AMCG00020496 (acsf3)


Basic Information

Item Value
gene id AMCG00020496
gene name acsf3
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 22713509 ~ 22727236 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00020496
ATGTTTTTAGGGGCAGCTTTTCAAACTGTGCCCAGGACTTCCCTCAGACTGGCACTGGGACACAGTGACCAAGGGAAGATCTTCATGCGATTCCTGCTGGGCGATGGACTGAGGAGGTCACACCTGCACACAGTGAGGAAGGCATGGAGGAGCAAGGTGACACCTCTGTTCACTAGAGCCCTGGCTTTCAGGGAGAAGCTGGCAATCGTGGATGTGAACGGGACATACACCTACCAGGATCTGTACAGGAGCAGCTTGGGTCTGTCCAGGCAGATCGTAGAAGCACTGGAATGCAGCTCTGGGGACCTCCAGGGGAAACGCATCTCCTTCCTGTGCCCGAACGATGCCTCGTATGTGGTGGCGCAGTGGGCGTCCTGGATGTGTGGTGGCATTGCTGTGCCTCTCTATTGGAAGCACCCGACGTCCCAGCTGGAGTACATCATCACAGACTCACAGAGCTCCCTGCTGCTCGAAGCACAGCCCTACTCAGGGACATTGGGCCCCCTGGCAGAGAAACTGGGGCTCCCCTACCTGACACTCCCTGTCTCCtccagccttggctctctgcatTCTGCACAGGGCGAGCCCAGCCCGACCATCTCAGACTGGGCAGAGAGGCCGGCCTCGATTATCTACACCAGCGGTACCACTGGCCAGCCCAAAGGGGTTCTGAACACTCACCGCAACCTGCAGGCAATGATGCAGTGCCTGGTGTCAGAGTGGGGGTGGGCGGCCGATGATGTCATCCTCCATACCTTGCCCTTGCACCATGTTCACGGCATCGTCAACAAACTGATGTGCCCGCTGTGGGTGGGCGCCACCTGCATCATGCTGCCTGAGTTCCAGCCACAGACGGTGTGGGACTTCCTCTTGAGCTCCAAGGCTCCCCGTGTCAATGTGTTCATGGCTGTGCCCACCATCTACTCCAAGCTGATCGAGCACTACGACCGCCACTTCACCCAGTCCCACGTGCAGGATTTTGTGAGAGCGGTCTGTAAGGAGAGAATCAGGCTCATGGTGTCAGGGTCAGCAGCCCTGCCCCTGCCCACATTGCAGCGATGGGAGCAGATCACAGGGCACACTCTGCTGGAGAGGTACGGCATGACAGAGATTGGCATGGCGCTGTCCAACCCACTGAAGGGGCCTCGCATACCAGGCTCTGTGGGTGTCCCTCTGCCTGGAGTTGAAGTCCGCATCATCATGGACAGCAAGTGTAATGCCACCATTGCAGAGGGCAACTGCAGGGAGACGCAGGTGAAGCCCGGCCTGGAAGGGAAGGAGGGGGAGCTGGTGGTTCGGGGTCCTTCTGTCTTCAGGGAGTACTGGAACAGGCCAAAGGAAACCAATGAGTCCTTCACTGCTGATGGCTGGTTCAAAACAGaaAGTCTTTGA

Function

symbol description
acsf3 Human ortholog(s) of this gene implicated in combined malonic and methylmalonic acidemia. Orthologous to human ACSF3 (acyl-CoA synthetase family member 3).

NR:

description
PREDICTED: acyl-CoA synthetase family member 3, mitochondrial isoform X2

GO: NA

KEGG:

id description
K18660 ACSF3; malonyl-CoA/methylmalonyl-CoA synthetase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00020496 True 1392 mRNA 0.58 7 22713509 22727236

Neighbor

gene id symbol gene type direction distance location
AMCG00020491 trappc2l,LOC107600366,LOC107730159 coding upstream 131050 22580097 ~ 22582459 (+)
AMCG00020490 NA coding upstream 159295 22543800 ~ 22554214 (+)
AMCG00020485 NA coding upstream 239577 22467523 ~ 22473932 (+)
AMCG00020486 snai3,LOC106587174,LOC107667233,LOC107599746 coding upstream 281699 22430536 ~ 22431810 (+)
AMCG00020484 NA coding upstream 287627 22410182 ~ 22425882 (+)
AMCG00020497 NA coding downstream 32442 22759678 ~ 22776485 (+)
AMCG00020499 spg7 coding downstream 173876 22901112 ~ 22908729 (+)
AMCG00020500 ist1 coding downstream 182149 22909385 ~ 22916833 (+)
AMCG00020507 NA coding downstream 226206 22953442 ~ 22961731 (+)
AMCG00020506 NA coding downstream 267060 22994296 ~ 23001846 (+)
G63592 NA non-coding upstream 322268 22383517 ~ 22391241 (+)
G63564 NA non-coding upstream 331018 22352173 ~ 22382491 (+)
G63589 fam96b,LOC106562058 non-coding upstream 358530 22354018 ~ 22354979 (+)
G63562 NA non-coding upstream 505478 22207708 ~ 22208031 (+)
G63477 NA non-coding upstream 1073853 21638996 ~ 21639656 (+)
G63772 NA non-coding downstream 246642 22973878 ~ 22974091 (+)
G63784 NA non-coding downstream 341075 23068311 ~ 23070149 (+)
G63787 NA non-coding downstream 349665 23076901 ~ 23077313 (+)
G63789 NA non-coding downstream 359142 23086378 ~ 23086933 (+)
G63890 NA non-coding downstream 1123114 23850350 ~ 23897755 (+)
AMCG00020487 NA other upstream 304016 22356174 ~ 22409493 (+)
AMCG00020470 NA other upstream 571311 22135368 ~ 22142198 (+)
AMCG00020438 NA other upstream 3077288 19631325 ~ 19636221 (+)
AMCG00020439 LOC107696663,LOC107556242,LOC107746488,LOC107726063 other upstream 3111185 19597203 ~ 19602324 (+)
G63045 NA other upstream 4379477 18332569 ~ 18334032 (+)
AMCG00020505 NA other downstream 326562 23053798 ~ 23062149 (+)
G63786 znf821,LOC107747380 other downstream 343175 23070411 ~ 23074945 (+)
AMCG00020529 LOC107090538 other downstream 1305801 24033037 ~ 24068457 (+)
G63939 NA other downstream 1324753 24051989 ~ 24055592 (+)
G64046 NA other downstream 1751599 24478835 ~ 24482114 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_034108 ACSF3 coding NC_007118.7 CM002891.2 55950229 ~ 56038023 (+)