AMCG00020485


Basic Information

Item Value
gene id AMCG00020485
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 22467523 ~ 22473932 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00020485
aTGTGTCAAGTGGACGAGGAATATAAAGATGATCAATTGAAAAACAGAACCGTTCTAAGGGATTGCTTTAAAGAGTACTTTGTGCATAAATTCCGGGCCATGCTGGGGAAAAACCGTCTTATTTTTCCTGGAGAGAAGGTTCTCCTGGCTTTGTCAGGTGGTCCTGCCTCCAGCTCCATGCTCTTCCAGGTTCAACAGggTCTGAGTCGTGATGCACCAAAGAAATTAAGATTTACACCTGGAATAGTCTACATAGAtgaagGAGCTGCTACAGGTCAGAGCCCAGAAGAGAGAATTGGAAAGATATCCCAGCTGGAGTCCATATTCTCAGCCACAGGGTACCCTTTCTACATTGTACACCTGGAGGAGGTGTTTGGTCTGCCCAATTCTGTCCTGCAGTGTGTGCCCTCTGTCCCGGAGAGGATAGAGGGGTGTTATAAGGCTGCTGTGGAGAGGTTCATCCAGCACAGTACAAGCACACAAAGGGAGATGAGATGTATTTCTGAGGCCGAGGATCCTTCACTGATGGGAGCCCAGACCAGACTCTCTGAGCTGTCAGTCCAGGATGGAAGAGTTTCCGGTGGGAGACTTCCTGTCACTCCTGAGCAGACCCAGGCTGTAGAGAGACTGCTGGCCTCTGTTAGGACTCTGACAGCAaaggaggagctgctgcagacaTTGAGGCACCACCTGATCGTGCACACGGCGAGGGCACACGGTTACGCCAAGGTCATGATGGGAGACAGCTGCTCTCGCCTGGCTGTGAAGCTCCTAAGCAACATCTCCCTAGGCCGAGGGGCGTCTCTGGCCATGGACACGGGTTTCTCAGATCCCCGATATGGAGACATAGCCATAGTCCGGCCCATGAGGGAGTACTCTTCTAAGGAGATTGCATtctacaataaaatgtttaaggTCCCATCTGTTTTCATTCCTGGCCTAGACACTAAGGCTCCCGAGAAAGCCAGCATTCAACGCCTGACTGAGAGCTTCGTCAATAAACTTCAAGCCGAGTTCCCCTCCACTGTCAGCACCATTTACAGGACTAGCGAGAAGCTGATCACGGCCTGCCCACGAACGAGTGCTGACAAGGAGCAGACTGAGAAGTGCTTGCTGTGTCTCTGTACTCTGGACACAAGTGGAGaagaGGCCTCTGCCTTCCACGCTACCTTGATCTCAGAGAAGCTCTCTCAGAAGAAGCCCCCTGAGCTGGGCCAAAGCCCCGTGTTGCCAGGTCAGCAGTGCTGTTGCACTGGAGGAGGGCAGGCTGACATCTGTGGGGCCACAGGCGGTGGCTGCTGCTCTGTGGACAGGACCCCCGTCACCCATGACCTTCAAAGCCTGCTGTGTTACAGCTGCAGACTGATCATCAAAGACATGATGAAAGAGGAGATCAGCGAGTTCCTTCTGGACCCTGACGAGGATTGTGATGCTGCCTGA

Function

GO:

id name namespace
GO:0034227 tRNA thio-modification biological_process
GO:0002098 tRNA wobble uridine modification biological_process
GO:0005829 cytosol cellular_component
GO:0000049 tRNA binding molecular_function

KEGG:

id description
K14169 CTU2, NCS2; cytoplasmic tRNA 2-thiolation protein 2

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00020485 True 1440 mRNA 0.53 13 22467523 22473932

Neighbor

gene id symbol gene type direction distance location
AMCG00020486 snai3,LOC106587174,LOC107667233,LOC107599746 coding upstream 35713 22430536 ~ 22431810 (+)
AMCG00020484 NA coding upstream 41641 22410182 ~ 22425882 (+)
AMCG00020480 NA coding upstream 117117 22346354 ~ 22350406 (+)
AMCG00020481 NA coding upstream 121194 22334724 ~ 22346329 (+)
AMCG00020479 NA coding upstream 215272 22250662 ~ 22252251 (+)
AMCG00020490 NA coding downstream 69868 22543800 ~ 22554214 (+)
AMCG00020491 trappc2l,LOC107600366,LOC107730159 coding downstream 106165 22580097 ~ 22582459 (+)
AMCG00020496 acsf3 coding downstream 239577 22713509 ~ 22727236 (+)
AMCG00020497 NA coding downstream 285746 22759678 ~ 22776485 (+)
AMCG00020499 spg7 coding downstream 427180 22901112 ~ 22908729 (+)
G63592 NA non-coding upstream 76282 22383517 ~ 22391241 (+)
G63564 NA non-coding upstream 85032 22352173 ~ 22382491 (+)
G63589 fam96b,LOC106562058 non-coding upstream 112544 22354018 ~ 22354979 (+)
G63562 NA non-coding upstream 259492 22207708 ~ 22208031 (+)
G63477 NA non-coding upstream 827867 21638996 ~ 21639656 (+)
G63772 NA non-coding downstream 499946 22973878 ~ 22974091 (+)
G63784 NA non-coding downstream 594379 23068311 ~ 23070149 (+)
G63787 NA non-coding downstream 602969 23076901 ~ 23077313 (+)
G63789 NA non-coding downstream 612446 23086378 ~ 23086933 (+)
G63890 NA non-coding downstream 1376418 23850350 ~ 23897755 (+)
AMCG00020487 NA other upstream 58030 22356174 ~ 22409493 (+)
AMCG00020470 NA other upstream 325325 22135368 ~ 22142198 (+)
AMCG00020438 NA other upstream 2831302 19631325 ~ 19636221 (+)
AMCG00020439 LOC107696663,LOC107556242,LOC107746488,LOC107726063 other upstream 2865199 19597203 ~ 19602324 (+)
G63045 NA other upstream 4133491 18332569 ~ 18334032 (+)
AMCG00020505 NA other downstream 579866 23053798 ~ 23062149 (+)
G63786 znf821,LOC107747380 other downstream 596479 23070411 ~ 23074945 (+)
AMCG00020529 LOC107090538 other downstream 1559105 24033037 ~ 24068457 (+)
G63939 NA other downstream 1578057 24051989 ~ 24055592 (+)
G64046 NA other downstream 2004903 24478835 ~ 24482114 (+)

Expression


Co-expression Network