AMCG00020522


Basic Information

Item Value
gene id AMCG00020522
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 23925180 ~ 23971574 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00020522
atgacCGGAGCGGCGGAACTGACGGACACCTGGGACACCTGGCAACCTGAGCCAAACACAGCCGCGGATGCTGGGAGCGCACTTCTGCGGCTGCGCGGTAGCAGAGCATCGCCTCATTCTCTGGGGGCAGTAGTGGCAGGGAGATACACCCTTCAGCAGAAAGTGGGGAGTGGGAGCTTTGCTACTGTTTACCTGGTGATCGACTCCAAATCCAAGGATAAAGAAGAAAAGAAAGTTCTGAAGCGGATTATAGTGGAGGAGCTAAGGGGAGATGACACAGTGCAGTCTGCTAAAGAAGCCCAGCTGCTCTCTAGACTGGACCACCCAGCCATTGTCCATTTCTACACCAGCTTTGTGGAGCTCCAGTCTTTCTGCATTATCACCGAGTATTGTGAGGGTGGGGATCTGGACAGCAGAATTAAGGGACGCTGGGACATGGGAAGACTTTTTCCTGAGGGGCAAGTGCTGGAGTGGCTAATCCAGATCCTTTTGGGAGTGCAGTATCTGCATGAAAGgcTCATTCTCCACAGGGACCTCAAAAcaaagaacatatttttaaagaatgggATGATTAAGATTGGTGATTTTGGTGTGTCTCGTATCCTTGCTAGCACACTGGATTGTGCCAGCACCTTCACTGGCACCCCCAACTATATGAGCCCTGATATCTTCACCGGCGCTGGCTACGATGCCAACTGGGTGAAGCTGGTTCATAAGATTGCTCTGGGTCCTTCTCCTACATTGCCTGCCAGCTTTTCCACTCAACTGGATGATGTCTTGCAGAGGATGCTGCAGAAAGACTCCGCTAACAGACCGAGTGCCACAGAAATCCTCAAAAGCCCCTTCATTGAAGAGAGCGTGAAAGGCCTGGTGTACACTCTGGGTGACTTGCTCCACAGAGAAGATGGTTACAGCATTTCTGCAGAATCAGCCCAGATTGCAGCTGCTCTtgAGCAGAAGGTGCACCTGGACAGTCTGCAAGCAGCTGCACAGGCACAAAGGCTGGACCCCCGAGGCAGGCGCAGATTGCGACAGACGAAGGATCCCAAGTTTGGAAAAGTGCATAAGGTCGTGAATCAGCTTTATCAGCAAAACAACCGGAAGGCTGTAAAATCAAGTGATCTGCCTGACATTCAGCAATTGGACAAAGATTCACAGGTCAGCCATGGAGGCACAGAAGAGGGGAAGTCTCAAGATGAGCCGCACATGGGTTGCTTGGAGTGCTCGGGTGAAGAAGGGAATTCAGAAGGAAGCGAGGATGAATTTAACACTGACTCTGAGGAGATGGCGGAAACTCTGATTGGCTCGATGTCGGCACTCTCTGAGGAACAGAGTTGCACCCTCCGTGCCTATCAGAACTGTCTGGTGAGATTTCTGGAGTCCAGTACGACAGATGATGAACAAGCCAATACCCTCTCACAAGCAAACCACAAAAAGCAAGACGAGATGGTAAACTCCTGCATTGACTCCAAAATCAAGGCCCTTGAACAGACCTGTGAACAGCAGCTAGGAGAGGAGGTGATCCAGCAGGTGTACTCCTACCTAAGCAGTGAGGAGGGACTGGCCTCGGAGACACAGCCTAGCTGGATTGAAGACCCCCAGCACTGCCTTACCATCCAGCAGCTTTTGTTCCTCAAACAGCAGCAGGCAGCGCACAGCCACACCAAACAAGCTTGGATATGAGCGCCATCACGCAACACCGTCCACTCCATGTCATGTCCGACACACATGCCTTATTTTATTCTcgtttattttcaatgttgtaCAAATCTTTTTACTGTCTttaacactagccagttgaatCGGGGTATAATCTCAAGCGCATTCACGGTTGACATTTCCAAGCCAGGACAAAGCGCTCACCTCGGGTTGAAACGTTAATGTGAGCAGCAGGGTTACACAGGCCTCAGgttgcaaacaaaaacaaatgtcaaggGTCACACGTCTgtgcatttctaaataaaaatggcaatatCGCTGTGGTGTGAGTATAAAGTCATATGAAAATATCCAGTTCAATCATGCAATGCGGGAAAAAACGATCCATTTTTATCAAGAGCTTGATGAAATACTTGTGATCGAGTTGGTAATAGACATGTGAAACAGTCGTGTCCAACCCTGGACCAAATCGTAACCTGTGTATTGTAGCACCAGGCCAATGTGAACGCGAGCAGGGTTGAGCTCAGTCACCCCAGCCACCCCGGCCACCCCGGGTCCACTCCACCCGGGTATAGTGTGAAAACGGCTCCAGTCTTTAACTCTGAACTAGGAAAGCTGATTTAATACCATTAGGTTGATGGAACCACATTTATTTTGGGATTTGACTCTAACCCACGTAGAAGCAGCCCACTTTTACAAAAGTGTGTTGAGAATGCAAGAGCATACAATCATTCTGGGTGTATATGAACACACTTTCAAATTACAGCATAGGAgagtagttgtttttttt

Function

GO: NA

KEGG:

id description
ko03460 Fanconi anemia pathway
ko04110 Cell cycle
ko04113 Meiosis - yeast
ko04114 Oocyte meiosis

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00020522 True 2449 mRNA 0.49 16 23925180 23971574

Neighbor

gene id symbol gene type direction distance location
AMCG00020520 NA coding upstream 67377 23813512 ~ 23857803 (+)
AMCG00020517 zfhx3 coding upstream 242878 23657711 ~ 23682302 (+)
AMCG00020519 zfhx3,LOC105888974,LOC106533552 coding upstream 314034 23608590 ~ 23611146 (+)
AMCG00020518 zfhx3 coding upstream 342440 23575106 ~ 23582740 (+)
AMCG00020515 NA coding upstream 692872 23214389 ~ 23232308 (+)
AMCG00020528 NA coding downstream 85520 24057094 ~ 24062675 (+)
AMCG00020530 psmd7,LOC107584693,LOC107659147,LOC107553010 coding downstream 188703 24160277 ~ 24163714 (+)
AMCG00020535 NA coding downstream 230740 24202314 ~ 24210374 (+)
AMCG00020536 NA coding downstream 244497 24216071 ~ 24225069 (+)
AMCG00020534 LOC104940465,LOC106520303,LOC103466051 coding downstream 254427 24226001 ~ 24232399 (+)
G63898 LOC108433019,LOC103398424 non-coding upstream 25426 23898507 ~ 23899754 (+)
G63890 NA non-coding upstream 27425 23850350 ~ 23897755 (+)
G63789 NA non-coding upstream 838247 23086378 ~ 23086933 (+)
G63787 NA non-coding upstream 847867 23076901 ~ 23077313 (+)
G63784 NA non-coding upstream 855031 23068311 ~ 23070149 (+)
G63947 NA non-coding downstream 99142 24070716 ~ 24072160 (+)
G63948 kars,LOC107738348,LOC107584690,LOC107679917 non-coding downstream 103475 24075049 ~ 24076475 (+)
G63951 NA non-coding downstream 116940 24088514 ~ 24093237 (+)
G64009 NA non-coding downstream 261165 24232739 ~ 24242677 (+)
G64048 NA non-coding downstream 517330 24488904 ~ 24565492 (+)
G63786 znf821,LOC107747380 other upstream 850235 23070411 ~ 23074945 (+)
AMCG00020505 NA other upstream 863031 23053798 ~ 23062149 (+)
AMCG00020487 NA other upstream 1515687 22356174 ~ 22409493 (+)
AMCG00020470 NA other upstream 1782982 22135368 ~ 22142198 (+)
AMCG00020438 NA other upstream 4288959 19631325 ~ 19636221 (+)
AMCG00020529 LOC107090538 other downstream 61463 24033037 ~ 24068457 (+)
G63939 NA other downstream 80415 24051989 ~ 24055592 (+)
G64046 NA other downstream 507261 24478835 ~ 24482114 (+)
AMCG00020572 NA other downstream 1090799 25062373 ~ 25076690 (+)
AMCG00020573 NA other downstream 1106568 25078142 ~ 25084873 (+)

Expression


Co-expression Network