACACACAACATGACTATCATAAATACAGAGTGTTCCTTTTCAAGTTTCCCccccttttaattatttttggcCTTTTAGTTTCTTTTGTAAACATGAACAACCAGAGTGTATCCTGAAAAACTAACCAAAGGccaatagttttaattttactcTAGAATCAGTTTTCCTtgacaaataagaaaacaaaaatgggcAGGCATATTATTACTTATAGCTCAACACTATCTCATATTTAACAattctaaaacaaatgcagtttaCAACATGCAGTGTTAACCTAAACCAGTCTTGTGTAGCCAGGCCAAGCTTTTTacaaagcccccccccccccccccccccccccccatctgcAAAGGGCTTATAATAACTGGGTAGAATCagtatttcatataaatatggaaaataatttcacatggtaatttaactttttatacttttattccATGGTTTTTGAAGGATACCACGTTTACTTTAAATTCAGCACCCTAATCAAAGAAAATCTATTACCAAATGCAAAAACTGTTTATACCCGTCATTCATTCCACGATGATGTCAGTATCTCTAGACACTGCCACTCTATAATATACTTACTGCAAGTACAATAATGCATAAAACTGCTTGAATAAATTATACAAGACAAATATTCTGTAAGTGAATAACTATCAGTCTTAGGCCATagtatgttaaatatttatcacCAATTGTTTGCTCAGTCTTTGCTTCTGAATGGAAGTGCATAAACTACAGCCAATTATTGTTCTAAAATCTTTCAATATCGGGtgcatgctttgtttttcagtatgGTAATAGAGGCCttgtttacagaaaatgaacCACTTCTCAAATCCAGCCCCCTATAACAAATCCTTGATTAGGGTGCTGAATCAACAGTACAAAGCTATTCTGAGATGCACTGCCTGAGTTGCATGAATTAAGTTTTCTGTCCATTTCACCTTACAATCTGCATAGTTATAGAAAATGTCAATTTTCCATCAGTAGGAATTAACTCCTATTGCATAGCAGTTTGAACTGCTCCAGGTGccaggttaaaaataaaaacaaaaacaaaaacaaacacgcaaaactataaaaataaaataaaagtaatcttGATACAAGTGTCTAACCTGACTTATTACTTGGAATGGCTCAAACAGAATACCAGTCTTGTTTCCCATCTTGATTAGAGTTCCAGTATAAAAAGATTCCActatacatgtgttttatagTCTAAATTCATTTCAATTgggttacattaaaatgtaaaaaagaccCTTTATAATGGATCTTGTGACAAATTTCCTCATCTAAAATATTTGTAGACGGCCTCATCCCTCCAACATAATTTAATAGTGAGAAATGTCTTGTTAATGCATGACTGAGTGTTTCTAATGAATTATGCTGTATTACAATCAAGTGTTACTAATATTTGAAATCAGCATTGGAAAAAGCTAATGTAGCAAAATCTCAACCACAGAACTTTCCAACAAGAAAGGCAAAGCCatcatgcatttataaattacTGGGCTGGGAAAAACCACTTGAATAAATATtatgttcaaaatattatattaattctaGGCTGACCACTAGCAAAGACTATTAGCATTTTCAGTTCATGTGACAGGCCCTGCTGTCTCCGAGTACAAGAAAGAGACATACGCATATTATACAGTAATAGCAGAACAAGATATTGAGTTTAGTTGAGGCTCTTCCATACaattatgccccgtttccactggtcATGTTTAAGTGCACATTGGCCTGTCCGTTTGAGTCCAGGCATCTCTACGGTTGCTGAGGTGCACCTCCACCTGCAcccaaactagtttcaggagaTACAGTTTCATATATCACACCTGCcgagtcccaaactggtctaGGAGACCGTTATATCCAATAATAACTACAATAATGGCCGCTGTAAGAGAGACGGTAGAAACTTTTCCCAAGAAAgaatgtgtgtttaccttgtgAAGATGATGAAATTAGAGCACTTATTAATGTATGGTTGGAAAGTGCCATACAGGATGAATTGCTTGGAACaggaatacatttacattttttaaaagatcctgctggagaaagcaCTGCACCGGACTACAATAGTGCagtgacaaaatgaaaaaactaaaaatacagtacaaaaaggTTAAAGATGCTAACAACAAAAGTGGTAACTTTTGTTTCAATGCTGTTTGACCTTTGGTgtctcacattcacttcctgGGGCAGCTGTAcctaacaaaaatataatgcaatcGCAGGCAGCAGTTTTCAGGTGTATGGGTACGGCACAGACAGAACAAGGTGCACCAAAGCACGGACAGTGGAAACATCACAGTTGCTGAATTCTGCTAACCCTGTGGACCACTTGATGGGCCTAAATTAAAAACCAATTTGCTAAATCAACATTACAGCACGTGACACTTTAGTTTTTAAAGTTTGTAAGTTACAAAGGGAGGATGTCTGACAGGTAAAGAAGGAAATGGTgtgtaaaagaaaatcaaaccatAGGCTTTTCTCTTTATACACTGAGGCAGACACCTCCATGGTGGCTACCCTAAACCTAGCAGGTTTAATTCCCTGTGtgtgatttagtttttgttcaTATGCAGAAGTAAGGAAGAAGTAAAATATGGCATAAAGTAACAGACATtaaagaggagagggaggtcaCTATGCATTGTAAAAGTGAACAAAATATCTTGAGTCCCAAAGTTATAAATACAGTGAATAATATGGAATTAAAAGGCCTAATGTTCCAAGTGGTCCACAGAGTAGGAAGAATTTAGTTACTGCCAAATCTACCCAGAAAAATACCTGTAGTGTGCAGGAAACAGGTTTGAAAGTGTGACTGTAAATGTGCTATTAACTGGACACATTCAAAACCTATtccgcttttttttttttttacagtactgttttttactatatatatttgtgtgtgtttatatacacgtgtgtatgtacacacacatacacatttaaaaaaatcagacattataaaataaaggaaataaagtaTCTCTTCTACATTAGATTCTAGGTTGAGTCCTGGTATTAGGGTGTGTTGGTTAGGTGAGGTGTGGGAGATTGGGGAATGGGGGATGGGTcaggagagacagaaaaagtTCTTTGTCAATTCAGAGAGCATGTGTATGCCAGTACCACgatcattctctctctctctctaccggCACACTAATCCTTTATCAGTACAACTATTTGAGTCCAAAATTAGGCCACTAGACAGTGCGAGTACTGCCAGGTCCCATCGCGAGGTAGTAGATTCAGTGGATATGAACTAGCCATTGACCCACATTGGCAGCGTCAGGAGTAGCTGCCAGTAAACTCCAGCCACAGGCCGGCAAATTCTATCAGCAGGGAGGTGACGAGTGAGCCACTTTAACCCATTATCATCACCACTTGTTGATGAACAAACATTTCTTGGACTGTAAGTGTCTATTGTTCAATACTAGTTAAATTAGGTTTTCAATCAATCACTcaggaaaaaaagaaggaaCAATACAAAGTCTGTCGAACATGCTGTTTCACATCAGGCATTGGGCTTCTACAACATTCTTCAGTCTCTTGATGCTAAATTCTCCAGACACTCACCCACGGTGACCATTTCttctctctttaaaaataaaagtgttctCAGCTAGCTGAGTCAATTTTCAAACTTTACAACCGTTTGGATACGTTCACTGTTACGATCATGTACTCTACGTTACTCAAATGATGGAGGCTGAGTGGACTGGTgggtgggagagagggacaaCAGCAAAGAAGGTACAGTCAAGCCCAGTGGAGATTCGTTTTGCTATGTGAACCCTGACAAGAGAAGCAGAAACTGAACCGGGGGTGACTGGTCTGGCAAAGCGTCTCATGTTGAAGACGCGTGCGTGCTTGAGAGCAGCAGCCTTGGCAGCAGGGAAGAGGGGGAATGGGGCTCGCTAGGGCAGCTTCATGAAGAGGCCGTTGTCCAGGGAGGGGCAGGGCATGGGGAACTGGAACAAGCTCATGTCAGCCGTGAGTGCTGCCATGGCAGCAGGGTCATGCTCGATCTGGTTCCTTAGGCTGGGGTCGATTTTCTCCAGCCTGCGCTTGAGCCGCTTGGCCTCCCTCTCGCGGATGAGCCTGGCCTGCCTCTTCTCGGGTGTCTCGTTGGCCCTCTTCAGACGCATGGCCTCCCGGTCCCGCTGCAGACGCCGTGCCCTCTGCTCCTCTGTCTCCTGCATCCTCTGCAGCCTCTTGGCCTCACGGTCCCGTAGCCTCCTCAGCTCGCGCTCCTCGGGTGTCTCACAGGCCCGCTTGGTCTTCTTGGCCGTGCGCTCACGCTCCAGTCGCTGCATCCGGGCCTCCAGAGGCTCATTCTGCCGGCGGATGGCCCACTTCCTCATGGAGGGTGACTGCGCCTCCACCAGCTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU79804 lncRNA upstream 262 23068311 ~ 23070149 (+) True G63784
TU79803 lncRNA upstream 12011 23053798 ~ 23058400 (+) False AMCG00020505
TU79791 lncRNA upstream 96320 22973878 ~ 22974091 (+) True G63772
TU79568 lncRNA upstream 679170 22383517 ~ 22391241 (+) True G63592
TU79532 lncRNA upstream 687920 22352173 ~ 22382491 (+) True G63564
TU79809 lncRNA downstream 1956 23076901 ~ 23077313 (+) True G63787
TU79811 lncRNA downstream 11433 23086378 ~ 23086933 (+) True G63789
TU79937 lncRNA downstream 775405 23850350 ~ 23897755 (+) True G63890
TU79949 lncRNA downstream 823562 23898507 ~ 23899754 (+) True G63898
TU79992 lncRNA downstream 958092 24033037 ~ 24065337 (+) True AMCG00020529
AMCG00020505 mRNA upstream 8262 23058288 ~ 23062149 (+) True AMCG00020505
AMCG00020508 mRNA upstream 17724 23045179 ~ 23052687 (+) True AMCG00020508
AMCG00020506 mRNA upstream 68565 22994296 ~ 23001846 (+) True AMCG00020506
AMCG00020507 mRNA upstream 108680 22953442 ~ 22961731 (+) True AMCG00020507
AMCG00020500 mRNA upstream 153578 22909385 ~ 22916833 (+) True AMCG00020500
AMCG00020514 mRNA downstream 16309 23091254 ~ 23113539 (+) True AMCG00020514
AMCG00020512 mRNA downstream 45179 23120124 ~ 23161895 (+) True AMCG00020512
AMCG00020513 mRNA downstream 96855 23171800 ~ 23205292 (+) True AMCG00020513
AMCG00020515 mRNA downstream 139444 23214389 ~ 23232308 (+) True AMCG00020515
AMCG00020518 mRNA downstream 500161 23575106 ~ 23582740 (+) True AMCG00020518
TU79558 other upstream 697651 22358828 ~ 22372760 (+) False AMCG00020487
TU79495 other upstream 928254 22135368 ~ 22142157 (+) True AMCG00020470
TU79182 other upstream 3434190 19631325 ~ 19636221 (+) True AMCG00020438
TU79166 other upstream 3469674 19597238 ~ 19600737 (+) False AMCG00020439
TU78921 other upstream 4736379 18332569 ~ 18334032 (+) True G63045
TU79994 other downstream 977044 24051989 ~ 24053877 (+) False G63939
TU79996 other downstream 977044 24051989 ~ 24055592 (+) True G63939
TU80130 other downstream 1403890 24478835 ~ 24482114 (+) True G64046
TU80333 other downstream 1999112 25074057 ~ 25076690 (+) True AMCG00020572
TU80336 other downstream 2003197 25078142 ~ 25084754 (+) False AMCG00020573

Expression Profile