RNA id: AMCG00020506


Basic Information

Item Value
RNA id AMCG00020506
length 4523
RNA type mRNA
GC content 0.39
exon number 5
gene id AMCG00020506
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 22994296 ~ 23001846 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTGAAAATGTCTGGTCTCTGATTATATTATTTCCCAATCGTGGAATGTTCTGGCTGCCTGGAAGCACCTGCGTTCCCGGAGAACATTCTATTCTGGTAAACAAGCTGGCAGCGATAGAAAGTATTTTGCAATCCAGAGGAAATATAAATGGGATTCTTGTCTTAATGAGGGAAAGCTGTTACAAGAGGACAGGTTCGAATATACATCAATATGTGGTCTCCAGTAGCAGTGGTTCTTGTGGTGTCAGGACTCTGTCTTGCAGATGAGACCTTTACTATGGACAAGGAGAAAGCCTATAGAAGCCGACGTATGGTGGGAGGGCTTCTTACTGGCAAAATCCCTTGGCAGGTGTTAGTATCCCTGGGGGGCAGTCAGATTGGAGGTGGGGCACTGATTGGCGACCGCTgggtgctgactgctggcagGAATCTCTTCCACAATAAGAGTCACGAGGCAAGAACCGGGGACCCTCCCAGCATTCCTAAGGTGTACCTGGGCATCACGCACCTCCGTGAAATGGAAGAAAGCTTCAATGAGGCAGAAGTGGCTGAGGTGATCCTGCATCCCAGCTTCCAGAACACCTCCGACTGGGACAACGACCTGGCTCTGATCAAGCTGAAGCACAAATTAGCTTTTGAAGGAAACAAGTTGCCCCTTTATCTGCCCGAGAAGGAATACGCTGTGGAGGACACTTACGGAATAGTGGCAGGCTGGGGTTGGGGGGCTTTGCTTAAGAACTCTGAGTTGCTGAAGACCCTGACACTCAGGGTGGCAAACTTCACCATGTGTCAGCAGGAGTTCATCAATCAAAATTGGAATTCCTCTGACAAACAAAAGCTGAAGAGCATACCTGACGTGGACGAGAACATGTTCTGTACTGAGGCCACCAAATACGAAGAGAACGTGTGCTTTGGAGATGCAGGGGCAGGCTTTGTAGTACAGGATCCCGAAAATGGCAAAAAATACCTGGCTGGAATCCTCTCTTTCGACAAGAGCTGCAGGGTGGATAAGTACGCTGTCTACATGAAACTAACAGCATACCTACCCTGGATAATGAGCACCATTGGGCCTCAGTGAGACACCCCACAAAAGCTGAGCACAAGCCATCACCAGCGCCAACGCTTTGCCTCATGTCTCCAAGTGCCTTCGTAATCCCTGCTCAAGAAACACTTCACTGTGAAGTCTGTGCCATTAAAATTCATCTCAGCCTTGCTTCTCTCTGATCTTTCCACATTAATATTCACCATTTGCATGTCTTGTTTCTTAACTTctaatttgcattagtttttaaatattgaggATAGCCAGGGTTTAATAAGGGTCACTAAATGCTGTAATCTATCTGAATTAAGTACTGGTTGTaactaaaagaacaaaaacaatataaaatgttgcTTCCCATGGTTTTTATTATAAGTCCTTACTGATTAAAAGGTGGTCTGGACAGTGTTCTATGTGGAATGCAAAAGCTTAGATAGGATAAGGCTCTCAGAATTTACAGTATACGCTTAAATTACCTAAACACATTAAAGCTTTTAAATCTGATATATatcagatttacattttttttttactgacacCACAGTATTCCATTTAGTTCTTCTCACTTCATTGAGATGTGACAATATCCAAACTGCCATACAtcttctttttaatacatttggtCTTTCAGCCATTCCcagaatattttatgttttaatttacagcaACTCAAATtagtatgtttgtttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgaccttaTTTGATCTCactgtgtgtatttacataggTAGATACACTAGGTCTACATGCCCTTGTTGGGAATAGTTAAGTCTCTCTGGTTTAATAGGAACAACAATAATATGGCTCCAGAATGTATTTTCATTCTGTGCACCTGTGccttaataataaaatcatcagCCATTCTTTCCAATTTGCTCATCTTTAATTCAATCtaatgcaattaacacatttcaaggctgacttgtatttttccattttcagtcAGAAATAATGAGAGTTTTAATACACATCCAGagtaaataaaagattaaaaatcaGCAGTAATTAACTCTCGgaatgaaggggaaaaaacaacaacaaaaaactaagtGTTGACCATAAAACATGAGGTAACACTTTCaggaagaaaacagaagaaagctGGACCGAGGATTTGGACACAGGGAAAGCAGTCTTGAGATATTCAAAATACTAGACAACTTTCGAAAAAAGGGTGTTGAGGTCCGAGTAATCTGTCTTTCAAGGTTTAGCCtacatgttcatttaaaatatgtggcAACTAACATCAACAACATTACACAGATGAAACTGAAGGGAAATGCAGCTCACTGTGCTGTCACTCTAGAGACCATTAGAATCAGGTCTGTCAGAAGTTCAATGTACGCAAAACAAACTTCAAAGCATGTAGCTACAGAGTCATACATCTGCCTTTAAATAGAGTCCATTCTCTTTTCAATGTGGCTGATTAATGACCATATTCCCCATGACCATATCAAAATGTCTCCCCTTCTGCTTGTTTCTGACAGCGAGGGGGTTGCTTCTTCCCTCCCGAGACCAATCTTGGATTTCCTCAGATCTTTCTGGGTTGAGACAGCATAGCACTCCGCTCACCCATTTCTCGCTCGGATATAATTTCCCAATCcaatgaagcagaaaaacaccatcCCACACTCCGCTCTCTGAAGTATCAGCTAAAGACTTTTAATTGGTTTCTACATGCAGCTATGtctgttattgtgttgtgtatCACTGAACTTGAAGACCAAGTATAAAAGGTTTTCTTGTTGGACAAAGTGAATAGAAGTACTAATTTCCACTTTACAAAGGCAGGGAGCCTTGTGTTTAATTCAGTGTCGCATGGTCAGTATGCTTTATTGTTACACTGCTTTCACTTATTTCAGATTTGCTGAATGCCAAATAATTACCCAAAGTTGCATTGATATTTCCTGACATTTATTAGCAAACTGAATTGAGAATAGTACTCCACAGGAAGTCTTAAACCAAAGTAATATTAGACTTCCCGTGCTATGCTATGTAACAGGATTGACTAGGAAATCCTAGTGATGTTGTTAGGTTCTTCATAAAGTCAACCCAGTGTGTTGCACtccgcattaaaaaaaaaaaaaaaaaaatacaacatactgACATACAGACTGATAATAGTGTGAAGAAATGTagtgttgttaaaacatttagTCTGTTCTCCTATTCCCTTTACGTCAGTACCATGAAAGAAGCTCTATAATCATTCAGGCCCGAGGAGTCCCGGAGTAGAAAATCAATCAGTACCTACTCCTAAAATAATCGATTTTTAGTTTCAAGCCAGAAATGTACACGGTGGATAAAAATAAGCCCATAGAGTACTGTTACTACACCACACTAATGATCAAGGTTACTTGGTCATTACAAACATGTTTCCCAAGGATAAATCTGCATCAATTCACATGtgaattctttaaagaaataaGATTGTATAAAAACTTGAGctttaatgcaacacaaaatagAGTACTGTACCCTCCTTAAAATAATGAGCCACACGATTCAAGAGAAGACAAACTAGACATTCAATTTGCAGCGCAGAAAGGATACACTCTTTACCGTTCTGAGTGTAAAGTGTGTGCAACACTACGCATTTGATTCAGAAAAAAGTCGCAAACAAAATATAAGGTATATAACAGCTACGAACCCATAAATCATTTAGAAACCAATCGCACTATTTTATGGCAACATATTAATATAGGAATGTGGTTATTGCACTTGCATTGCCATGAAAGTCATCTCGTCCTTCCTTCATGGAAATGCAAAAACGTCACTactgttttatgtttctttatttttctgtggaaACTTTACCGCTCAAAAAAACGCAAGGCATCAAGGGAAAAGATGGAAGGGCTAACAGGTGCATGTCTTCGAAGTACTAAGTAGTAGCCCGcaatcctttttatttaaaggttttACTTAACATCAATTGCCATTTCTATTTTCACATcgaatgatttttttttgttatttcaattACAGTGTTATGTAATCTATAAAACAACCAATGTTTTCCCtgatttgtaaattatttaataagtgTAATTGTATAACTAAGCTGTTATAGATGGTTGATTTGAACATCTCTTTAGGACCTGTCTGCAACAGTTTTTCAGGACAATGTCTAGAACATATAATTTGGTTATTACACAGTTCACCCAATCCGCAATTTTTCACTGTCAGAAGATGTAAAGGCGAGTCTGACTGAATCTGAGCATGTTGTTCAGTATTAATATTGTCAGATGCAAGTTCAGATAAATGGTTAAAGGATTTGTGCATCACTTTGAAGTGGTAGTTTACGTAAGCTCTGTAAACACGGATTGGGGAGGGAGGTCACCTAATTACAATGAAAGACActacatcacatttttaattgagcACAAACAGAAGGGACAGATCTAAGATAAGGTCTTGAGTTTCAAACCCAGAGCGA

Function

GO: NA

KEGG:

id description
K16142 HP; haptoglobin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU79791 lncRNA upstream 20205 22973878 ~ 22974091 (+) True G63772
TU79568 lncRNA upstream 603055 22383517 ~ 22391241 (+) True G63592
TU79532 lncRNA upstream 611805 22352173 ~ 22382491 (+) True G63564
TU79565 lncRNA upstream 639317 22354018 ~ 22354979 (+) True G63589
TU79529 lncRNA upstream 786265 22207708 ~ 22208031 (+) True G63562
TU79803 lncRNA downstream 51952 23053798 ~ 23058400 (+) False AMCG00020505
TU79804 lncRNA downstream 66465 23068311 ~ 23070149 (+) True G63784
TU79809 lncRNA downstream 75055 23076901 ~ 23077313 (+) True G63787
TU79811 lncRNA downstream 84532 23086378 ~ 23086933 (+) True G63789
TU79937 lncRNA downstream 848504 23850350 ~ 23897755 (+) True G63890
AMCG00020507 mRNA upstream 32565 22953442 ~ 22961731 (+) True AMCG00020507
AMCG00020500 mRNA upstream 77463 22909385 ~ 22916833 (+) True AMCG00020500
AMCG00020499 mRNA upstream 85567 22901112 ~ 22908729 (+) True AMCG00020499
AMCG00020497 mRNA upstream 217811 22759678 ~ 22776485 (+) True AMCG00020497
AMCG00020496 mRNA upstream 267060 22713509 ~ 22727236 (+) True AMCG00020496
AMCG00020508 mRNA downstream 43333 23045179 ~ 23052687 (+) True AMCG00020508
AMCG00020505 mRNA downstream 56442 23058288 ~ 23062149 (+) True AMCG00020505
AMCG00020514 mRNA downstream 89408 23091254 ~ 23113539 (+) True AMCG00020514
AMCG00020512 mRNA downstream 118278 23120124 ~ 23161895 (+) True AMCG00020512
AMCG00020513 mRNA downstream 169954 23171800 ~ 23205292 (+) True AMCG00020513
TU79558 other upstream 621536 22358828 ~ 22372760 (+) False AMCG00020487
TU79495 other upstream 852139 22135368 ~ 22142157 (+) True AMCG00020470
TU79182 other upstream 3358075 19631325 ~ 19636221 (+) True AMCG00020438
TU79166 other upstream 3393559 19597238 ~ 19600737 (+) False AMCG00020439
TU78921 other upstream 4660264 18332569 ~ 18334032 (+) True G63045
TU79808 other downstream 68565 23070411 ~ 23074945 (+) True G63786
TU79994 other downstream 1050143 24051989 ~ 24053877 (+) False G63939
TU79996 other downstream 1050143 24051989 ~ 24055592 (+) True G63939
TU80130 other downstream 1476989 24478835 ~ 24482114 (+) True G64046
TU80333 other downstream 2072211 25074057 ~ 25076690 (+) True AMCG00020572

Expression Profile