RNA id: TU79791


Basic Information

Item Value
RNA id TU79791
length 214
lncRNA type inter_gene
GC content 0.32
exon number 1
gene id G63772
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 22973878 ~ 22974091 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTGGCAATTTAAAGTGTCTGAAAGGTCAGTCACAGCAATATTCACTGAGAAAAGCACATACCCAATTCAATCAACTTTGGAAGAGCAGCATTTAGAGAAAATATTTGTGGAATAAAGTTTTTCCAAATCAACCTGTCAGTTacgttaaaatgtatattgtttttcattataatcAGAGATTAGTCAATAATTTCtcaattatctctctctctct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU79568 lncRNA upstream 582637 22383517 ~ 22391241 (+) True G63592
TU79532 lncRNA upstream 591387 22352173 ~ 22382491 (+) True G63564
TU79565 lncRNA upstream 618899 22354018 ~ 22354979 (+) True G63589
TU79529 lncRNA upstream 765847 22207708 ~ 22208031 (+) True G63562
TU79426 lncRNA upstream 1334222 21638996 ~ 21639656 (+) True G63477
TU79803 lncRNA downstream 79707 23053798 ~ 23058400 (+) False AMCG00020505
TU79804 lncRNA downstream 94220 23068311 ~ 23070149 (+) True G63784
TU79809 lncRNA downstream 102810 23076901 ~ 23077313 (+) True G63787
TU79811 lncRNA downstream 112287 23086378 ~ 23086933 (+) True G63789
TU79937 lncRNA downstream 876259 23850350 ~ 23897755 (+) True G63890
AMCG00020507 mRNA upstream 12147 22953442 ~ 22961731 (+) True AMCG00020507
AMCG00020500 mRNA upstream 57045 22909385 ~ 22916833 (+) True AMCG00020500
AMCG00020499 mRNA upstream 65149 22901112 ~ 22908729 (+) True AMCG00020499
AMCG00020497 mRNA upstream 197393 22759678 ~ 22776485 (+) True AMCG00020497
AMCG00020496 mRNA upstream 246642 22713509 ~ 22727236 (+) True AMCG00020496
AMCG00020506 mRNA downstream 20205 22994296 ~ 23001846 (+) True AMCG00020506
AMCG00020508 mRNA downstream 71088 23045179 ~ 23052687 (+) True AMCG00020508
AMCG00020505 mRNA downstream 84197 23058288 ~ 23062149 (+) True AMCG00020505
AMCG00020514 mRNA downstream 117163 23091254 ~ 23113539 (+) True AMCG00020514
AMCG00020512 mRNA downstream 146033 23120124 ~ 23161895 (+) True AMCG00020512
TU79558 other upstream 601118 22358828 ~ 22372760 (+) False AMCG00020487
TU79495 other upstream 831721 22135368 ~ 22142157 (+) True AMCG00020470
TU79182 other upstream 3337657 19631325 ~ 19636221 (+) True AMCG00020438
TU79166 other upstream 3373141 19597238 ~ 19600737 (+) False AMCG00020439
TU78921 other upstream 4639846 18332569 ~ 18334032 (+) True G63045
TU79808 other downstream 96320 23070411 ~ 23074945 (+) True G63786
TU79994 other downstream 1077898 24051989 ~ 24053877 (+) False G63939
TU79996 other downstream 1077898 24051989 ~ 24055592 (+) True G63939
TU80130 other downstream 1504744 24478835 ~ 24482114 (+) True G64046
TU80333 other downstream 2099966 25074057 ~ 25076690 (+) True AMCG00020572

Expression Profile