RNA id: AMCG00020505


Basic Information

Item Value
RNA id AMCG00020505
length 2580
RNA type mRNA
GC content 0.61
exon number 2
gene id AMCG00020505
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 23053798 ~ 23062149 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAAGCCTGCTCACGAGCGCAACCAGGAGTGCCTGCCCCCTAAGAAGCGGGACCTTCctcacaacagcagcagcagtgggaCAGCGGGGGGCACAGGggccggaggaggaggaggaggaggaggaggtggaggtggaggtggaggtgccACAGGTGTAGGAGGAGGAGCAccaggaggtggaggagggggagggggagatgaATTGCCCTCCACACGCAGCTCAGGCTCCACAGGAAGCGAGGCCCCAGGGGCAGCCAGCACTGGAGAGTGGATGCGGGTCCAGCCGGGGCTGCATTACAGCGTGGAGACCTCCGAGGGCATGAGCGTTCCCATAGATCAATACGGCATGCTCTATAAAGTAGCCCTGCCTTCCGGCACCTACTCTCCTACCAGCCTGCACCCTGTGTTGAGTCACCTCTCCCCCGCCTACGGTGTCCCCTCCCCACTCCTGCAGCACCCAGGGATCCCCTACTCGCCACTGGGTTACACCCAAATCCCTCACTCTTCCTTGCAGTTCGTCAGTTCCCCATACGCTGTCCCGTACGCGGTCCCGCCTGGCTTCGTCCCCAGTCCCTTAATATCACCCCAGTCGGCCATCCCTCAGCCTCACCACGTTTCCCATCTTGTGCCCTATCCTTCAGTCATACAGGAGGGAGTGGTCTCCcctcctcctcagcctcagACCCCAGTCCACGCTTTCACCAAAGTGGCCTCTGCAGCAGGTGTCCCTGTGGTGCTGTCTTCTGAACAGGCAGCACAGCAGcttcagcagcagcaacacatGGGGGCCACTGAGATCAGTACCAGGGGAGTGCCAGTCTTCTACCATCACCCAGCCCCCCGAGCTGCGCCAGCTCCCGTGGCGGCCTACAGAGATTCTCGCAGTGCCcagcaggagagggagaaggaggtgaacggaggagaggaggagcagGGTAGCCGGGAGCTGCATCCGGACTCTGTCTACTCCCCCAGGAATGTGAGGGTGCTGCATGTGATGCACAGCTCGGCCCCGGCAGATGGCCCAGAGAACAGGCACCATGTAGCCCTGCGGCACGAGGAGAGAGCCTCGCCAGGCCACCGGAGCACCCCCGACACTGACCTAGAGGTGCAGCAGGTGGTGGGGCGTCTGGCATCCCCTAATCAAGGCATGATGGGCAGTCGAAAAGAGGCCTCCTTAGGCCCCCTTAACCTGTCGCAGGGTTCGCACCGGGGCAGGGAGCCCCTGCCAGCAGCTCGTGGAGGGGGCAACATCCGGGAGGAGATGGCCATGCAAACCAGGCCTGTGTATGCAGGGCATACCATGGGGCTGGGTGACTCCACAGCACAACCCAGCCACCATCACCAGCTGGGGCAGCAAGCTCACCATGCTGTGATCCTGGCCAATGGGCAGCCTGTACTTGTGCCTCTGGATCACCATCAGCAGCTACAACAGCAGCACCCAGGCTTACATAACAACAATGTCATCACAGTGACTACGGCATCACCACTTGAATTCTCAAAAGCTTCCGACCCTCCGGCCAGAGCGTGCCTCCCAGAGAGGGCTGGGGTACTGGAGTTTTCAgcccaacagcagcagcagcagcagcttcaaCCCCCTGTAGTGGTTCAGGCTCCAGCACCTGCCCTTCCACCTCCAGTTCCTACTCCTGTTCCTGCTCACGTTCCTATTCCAGCtcctgctactgctgctgctgctcctcccCATCCCTCTCACTTCATGAAGGGTGCCATCATCCAGCTGGCCACAGGGGAGCTGAAGCGCGTTGAGGACCTGCAGACCCAGGACTTTGTGCGGAGCGCTGAAATGAGTGGCGGCCTGAAGATTGACTCCAGCATGGTGGTGGACATCCGCAAGAGCCAGCAGCGGCCTGGTCTGGTCTCCCTGCACTTCACAGTTGGGGAGCAGCAAAGTAAGGTGACCATAGATGTCCCCCCTGAGCAcccattctttgtttttggcCAGGGCTGGTCCTCCTGCAGCCCTGACCGCACTGTCCAGCTCTACGGGCTGTCCTGCCATCGCCTGCAAGTGGGCGACGTCTGTGTCTCGCTGAccttgcagcagcagcagcagcagcagcaacagcaacaacaacaggcaCAAGCCAGGACCTCCAACACTGCTAACAGCAGTTCTGCAGCTAGTATCACCTCCCAGTCCATGGTACCCCCAGCACCCCAACACCTGAGGGTCCCATCCCAGTTAAGATCAGACAGGACTCaccgggagagggagagggaggaggaggaggaggaggaggaggaggagcccaTGCAGGTAGGGGCGATGGGGCTGGGGGATGCAGCCTCCCAGTCAGACAGGACTTCTGCAGAGCAAGCCAGGGGCCAGAGCAGTTATTATTTGCACACGGACAGTCACCCCCGGGCAGGGATAGCAGGGGTGTCATCATCTACGAGCGCAGCTCAGAGGCGTTGGTCAGCGCCCGGCTTCCAAAGATACGGGATAAAGAGTGAGGAGGCGGCCAACccttcctcctccagctcctcacGACCTTCCTTCATCCCCCAGGAGGTCAAGCTGTCCATCGAAGGGCGCTCTAATGCGGGGAAgtag

Function

GO: NA

KEGG:

id description
K23616 ATXN1_1L; ataxin 1/1L

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU79791 lncRNA upstream 84197 22973878 ~ 22974091 (+) True G63772
TU79568 lncRNA upstream 667047 22383517 ~ 22391241 (+) True G63592
TU79532 lncRNA upstream 675797 22352173 ~ 22382491 (+) True G63564
TU79565 lncRNA upstream 703309 22354018 ~ 22354979 (+) True G63589
TU79529 lncRNA upstream 850257 22207708 ~ 22208031 (+) True G63562
TU79804 lncRNA downstream 6162 23068311 ~ 23070149 (+) True G63784
TU79809 lncRNA downstream 14752 23076901 ~ 23077313 (+) True G63787
TU79811 lncRNA downstream 24229 23086378 ~ 23086933 (+) True G63789
TU79937 lncRNA downstream 788201 23850350 ~ 23897755 (+) True G63890
TU79949 lncRNA downstream 836358 23898507 ~ 23899754 (+) True G63898
AMCG00020508 mRNA upstream 5601 23045179 ~ 23052687 (+) True AMCG00020508
AMCG00020506 mRNA upstream 56442 22994296 ~ 23001846 (+) True AMCG00020506
AMCG00020507 mRNA upstream 96557 22953442 ~ 22961731 (+) True AMCG00020507
AMCG00020500 mRNA upstream 141455 22909385 ~ 22916833 (+) True AMCG00020500
AMCG00020499 mRNA upstream 149559 22901112 ~ 22908729 (+) True AMCG00020499
AMCG00020514 mRNA downstream 29105 23091254 ~ 23113539 (+) True AMCG00020514
AMCG00020512 mRNA downstream 57975 23120124 ~ 23161895 (+) True AMCG00020512
AMCG00020513 mRNA downstream 109651 23171800 ~ 23205292 (+) True AMCG00020513
AMCG00020515 mRNA downstream 152240 23214389 ~ 23232308 (+) True AMCG00020515
AMCG00020518 mRNA downstream 512957 23575106 ~ 23582740 (+) True AMCG00020518
TU79558 other upstream 685528 22358828 ~ 22372760 (+) False AMCG00020487
TU79495 other upstream 916131 22135368 ~ 22142157 (+) True AMCG00020470
TU79182 other upstream 3422067 19631325 ~ 19636221 (+) True AMCG00020438
TU79166 other upstream 3457551 19597238 ~ 19600737 (+) False AMCG00020439
TU78921 other upstream 4724256 18332569 ~ 18334032 (+) True G63045
TU79808 other downstream 8262 23070411 ~ 23074945 (+) True G63786
TU79994 other downstream 989840 24051989 ~ 24053877 (+) False G63939
TU79996 other downstream 989840 24051989 ~ 24055592 (+) True G63939
TU80130 other downstream 1416686 24478835 ~ 24482114 (+) True G64046
TU80333 other downstream 2011908 25074057 ~ 25076690 (+) True AMCG00020572

Expression Profile