G64048


Basic Information

Item Value
gene id G64048
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 24488904 ~ 24565492 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU80133
ttttatgcattttttaaattttattccaggaaaaaacaaaacaagtcaacagatcaaataattgtttttaacaaaagagcaatgaaaaacatcaataaGTAAAGTTTCTTCTTTCCATACATTTTTCCTCTCAAATGAGTTCAGAAAACATACACACGAGCTAAACAAGagagacaaattaaatgtgacCATACTAagatgaaacaaacaagaagaaatTGGTTCAGAATTGTTGCACaataaagagaaagaaggaaataCAACTGAAAAAGACACTAACAAGAGTAAATCACAATAAGCGATTCCTGATACACAGAATTATCTCATAAATGTTCCCGGATAGAAGTTCACTGAATAGCTGTTTAGGTGTGTCCTGCATCAGACATTATGAGAAGCTGAGCATTTGTATTCACCCGAGGTGCTGACATTTCCCCCCAGAAGATTTTCATCGTTGTGTCCAAAAAGTAATGGGTAGTTCCTTTTTGTTAAAGGTTACCTTATGTAAAAGTATTAACCAAATTCTGCTTTCAACCCTTAAATGAAGCACCTTtttcactgaaatgaaaaacactgaCTGGCCtcaaataatgttataatattaAAACCCAAGATGAAAACTCAGTAGTTAATGGACATAGAGGAGCATATGTGTTGTATGGAGTCCTGATAAGTGAAATCAGTGTTAAGTCTTAAAAcagtgttaaattatatatatatataaaaaaaatgtatcaaatagaTATCTTCAATCGATATATCTAACATTTTCACGTGTATTTATAAAGCCTGAGTAAGACAGTAATATGCACTATTAAAATGCCACAGGTGAAATACTAATGCTTTataaacacactgcacactcagAGATTTCGTCTCCTTTGGGTGGGTTAGCTACtgctgttttacattattttatatatatgtaaattttAACAAATATCCACAACAAAGTAAATCTGCCATAAATGTTTTCGACAAAGTTCCTTTCAACTGAACTGATGTAGTGAGAAACAGATGCCACTTTTATGACATGGGTTTACTAACATGAAATTCGTTACAGCAGAGGTTACAGCGATACTCACAGCTGGAGCATGAAGATCTGTTATAACTCCAGATGCAGCGACTGAACCACATGCGGTTAGTCAAAACTGTACAAAGCGGCAACCCACCCTTTGTGCTGCACAGGAGAGTAACAACAAAACTGTAGCTGTGTAagacaatattatatatatgacatacatacacacacactgggatTATATATATTGGAAAGAAGATCTGAGACATTATCAAATACACATAGTCAATGGACACACATAATGAACAGTCCTAAAGATAACTTTTTCATAGAATACTTTCATAAATGcccttgaaatgcatttattcagagaaattaaaaatacagtccctaaaataaataactaaatgtccCTACAATATACCTTTACttagtaaatataaattaaacaactcTAGATTAGTTTCTCATCTATTTGGTCTATGGAGATCGTAAAACATCAAATCTTCATGTTTTGAAGAAGACTCAGCCAAgtagtcatttatttatctatacatctatatatatatatatatatatatatatatatatatatatatatctatatctctattacacacacacacacacacacaattacgaTTATTTTAGTCAAAACAATTGCTTCCACTATCTCCACAGAAACAGTGGAGAAAAACAATGAGACAATACACTGATCCATAAAACTTTATCttatatgatttttaaataatgcccTTCTAACGATGTCCGATGTTTTACTCTCCCCACCATTTCAAGGCTTTAGTCCCAAGTAGATAAAAGGCATCAGCATAAAGCATCTATAAAGGTTCTGCAAGCCAAATCTCTATTATTTCTTACAGAAGGAACaagaacccccccaccccactcaaACCCATACCCGCACACTCCTACACCCTCAACTCTCCTTGAACTGTGCTTCATAAagaaatatttcacaaatttTAGTTCTAATCAGTTAAAGGGTTAACATGTCAAgtagaaaagtaaaaatgacCTTTTAAGTGTTCAGAATTTAGAACCCGGCACTGCCCAACCTAGcaaaaaagtgacaaaaaatATGACTGAAACGGTAAACGCAAATAAAACATCTCACtgcaggaataaaataaaataaaacactcatcAGTAACTTTAgttaatcacaaaacaaaaactcttaGTTCTACTTCAAGCATTCCTTTGCGTTAGTATATAGTGCCACTTCTGCAATAGGTGGATGCTAAAAGGAGCCAAATAGTGTCACAATCATAAAAGTGtccctaaccctaaaacctaagctaactaaaaaaataaattaaaaaatagacatgaaCAAAAGAGTTTGCATGCACATTAACTACAGACATGACTTATTTTTTTTGACAGTGACTGTTATCTGGCAAAACATTGGACTCTTCTCTGTAACACCcattatacattttgcacattGTTAATCTCTGAAGTCCCACTTCGAAGCTGGTGCGGGGCTTCCGTTCTCTAAACGCCGAAAACGTCTTTAATTCATAATCTGCAGGCCTCAATGATAGGCACCATTTCACACCTACTTTCTGCATTCAAGATTGTGTATCTAATAGGTTCTGACTCTGAATACACCATATTGAAGTGCTTCACCCCCTCCACCCTCAAATCCTTACAATTtctgtgtcaaaataaaatgtttttttgtttttgttttttttttacattcactGAAACATTTGctccttcaattaaaaaaaaaaaaaaaaaaattgaaagtcCATCCTGAAACAATGCAGGATTCCATCAGTTTGTAGTAAAAGCACCAACGTGAGTAAGAAGTCTGACTTAGCTGGAAAagaccaaacaaacaataatacagtatactcTCTCACATGAAACATACTTATAATATGATTGAGAAAGGTGAACTTTAAACTGAGGTAAGGAATTTCATTATAGGtaacagtattttacagtatgtcTAAACTAAAAACTGAATACGTCTGGGCTCTGTATATACAAGGCACAGAAAACTGGTGCAAATACAAAGTTTTCTACAGAGGACAAACTAAAGCAAACAAGATTCATTTTACTGCACACGGAACTTGGGTAAAGTTTAAACCTCTGACATGAAACAACTGCCCCAGCCTCTTAATTTGGCAAAAGGCTGGACATATTCCTTTCTATTCTGAAGTCATTTGAACAGCTGTATAAAACATTGGAGACCACTTGCAAACAGAGAGGTCTAGAAATCTTGCCGGATCTCTACATTTGCCATCGCAACCTATGTTTCACTCCAGGGAGCGACGATGTTAACGCTGCATTACAATTTCATAATCTGTTCAAGTCTGAGACATGGTGTCACTGTGGAACTaatcaaaactgaaactgaggaggtttcttacaaaaaaaaaaaaatatatatatatatatatttatatacacagtcccatttaatgtattcattcatagATTTGAATTTGACTACTGTTACACCAGGAGGATTCTTCAGATTTGTACTGCCCTTCTTCCGATGTGAAACAAAATCCCATTTGGTGTGGTACTCCCAGTGTGAACTGCACTGTTTTTAGATTGTtaattgagattaaaaaaacaaacatctattTGACCAGCATCTTAAACTGAAGGCAGAAGCTAAATTACCTTGAGTTTCACAATAGATATTTCAGAAGCGGCCAATGCACTGATCCAGCAAAGAAGTGCCGGGTGTATTTGTTCGGACATTCAATTAGATCAACTGCACTGCAGACCGCACTGAAAAATACCAATTGCTAATCAGTGCTATATTTCTGGTAGACCGCTCCGAAAGATTTAATGGCTTTTTACAGCGGAGTGCTTATTCAGAGTGTTTGACTTCAGAAGACTTCACAATGAATCTAAGGTAGAGCCTCAACCACTACACTTGGCGGCCCACTTTTCGCTATCCACGTACATTACACGACTATTTGACTGCGGTCAGTGATTGCCTTTTTTATATCTCTGACGTGTCGTAGATTTTAACAAGATACAGGATCGCTTAGGCTTCAGGCACATAGGTTGTCATCAGCATTAAGATTGTTATCACAATTTCCAAAGCTTTTTGTGTCCATTTGAAGCTTTCAATTGACAGTATCCGTGAACTGAGAAACAATTTAGATTGCAGGACAAaatgcacttgtattgttttgtcCCCTTTTTAGAACTTTCTCAGTTACCATGCGTTAGGAAGCATACAAATGACAGCCATTATTATGAGGCAcaaaaagctgtgaaaaaaGTCTTAGTAgaaaacttacaaaataaacacatactgcGGACCATTAACTATATTGTAAAAGCATGGCTGGAAATGACCaatattttagatatttaacATATTTGGATCCTGTGTGAGCTGAGATTAGCCCAGTACTGACCATCTGCTTACCCCATCTTCCCACCCCCTTCCAAAACATTTCATAATGCACCCCCCCACAGTAATAACTAATTTCTCTGCTAAGGTTGTGTCTGATTTCAGCCATAGATTAAGTGGTTCTTGGAGTTCGCCCATTTTAAGCCTGTTCCAGTGTTTCCTTTATGATGCAGTGGGTTAAACGTTGGGAGCAAGTCATTGTGCGCATTGCTAACCAGAAGGTTGATACTGCTCACTGTTGGGGCACTACTTCCAGCATCTTCTGGCATAAAACAGTCGATGAAA
>TU80134
ttttatgcattttttaaattttattccaggaaaaaacaaaacaagtcaacagatcaaataattgtttttaacaaaagagcaatgaaaaacatcaataaGTAAAGTTTCTTCTTTCCATACATTTTTCCTCTCAAATGAGTTCAGAAAACATACACACGAGCTAAACAAGagagacaaattaaatgtgacCATACTAagatgaaacaaacaagaagaaatTGGTTCAGAATTGTTGCACaataaagagaaagaaggaaataCAACTGAAAAAGACACTAACAAGAGTAAATCACAATAAGCGATTCCTGATACACAGAATTATCTCATAAATGTTCCCGGATAGAAGTTCACTGAATAGCTGTTTAGGTGTGTCCTGCATCAGACATTATGAGAAGCTGAGCATTTGTATTCACCCGAGGTGCTGACATTTCCCCCCAGAAGATTTTCATCGTTGTGTCCAAAAAGTAATGGGTAGTTCCTTTTTGTTAAAGGTTACCTTATGTAAAAGTATTAACCAAATTCTGCTTTCAACCCTTAAATGAAGCACCTTtttcactgaaatgaaaaacactgaCTGGCCtcaaataatgttataatattaAAACCCAAGATGAAAACTCAGTAGTTAATGGACATAGAGGAGCATATGTGTTGTATGGAGTCCTGATAAGTGAAATCAGTGTTAAGTCTTAAAAcagtgttaaattatatatatatataaaaaaaatgtatcaaatagaTATCTTCAATCGATATATCTAACATTTTCACGTGTATTTATAAAGCCTGAGTAAGACAGTAATATGCACTATTAAAATGCCACAGGTGAAATACTAATGCTTTataaacacactgcacactcagAGATTTCGTCTCCTTTGGGTGGGTTAGCTACtgctgttttacattattttatatatatgtaaattttAACAAATATCCACAACAAAGTAAATCTGCCATAAATGTTTTCGACAAAGTTCCTTTCAACTGAACTGATGTAGTGAGAAACAGATGCCACTTTTATGACATGGGTTTACTAACATGAAATTCGTTACAGCAGAGGTTACAGCGATACTCACAGCTGGAGCATGAAGATCTGTTATAACTCCAGATGCAGCGACTGAACCACATGCGGTTAGTCAAAACTGTACAAAGCGGCAACCCACCCTTTGTGCTGCACAGGAGAGTAACAACAAAACTGTAGCTGTGTAagacaatattatatatatgacatacatacacacacactgggatTATATATATTGGAAAGAAGATCTGAGACATTATCAAATACACATAGTCAATGGACACACATAATGAACAGTCCTAAAGATAACTTTTTCATAGAATACTTTCATAAATGcccttgaaatgcatttattcagagaaattaaaaatacagtccctaaaataaataactaaatgtccCTACAATATACCTTTACttagtaaatataaattaaacaactcTAGATTAGTTTCTCATCTATTTGGTCTATGGAGATCGTAAAACATCAAATCTTCATGTTTTGAAGAAGACTCAGCCAAgtagtcatttatttatctatacatctatatatatatatatatatatatatatatatatatatatatatctatatctctattacacacacacacacacacacaattacgaTTATTTTAGTCAAAACAATTGCTTCCACTATCTCCACAGAAACAGTGGAGAAAAACAATGAGACAATACACTGATCCATAAAACTTTATCttatatgatttttaaataatgcccTTCTAACGATGTCCGATGTTTTACTCTCCCCACCATTTCAAGGCTTTAGTCCCAAGTAGATAAAAGGCATCAGCATAAAGCATCTATAAAGGTTCTGCAAGCCAAATCTCTATTATTTCTTACAGAAGGAACaagaacccccccaccccactcaaACCCATACCCGCACACTCCTACACCCTCAACTCTCCTTGAACTGTGCTTCATAAagaaatatttcacaaatttTAGTTCTAATCAGTTAAAGGGTTAACATGTCAAgtagaaaagtaaaaatgacCTTTTAAGTGTTCAGAATTTAGAACCCGGCACTGCCCAACCTAGcaaaaaagtgacaaaaaatATGACTGAAACGGTAAACGCAAATAAAACATCTCACtgcaggaataaaataaaataaaacactcatcAGTAACTTTAgttaatcacaaaacaaaaactcttaGTTCTACTTCAAGCATTCCTTTGCGTTAGTATATAGTGCCACTTCTGCAATAGGTGGATGCTAAAAGGAGCCAAATAGTGTCACAATCATAAAAGTGtccctaaccctaaaacctaagctaactaaaaaaataaattaaaaaatagacatgaaCAAAAGAGTTTGCATGCACATTAACTACAGACATGACTTATTTTTTTTGACAGTGACTGTTATCTGGCAAAACATTGGACTCTTCTCTGTAACACCcattatacattttgcacattGTTAATCTCTGAAGTCCCACTTCGAAGCTGGTGCGGGGCTTCCGTTCTCTAAACGCCGAAAACGTCTTTAATTCATAATCTGCAGGCCTCAATGATAGGCACCATTTCACACCTACTTTCTGCATTCAAGATTGTGTATCTAATAGGTTCTGACTCTGAATACACCATATTGAAGTGCTTCACCCCCTCCACCCTCAAATCCTTACAATTtctgtgtcaaaataaaatatttttttttttttta
>TU80136
GCCAGATCTGTTCTTTCTAACACTAACACAGTTTATAACATCTGCAttgccttttcatttcattgttttgtacTTGCCTAATTTCCCTTTGGGTAGACTGTAATCATTCTAAATAACCATTCATGTCAAATTAGCTTCCGAACTCAGATGTGAGAcccaagacacagagagctctgcTGACTCTTAACTAGTTATTTTTGCAGTTACAGTTAATGTGcaagttttttaaagaaacgcacgcacacacacacacacacacacacacacacacacacacacaattacgaTTATTTTAGTCAAAACAATTGCTTCCACTATCTCCACAGAAACAGTGGAGAAAAACAATGAGACAATACACTGATCCATAAAACTTTATCttatatgatttttaaataatgcccTTCTAACGATGTCCGATGTTTTACTCTCCCCACCATTTCAAGGCTTTAGTCCCAAGTAGATAAAAGGCATCAGCATAAAGCATCTATAAAGGTTCTGCAAGCCAAATCTCTATTATTTCTTACAGAAGGAACaagaacccccccaccccactcaaACCCATACCCGCACACTCCTACACCCTCAACTCTCCTTGAACTGTGCTTCATAAagaaatatttcacaaatttTAGTTCTAATCAGTTAAAGGGTTAACATGTCAAgtagaaaagtaaaaatgacCTTTTAAGTGTTCAGAATTTAGAACCCGGCACTGCCCAACCTAGcaaaaaagtgacaaaaaatATGACTGAAACGGTAAACGCAAATAAAACATCTCACtgcaggaataaaataaaataaaacactcatcAGTAACTTTAgttaatcacaaaacaaaaactcttaGTTCTACTTCAAGCATTCCTTTGCGTTAGTATATAGTGCCACTTCTGCAATAGGTGGATGCTAAAAGGAGCCAAATAGTGTCACAATCATAAAAGTGtccctaaccctaaaacctaagctaactaaaaaaataaattaaaaaatagacatgaaCAAAAGAGTTTGCATGCACATTAACTACAGACATGACTTATTTTTTTTGACAGTGACTGTTATCTGGCAAAACATTGGACTCTTCTCTGTAACACCcattatacattttgcacattGTTAATCTCTGAAGTCCCACTTCGAAGCTGGTGCGGGGCTTCCGTTCTCTAAACGCCGAAAACGTCTTTAATTCATAATCTGCAGGCCTCAATGATAGGCACCATTTCACACCTACTTTCTGCATTCAAGATTGTGTATCTAATAGGTTCTGACTCTGAATACACCATATTGAAGTGCTTCACCCCCTCCACCCTCAAATCCTTACAATTtctgtgtcaaaataaaatgtttttttgtttttgttttttttttacattcactGAAACATTTGctccttcaattaaaaaaaaaaaaaaaaaaattgaaagtcCATCCTGAAACAATGCAGGATTCCATCAGTTTGTAGTAAAAGCACCAACATGAGTAAGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU80133 True 4718 lncRNA 0.35 2 24520836 24525575
TU80134 False 2732 lncRNA 0.33 3 24520836 24565492
TU80136 False 1485 lncRNA 0.36 3 24488904 24540707

Neighbor

gene id symbol gene type direction distance location
AMCG00020543 NA coding upstream 35304 24447276 ~ 24453600 (+)
AMCG00020537 map1lc3b,LOC107701564,LOC107714047,LOC107654145,LOC107581828 coding upstream 144969 24330886 ~ 24343935 (+)
AMCG00020531 clec3a coding upstream 180744 24304634 ~ 24308160 (+)
AMCG00020533 vat1l,LOC106562097,LOC106587190 coding upstream 217871 24251075 ~ 24271033 (+)
AMCG00020532 NA coding upstream 239653 24245541 ~ 24249251 (+)
AMCG00020552 NA coding downstream 48381 24613873 ~ 24619867 (+)
AMCG00020553 NA coding downstream 57052 24622544 ~ 24630704 (+)
AMCG00020551 NA coding downstream 74306 24639798 ~ 24641669 (+)
AMCG00020556 csnk2a2,LOC106573643 coding downstream 111197 24676689 ~ 24688415 (+)
AMCG00020562 NA coding downstream 140943 24706435 ~ 24707136 (+)
G64009 NA non-coding upstream 246227 24232739 ~ 24242677 (+)
G63951 NA non-coding upstream 395667 24088514 ~ 24093237 (+)
G63948 kars,LOC107738348,LOC107584690,LOC107679917 non-coding upstream 412429 24075049 ~ 24076475 (+)
G63947 NA non-coding upstream 416744 24070716 ~ 24072160 (+)
G63898 LOC108433019,LOC103398424 non-coding upstream 589150 23898507 ~ 23899754 (+)
G64069 NA non-coding downstream 28638 24594130 ~ 24597787 (+)
G64121 NA non-coding downstream 126505 24691997 ~ 24695554 (+)
G64122 NA non-coding downstream 131110 24696602 ~ 24696809 (+)
G64158 NA non-coding downstream 244472 24809964 ~ 24811811 (+)
G64185 NA non-coding downstream 379769 24945261 ~ 24946210 (+)
G64046 NA other upstream 6790 24478835 ~ 24482114 (+)
AMCG00020529 LOC107090538 other upstream 420447 24033037 ~ 24068457 (+)
G63939 NA other upstream 433312 24051989 ~ 24055592 (+)
G63786 znf821,LOC107747380 other upstream 1413959 23070411 ~ 23074945 (+)
AMCG00020505 NA other upstream 1426755 23053798 ~ 23062149 (+)
AMCG00020572 NA other downstream 496881 25062373 ~ 25076690 (+)
AMCG00020573 NA other downstream 512650 25078142 ~ 25084873 (+)
AMCG00020585 NA other downstream 893604 25459096 ~ 25472886 (+)
G64372 NA other downstream 985419 25550911 ~ 25553320 (+)
AMCG00020603 NA other downstream 1196643 25762135 ~ 25778982 (+)

Expression


Co-expression Network