AMCG00020537 (map1lc3b,LOC107701564,LOC107714047,LOC107654145,LOC107581828)


Basic Information

Item Value
gene id AMCG00020537
gene name map1lc3b,LOC107701564,LOC107714047,LOC107654145,LOC107581828
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 24330886 ~ 24343935 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00020537
CTTCGATAcagtctgtgattggctgataCTCGGTTAATTCTTGGAAGCGATACGTGCTGTGATTGGTCGATTCGTGGTAAAGCTTGGGAGCGATAGAGGCTCAACTGGGCAGAGCTGCCACGATTGAACCTCGGCTCTCACCTGCCGAAAGTATCGATTCACACATGTAACTTTCTAaacttttgtatattttacGCTAATTCATTAACAATACGCCAAGCACTGTGTTTAAGGCCCGCATGTAGAGCTCCCGCCCCCTCTGCTGGACACACTGCGCACCGACGACAAGTGGACTTTCcagacagctggagcaggaAAGAGAAAAGACTCATCGGCCGACTTATTGTTCTCCGGTTTAGGCTCTGAAATTGCCAATATTATTGAAAAATCCCACTGGTATCTGACAGTTGTTTCGGCCTGAATACAGAACAGATTTAACTTCAGCGGATAAACATGCCTTCAGAAAAGACCTTCAAACAAAGGAGGACATTTGAGCAACGCGTGGAGGATGTGAGGCTGATCAGAGAGCAGCACCCAACCAAGATACCTGTCATCATTGAGAGGTACAAGGGTGAGAAGCAGCTTCCCATTCTGGACAAAACCAAATTCCTTGTCCCTGACCATGTGAACATGAGCGAGCTGATCAAGATTATCAGCATGGTGAGCGTGTCCACACCCATTTCCGAGGTGTACGAGCGAGAGAAAGATGACGACGGCTTCCTCTACATGGTCTACGCGTCTCAGGAGACCTTCGGAGGACACGTCAGCCTG

Function

symbol description
map1lc3b Predicted to enable microtubule binding activity and ubiquitin protein ligase binding activity. Predicted to be involved in autophagy of mitochondrion; cellular response to nitrogen starvation; and macroautophagy. Predicted to act upstream of or within autophagy. Located in cytosol. Is expressed in several structures, including cardiovascular system; central nervous system; liver; neural tube; and pleuroperitoneal region. Orthologous to several human genes including MAP1LC3B (microtubule associated protein 1 light chain 3 beta).

NR:

description
PREDICTED: microtubule-associated proteins 1A/1B light chain 3B

GO:

id name namespace
GO:0006914 autophagy biological_process
GO:0005829 cytosol cellular_component

KEGG:

id description
K10435 MAP1LC; microtubule-associated protein 1 light chain

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00020537 True 771 mRNA 0.48 6 24330886 24343935

Neighbor

gene id symbol gene type direction distance location
AMCG00020531 clec3a coding upstream 22726 24304634 ~ 24308160 (+)
AMCG00020533 vat1l,LOC106562097,LOC106587190 coding upstream 59853 24251075 ~ 24271033 (+)
AMCG00020532 NA coding upstream 81635 24245541 ~ 24249251 (+)
AMCG00020534 LOC104940465,LOC106520303,LOC103466051 coding upstream 98487 24226001 ~ 24232399 (+)
AMCG00020536 NA coding upstream 105817 24216071 ~ 24225069 (+)
AMCG00020543 NA coding downstream 103341 24447276 ~ 24453600 (+)
AMCG00020552 NA coding downstream 269938 24613873 ~ 24619867 (+)
AMCG00020553 NA coding downstream 278609 24622544 ~ 24630704 (+)
AMCG00020551 NA coding downstream 295863 24639798 ~ 24641669 (+)
AMCG00020556 csnk2a2,LOC106573643 coding downstream 332754 24676689 ~ 24688415 (+)
G64009 NA non-coding upstream 88209 24232739 ~ 24242677 (+)
G63951 NA non-coding upstream 237649 24088514 ~ 24093237 (+)
G63948 kars,LOC107738348,LOC107584690,LOC107679917 non-coding upstream 254411 24075049 ~ 24076475 (+)
G63947 NA non-coding upstream 258726 24070716 ~ 24072160 (+)
G63898 LOC108433019,LOC103398424 non-coding upstream 431132 23898507 ~ 23899754 (+)
G64048 NA non-coding downstream 144969 24488904 ~ 24565492 (+)
G64069 NA non-coding downstream 250195 24594130 ~ 24597787 (+)
G64121 NA non-coding downstream 348062 24691997 ~ 24695554 (+)
G64122 NA non-coding downstream 352667 24696602 ~ 24696809 (+)
G64158 NA non-coding downstream 466029 24809964 ~ 24811811 (+)
AMCG00020529 LOC107090538 other upstream 262429 24033037 ~ 24068457 (+)
G63939 NA other upstream 275294 24051989 ~ 24055592 (+)
G63786 znf821,LOC107747380 other upstream 1255941 23070411 ~ 23074945 (+)
AMCG00020505 NA other upstream 1268737 23053798 ~ 23062149 (+)
AMCG00020487 NA other upstream 1921393 22356174 ~ 22409493 (+)
G64046 NA other downstream 134900 24478835 ~ 24482114 (+)
AMCG00020572 NA other downstream 718438 25062373 ~ 25076690 (+)
AMCG00020573 NA other downstream 734207 25078142 ~ 25084873 (+)
AMCG00020585 NA other downstream 1115161 25459096 ~ 25472886 (+)
G64372 NA other downstream 1206976 25550911 ~ 25553320 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
eurasian perch (Perca fluviatilis) G190137 mthfd1,LOC104933183,LOC107105141 misc NC_053129.1 CM020926.1 35432678 ~ 35935142 (-)
mexican tetra (Astyanax mexicanus) G190214 NA non-coding NC_035918.1 CM008321.1 15718099 ~ 15798757 (-)