G190214


Basic Information

Item Value
gene id G190214
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 15718099 ~ 15798757 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU257868
aGAAGCAGTGTAATGCAGAATAACATGCAGAACACCATGTCTGCGcatctgttattttaatcaCATCCCTTTACAAATAAACAATCAGCAATTCAAtacaaaaaatcataaaaacagcttcatttttctcaagtctaaacaaactttttaactcatttaaaaaaaataggaaacatTTTTGGTCAGAGTGATCATACTATTAACAGCAACAGCTTAAGGAAGGGACGTCCCGATCAGATTACTAAACGATTGTTCGGGTAAAagtggctcaaatctgattttctgtcCAAATCTGATGATTAGTTCAGGCAGTTCATAAAatcaatataattatttttaaatgagacCCATATCTGACATCTATCTAAATGCTTGTTGCTTTGTAAGTGGCATACATGATCCATGATAGAGCAGtgcttcacgttaagtttcGCTTTAATCCAGCATAATAAATCAGTATCTCAAGGGCCATGAATGAGCTTATCACAAATAACTCTCTTTAGCTCACTTCTTAGCTCAAGACATGTTATTTCAACCACTTTTTAACTTTGACACTGCAGTCAAACAATCTGTAGCCACGTTCGGAcaatttattaggaacaccaCATGGTTCGAACAGTCCAAATATTTGTTCCTGAGCTCCGTTAACTAATTCTTCCACCACTAAAAGCCTTTTTCACCACTGTTGTCCATTTTTACGTCCAATTATACGTATCTTTTGTTCTCCTTgcagtcttttttttcctttatgatTTGGATGTTCAGACATAGTCGCACTGACACAATTAGGATATGTATTAGATTTCAACATCACATAGTGATGTGGCtcaaatcaaaatatatatatatatataaaaaaaagagttgaggaagaaaataaaacatgcaaGATACGTAGTGCATCATATAAACCCTTCACTGAAGTTTTGGACAGAAGGCAAACGCGTCGCGTCGTGATGGAAAACGTAAACGGAAAGAAGCTGGATAGAAAATACAACGATTCTGTGCTACAATTATATTAGAGTTCTCAATTTCAAAGAGTTTAGAGTTTATCCTCTCTTAGCTGTTCTGTTTCATTTGTGCAAAAGAAGCATATTCAGgtctgtttattatatttattatatttattacagttacagtGTTGTAGTGCCTAAACAAACCTCGCCTGCCATCTATGTAGTGTTGTTCTGTTCCTCCGGCTGCACTGGAGTTAAGcgttcacacacaaacacacacaggccgCATTCATACTCGCATATTTTAGGCTCGACTGACTCCTACAGCTATATTTGTAAATGCACGGCGCATTCTGCAAACCTGGCGGCAGAAATATGAACTAAAAACAGCATGTAAACCAACATTGAGCTCAGCGAGGAGACGAGTCTGAACACAGTTTAACACACGGGTCAAATTAACTCCTAACTAGGGCtgggacaaaatatatatatcaatattgtgatatatacactgcaaaaaccttattcttagcaagtgaaattaactagttttaaggcaataaatcttatttttttctctgatacatTTTTGGTCTTACTAAGCATCGTAAGTGtagattttgtttttacttattttaggaatattaTCTTATTCAGTCTCACTTAGAAGTTTCACCTTTTCTTAAGTAATTTAGATTCAAAATAAGCACAGAAAGTTACTAGTCAAGTTTTATTGATTCTTGTCTACAAATTTAAGCCactttttgcttaatttaggcttatttcactcattttgaaactttgtgattaatcatttaaaaaaattcttactaagaaaaattcGCTCACCCcatttgcagattttttttgcttagtttaAACATttgtctcaatttacatatattttgtctagctTTGCTGTGTAGTATtgattttaagcatttctaAAATTATCTATcaagactatgaagaaacatataaggaatcatgtagtaacttaaaataaaggtgtagtaaataaaagtgttaaacaaacctaaaaaacactgtaagctggtaactctgcggaacttatcctgtaaaacagaggaaactcttactcttatttatttttctggagCAGAGCTGATgaatgccagtttcatcattattataataattatgaagtttttgatggtcttttttaagtttactaaataattccatatttaaggtgtgtccaaatttgtGACTGGTactcatacatatatatttatatatatcaaGTATCGCAAAATCACTGTATCGTGATGTGATATATCATAATACGTATGTGGGCAATGTATATCGTTATCAAatccctatccggacaggacaggattagattagattagtttctctctaattttagtcccgtccggacgcacatctctgagtttcgtctcctcgcctttaataaattagatatttgtccactgccgcgcaccgtaattacactttggatgcgccacggtttccacggagatccacgtagaaaaaaaaaacacaacagtgagtggagaTGGAGGGGCTACTGAACTCCGCGATGAGGTCATGTgacctcactggtcctcctgttttataaattgcagtccggatgcaggagttttatcactgtagagtagaagtgtgaaatactAGTGAGTAACTAATCCTATCCAGATGTAGggctttatttaaaacagggtgcgtaacactgtgtgtgtgttttttttttttttattcactctaGTGGTGAATAGATGTTACTGCAGCAGGTAATACGAGTACATGTTAGGAAGTCTacagtttctctctttctttgtttctttctttctttcacttcgTTTTACTTTAAGGaaagactaaaataaaaatctcacTCCAGCGTCAGAGTCGTACAGATTCGGTCGGATTTGGCTGATTACTACAAGCAAGCAGTAAATGCAACAAAGCCTAAACTACACACTtacttttataattataaaaattataatagcACTCACCTACATGTATTTACAAATGACAGGAAAAGTGTTGCTAATTATGCTAATTATTTTACACACCGgtacaaataaaatcaaataaaatcaaaaatttaaaattaaaagaacgTGCAAGGCCTGAGCTCAGGGTCAGAACGTCTTCTTACGTTGAACGCCCAGGCTTTATACATTACTGTGTCACTAACTggggaaaaaatgaataattattattattattattattattattattattaagtgggCGGGGTTAAAAAcgaaactaaaaaataaacacaagcaaTCGAGGGGTGAATCTAGCAGGTACAGCAGTGCTGTTGCACGAGGACTCGTGTCGTAATGAGACACAACAATGGTAGTGTTAGTTTGAAGATGGCAGGAGAGAAGCTAAggggttttttttgtagtttttaagaGAGAAACACAAAAGGGGCGTGGCCTCGGTTAGCCGTAGCACATTAGCTCCCTGGGCGTTTCTCGTTCTCTGCTCGCTCTCTCTAATCTAATCTCTAATCGTGAGGAGGTTAGCCGTTAGCTTAGCAGCCGAAAGTCTCCTGCGAGGCGTAGACCATGTAGAGGAAGCCGTCCTCGTCCCTCTCCTGCTCGTAGATCTCAGAAATGGGTGTGGACACGCTCACCATGCTGTGCTGATTGACCAATAGGAAGAAGGCCTGGGTCGGGTTCAGCTGCAGACGACG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU257868 True 3654 lncRNA 0.36 2 15718099 15798757

Neighbor

gene id symbol gene type direction distance location
ppcs ppcs,LOC107685733,LOC107565714,LOC107551114,LOC107749447,LOC107691385 coding downstream 193926 15519665 ~ 15524173 (-)
rbm12 rbm12,LOC108424674,LOC107685660,LOC107749443,LOC107551121,LOC107581359 coding downstream 213708 15495710 ~ 15504391 (-)
LOC103034615 LOC108424674,LOC108254857,LOC107685660,LOC107749446,LOC107727818,LOC107691350,LOC105912234 coding downstream 214451 15468213 ~ 15503648 (-)
LOC103026384 LOC108424671,LOC107566077,LOC107691346,LOC107727851 coding downstream 310130 15359175 ~ 15407969 (-)
LOC103025355 NA coding downstream 412892 15296659 ~ 15305207 (-)
LOC103030908 LOC103362890,LOC104939527,LOC101063010 coding upstream 15463 15814220 ~ 15825239 (-)
LOC103047460 NA coding upstream 33331 15832088 ~ 15833721 (-)
LOC103030277 LOC108415871 coding upstream 48104 15846861 ~ 15851191 (-)
LOC103029523 iqsec1b,iqsec1,LOC108424663,LOC107691341,LOC107551128 coding upstream 70378 15869135 ~ 16138293 (-)
wnt7a wnt7a,wnt7aa,LOC108424657,LOC107749431,LOC107685644,LOC107727836 coding upstream 721787 16520544 ~ 16556758 (-)
G190204 NA non-coding downstream 110194 15597327 ~ 15607905 (-)
G190199 NA non-coding downstream 148828 15556521 ~ 15569271 (-)
G190183 NA non-coding downstream 266529 15388095 ~ 15451570 (-)
G190171 NA non-coding downstream 363467 15353437 ~ 15354632 (-)
G190001 NA non-coding downstream 433384 15209617 ~ 15284715 (-)
G190252 NA non-coding upstream 110278 15909035 ~ 15909528 (-)
G190257 NA non-coding upstream 167738 15966495 ~ 15969045 (-)
G190265 NA non-coding upstream 196439 15995196 ~ 16002227 (-)
G190268 NA non-coding upstream 203507 16002264 ~ 16043340 (-)
G190234 NA non-coding upstream 215510 16014267 ~ 16016150 (-)
LOC103026676 LOC108424672,LOC108254855,LOC107691347,LOC107749448,LOC107685659,LOC107551122,LOC106582641 other downstream 251515 15409207 ~ 15466584 (-)
LOC103024926 dynlrb1,LOC106565026 other downstream 395924 15318643 ~ 15322175 (-)
tsen2 NA other downstream 2641357 13062799 ~ 13076742 (-)
LOC111195455 NA other downstream 3004067 12612611 ~ 12714032 (-)
G190405 fbln2,LOC108424659,LOC107727849,LOC107691338 other upstream 546944 16345701 ~ 16460928 (-)
ptpdc1 NA other upstream 770866 16569623 ~ 16599317 (-)
cass4 NA other upstream 1035093 16833850 ~ 16869461 (-)
irf6 irf6,LOC107599105,LOC106565674 other upstream 1382357 17181114 ~ 17193747 (-)
G190788 NA other upstream 1418564 17217321 ~ 17219780 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00020537 map1lc3b,LOC107701564,LOC107714047,LOC107654145,LOC107581828 coding CM030127.1 CM030127.1 24330886 ~ 24343935 (+)