G190001


Basic Information

Item Value
gene id G190001
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 15209617 ~ 15284715 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU257566
gggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtcagtgtgtgtgtgtgcgcgcgcgctcTTTGGTCCTCtgctggagagagaaagagcaggagCAACTCTCACACTCTGTTCTTCTGTTTCATCGCCGCTGTCGCattctttcacacacactctccacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacagagcagctggattctctctctctgggctgAGAGAGCAGAACGGAATAGAACAGTGGAGAGAGAAGCGTTGTGGATTCTACccgctgcctgtctctctctctctctgtctctctctctctgtctctct

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU257566 True 387 lncRNA 0.52 3 15209617 15284715

Neighbor

gene id symbol gene type direction distance location
LOC107197607 ptk6,LOC108231632 coding downstream 46856 15134775 ~ 15162761 (-)
LOC103042998 ptk6,LOC108255075,LOC103372356 coding downstream 79148 15100475 ~ 15130469 (-)
LOC103044311 ube2v1,LOC107572061,LOC105022328,LOC106572481,LOC107683645,LOC103044311,LOC108425074 coding downstream 113475 15090225 ~ 15096142 (-)
LOC103042686 LOC103042686,LOC108424612,LOC108255211,LOC105895941,LOC104930306 coding downstream 121928 15073621 ~ 15087689 (-)
tp53rk tp53rk coding downstream 148529 15056169 ~ 15061088 (-)
LOC103025355 NA coding upstream 11944 15296659 ~ 15305207 (-)
LOC103026384 LOC108424671,LOC107566077,LOC107691346,LOC107727851 coding upstream 74460 15359175 ~ 15407969 (-)
LOC103034615 LOC108424674,LOC108254857,LOC107685660,LOC107749446,LOC107727818,LOC107691350,LOC105912234 coding upstream 183498 15468213 ~ 15503648 (-)
rbm12 rbm12,LOC108424674,LOC107685660,LOC107749443,LOC107551121,LOC107581359 coding upstream 210995 15495710 ~ 15504391 (-)
ppcs ppcs,LOC107685733,LOC107565714,LOC107551114,LOC107749447,LOC107691385 coding upstream 234950 15519665 ~ 15524173 (-)
G189987 NA non-coding downstream 6851 15198426 ~ 15202766 (-)
G189958 NA non-coding downstream 12558 15059956 ~ 15197059 (-)
G189956 NA non-coding downstream 74191 15101728 ~ 15135426 (-)
G189951 NA non-coding downstream 168375 15039981 ~ 15041242 (-)
G189867 LOC108424607 non-coding downstream 295552 14906176 ~ 14914065 (-)
G190171 NA non-coding upstream 68722 15353437 ~ 15354632 (-)
G190183 NA non-coding upstream 103380 15388095 ~ 15451570 (-)
G190199 NA non-coding upstream 271806 15556521 ~ 15569271 (-)
G190204 NA non-coding upstream 312612 15597327 ~ 15607905 (-)
G190214 NA non-coding upstream 433384 15718099 ~ 15798757 (-)
tsen2 NA other downstream 2132875 13062799 ~ 13076742 (-)
LOC111195455 NA other downstream 2495585 12612611 ~ 12714032 (-)
G189335 psma5,LOC107685984 other downstream 2590051 12614912 ~ 12619566 (-)
mapkapk3 mapkapk3,LOC102784126,LOC107384936,LOC101473327,LOC102305022,LOC102199310,LOC106525176 other downstream 2814085 12298049 ~ 12395532 (-)
eogt eogt,LOC107729408 other downstream 3031007 12160542 ~ 12178610 (-)
LOC103024926 dynlrb1,LOC106565026 other upstream 33928 15318643 ~ 15322175 (-)
LOC103026676 LOC108424672,LOC108254855,LOC107691347,LOC107749448,LOC107685659,LOC107551122,LOC106582641 other upstream 124492 15409207 ~ 15466584 (-)
G190405 fbln2,LOC108424659,LOC107727849,LOC107691338 other upstream 1060986 16345701 ~ 16460928 (-)
ptpdc1 NA other upstream 1284908 16569623 ~ 16599317 (-)
cass4 NA other upstream 1549135 16833850 ~ 16869461 (-)

Expression


Co-expression Network