AMCG00020490


Basic Information

Item Value
gene id AMCG00020490
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 22543800 ~ 22554214 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00020490
ATATTTTCGTGCAGCAGCTTCCGGTTAGGAGAAAATAACAAGCAGGAAGAGAGGAGTGGGGGAAGCGATCGGCTGCAGCGGGGGAGAGAAACGGCACCGCGCTATTGCACACACTTTCTGTGGGCAGACGTGAATTGTGAAAGAACGACTGAGAAGGAAGAGAGGAGGGCAGCAGATAGTACCTGTTTGGGAAGCtgtgtaaaaaagtaaaactgcGGTCCAGAGGTCGCTGATGCTTGGGGAATGTCTGCATAATCCATTTTTTCATACGTGTGcaattaagtgttttatttaggGGAAGTACATTCGATTTGAAAGAAATCAACCATAATGTCTCAGCTTCGAGTTACCGATTACTTTGCGCAGAGTAAGAAAGCAGGGGGCGAGGGGGCGCTGAGGACCAAGCGAGGAGTCCATCCGCTGGAGGAAGAGAGCGCGGCGCTGCGAGGCACGCGAGACAGTGTTCGATGCACACGTTCTAGAATTAAGAACCGGGACGCCGCGGGAGCGGGAGCGGGGGGGGCAGAGCGTGCCGTGCACTCGCCCCCGAAAGCCAGAGCCACGCGATCCCGGGCAGGTGCCGAGGAGCAATCGAAGGACGCCGGAGAAGCGAAGCAGGACCCCTCGGATGACATTGCCGTCCCTGCTGAGCTGGCACCCCCGAGTCCGGAGCAGAGCGCCGCCGCCCGGCCCCCGCGCACCCCGAAGCGCAGCTCCCGCCCCGCGGAGCTCGACCTCAGTTTAGACGTGTTCTGCACCAAGACCGGCCACAGCACGGCCAAGAAACGGGCTCGGCTCGATCAGGCGGCCAGCCGGGGCTCTGCCACTGAAACTGTTAAGAAATCGGCCAGGAAGAAGCTAGTCCTGCACAAAGATGAGGAAACACGAGGAAAGGTGTCCAGCCCTGTATCTAAGGCAATCCTCCAGCCATCCAGTCCGCTGTCCGTCGAGAAGAAGGTGAAGAACTTGGCGAACTGCAGTGCCACCTCCTCCCCAGTGAGCAGCCAGGATGGCAGCAGCACCAACCTACAGGCACCTGACGAGCGCAAGGAAGGCATTGCGTCTCTCAAGTCACGTCTGCAGAAGATTCAGGAGCAGAGCCAGCAGGTCTCCCTGGCCCCCTCTGCCTCACGCCAAGTCCAAGCAGACCTAAAGGCCAGGCTGGACCGAGCCCGGGAGCTGGCAGCCAAGGCCCAGCGCAGGAAGGAGGACAAGGCTGCAGAGGCTGAGAGAGTGGAGAAGCCCAAGGAAAGtGAGGAAGTGCCGGCTTACCAGCGATACCACACTCTTGCCCAGGACGTACCACCAGGCCTGACCTTGCCctacaagttcaaggtgttggcGCAGATGTTTCATAGCATGGACACTATTGTTAGCATGCTCTTCAACCGCTTGGAGACTGTCACCTTCGCCAAGGTCAAGCAGGGTGTCCAAGACATGATGCGCAAGCAGTTTGAGGAGAGCCATGTTGGCCAGATCAAGGCCGTCTACCCCATGGCCTACAAGTTCCGCCAGGAGAAGAACATCCCCACCTTCAGTAACACGGTGAAGAAGTCCAGCTACCAGCTGACTGTGGAGCCAGTCATTGACATAGAGAAGAGTGATGCTCGCCCACAGCTGTCTGCTTCACACCTGCTGGAGCGAAGACGCACCTTCACCCGGAACCTGGTGAACATTGTGAAGGAGCACCACAAGgTGTTCCTTGCTTCAATGACTCCTCCTCTCAGTGTCCCAGATGACAAGCTTACCCGCTGGCACCCCCGCTTTAATGTGGATGAGGTTCACAGTATTCTGCCTGCTGACCTGCCACAGCCCCCCCAGGTGGACAGATTGACCACTGCCCAGGAAGTGCTGGACAAAGCCCGCAGCCTGATGACACCCAAGATGGAGAAAGCCTTGGCTAATATGGCTTTGAAGACGGCGGAGAGCACAAGCAGTACAGCTGGACAGAAATCCCCTGCGAAGGCGATGCCTCTCCCCCCTGCCACCCCCAGCGCTCTCAAAGGCGTGTCCCAGTCGCTGCTGGAGAGGATACGAGCGAAGGAGGCTCAGAAGATCCAGGCCATGATGACGCGCAACCCTCAGCAGGAGGAGCGATTGCTGATGATGTCACGGCTGGGGGAACTGGCGAGGATCCTGCGTAATGTCTTTGTGGCCGAGAAGAAACCAGCGCTTATTATGGAGGTGGCCTGCAGCCGTGTCATTGCCAGCTATCGTACCGTATTGACATCAGCCGAGATGGAGAAGCATCTGAGACTCCTGTCAGAGCTGACTCCGGATTGGCTGACAATTCTCCCAATCAGAAAAGACTTCTACCTGAAGCTAAACAAGACCATGGACCTTAATATGGTGGTGGAGAAACTCAATCAGAAGACCAGAGTAGAGGAGAGACTCTGAATCTCTGGAAATCAAAACtgtttacaaaagtgcaattttaaaatgtttaattgttccAATTTAAACACCCAAGAagttttctggttttcattccactaGAATTAGCTTAATCTCTTACTGATTGAAATGATGGCTTTTTAGTTAGCAGCAGGGATTAGTGAAGGATATTTTGTCTAGTGTCATATTTGTCTGTTGTGTGGAATATGAAACTTAGTTTAAATTTAttgagggtgtttttttttttaagcagtatgtaatttgttttttattaacaatGAAACGGATACTCTACATTGTTTCATTTACAACACTACCTTgatgaatgttttaatgtttttaattcaacatCCTGGGTACAATTGTTTAGGTATGAAAGTGTTGTGTATCTTGAGATTCATTTTCACTTCCTACATAAGGACAAGAAAACTTCTCAACTTTTCTGTGGGGAATAAAAAGCATAACCTTCATTAATCTAGTGGTCATTGTGGAGAATAGATTAGTTATATTCCTTAAATGGTGCAATCTCCACTGAAGGATCCTGCATCATATTAAGATGAAAAATGTGTGAAGGATTGGAAGTATTTTTAAGATGGGGTTAGTTTTCTCCCTGCAAAAGACCAGGCTGTTGAACATGTAAGTAGTATGCTGCttacaaaaactatttaaattgtatatttacatGGGTTTGTCAAAAGAGGGAGAAATAAGTAATCGATAACTGGACAAAACAATTTAtagtattatactttgaatatACCAACTGCTGTTCAGTAGGGACATGAGTGTTGCCACTTCTGCTAGAGGTGGGTTGGTAGCAGTTTTATCAGTGCCCTTCTAGATTTAGTACACCGGATTCACAAAACTGCATATTCCAAAGATAGAGAAACCTGTAGTACCTGCTCATTATTCTACTTGTCAAGAATTtgtgaatgtgattttttttttttactttattgcttttaaataaatgtacacaaatatcATTTGGACTaacatacatttactttttttaagacTTCAATAGTccaaaaacaagttttaagaGTAGTGGACACTGAACAAAATTACCCAGATTacaattttcatttattaaaaaataaaaaattaaccCTACAACTGAGTACTTCCTCCAGCCAGGACTTTATCATTGCACTGGTTAAATAATGGATTAAATCCAAGAGTTGAGGGaaaggcacttttttttttttttttttttttcccttttatt

Function

GO: NA

KEGG:

id description
K10727 CDT1; chromatin licensing and DNA replication factor 1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00020490 True 3625 mRNA 0.48 10 22543800 22554214

Neighbor

gene id symbol gene type direction distance location
AMCG00020485 NA coding upstream 69868 22467523 ~ 22473932 (+)
AMCG00020486 snai3,LOC106587174,LOC107667233,LOC107599746 coding upstream 111990 22430536 ~ 22431810 (+)
AMCG00020484 NA coding upstream 117918 22410182 ~ 22425882 (+)
AMCG00020480 NA coding upstream 193394 22346354 ~ 22350406 (+)
AMCG00020481 NA coding upstream 197471 22334724 ~ 22346329 (+)
AMCG00020491 trappc2l,LOC107600366,LOC107730159 coding downstream 25883 22580097 ~ 22582459 (+)
AMCG00020496 acsf3 coding downstream 159295 22713509 ~ 22727236 (+)
AMCG00020497 NA coding downstream 205464 22759678 ~ 22776485 (+)
AMCG00020499 spg7 coding downstream 346898 22901112 ~ 22908729 (+)
AMCG00020500 ist1 coding downstream 355171 22909385 ~ 22916833 (+)
G63592 NA non-coding upstream 152559 22383517 ~ 22391241 (+)
G63564 NA non-coding upstream 161309 22352173 ~ 22382491 (+)
G63589 fam96b,LOC106562058 non-coding upstream 188821 22354018 ~ 22354979 (+)
G63562 NA non-coding upstream 335769 22207708 ~ 22208031 (+)
G63477 NA non-coding upstream 904144 21638996 ~ 21639656 (+)
G63772 NA non-coding downstream 419664 22973878 ~ 22974091 (+)
G63784 NA non-coding downstream 514097 23068311 ~ 23070149 (+)
G63787 NA non-coding downstream 522687 23076901 ~ 23077313 (+)
G63789 NA non-coding downstream 532164 23086378 ~ 23086933 (+)
G63890 NA non-coding downstream 1296136 23850350 ~ 23897755 (+)
AMCG00020487 NA other upstream 134307 22356174 ~ 22409493 (+)
AMCG00020470 NA other upstream 401602 22135368 ~ 22142198 (+)
AMCG00020438 NA other upstream 2907579 19631325 ~ 19636221 (+)
AMCG00020439 LOC107696663,LOC107556242,LOC107746488,LOC107726063 other upstream 2941476 19597203 ~ 19602324 (+)
G63045 NA other upstream 4209768 18332569 ~ 18334032 (+)
AMCG00020505 NA other downstream 499584 23053798 ~ 23062149 (+)
G63786 znf821,LOC107747380 other downstream 516197 23070411 ~ 23074945 (+)
AMCG00020529 LOC107090538 other downstream 1478823 24033037 ~ 24068457 (+)
G63939 NA other downstream 1497775 24051989 ~ 24055592 (+)
G64046 NA other downstream 1924621 24478835 ~ 24482114 (+)

Expression


Co-expression Network