LOC103042686 (LOC103042686,LOC108424612,LOC108255211,LOC105895941,LOC104930306)


Basic Information

Item Value
gene id LOC103042686
gene name LOC103042686,LOC108424612,LOC108255211,LOC105895941,LOC104930306
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 15073621 ~ 15087689 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007248321.3
CCGTTCAGCTCTGGCCGCTCTCTCTGTAGCAGCTGAGCTCCGGCTGCTCCGAGTGCCATATTGTCTCCTAGTCCGAAAAATAACCCGTTTTTACGGCTGAGGCGAGGAGGAGAGCGCCGCCGGTCCTCTGAGGAAGAGGTTTCAGCTGATATAGTTCTACAGGGAGCTGTTTAGAGGTGCTGCTGTCCCCTGTGGTCCCCTGTGGCCCCCTGCAGACCTCTCCCTACCTCTGCCAAGCTGTCGGACATGTCGGGACCGGTACCGAGTCGGGCCCGCGTTTACACAGAGGTGAACACACACCGGCCCAGGGAGTACTGGGATTATGAGTCCCACGTCGTTGAGTGGGGAAATCAGGATGACTTCCAGCTAGTCCGTAAATTGGGACGAGGAAAGTACAGTGAAGTGTTTGAGGCGATCAACATCACAAACAATGAGAAGGTGGTGGTGAAAATTCTCAAGCctgtaaagaagaagaaaataaagcGCGAGATAAAGATCCTGGAGAATCTGCGTGGAGGACCCAATATCATCTCCCTTATAGATATTGTCAAAGACCCAGTGTCCCGAACACCTGCCTTGGTTTTTGAACATGTGAACAACACTGACTTTAAGCAATTGTACCAGACACTGACAGATTACGACATTCGATTCTACATGTATGAAATCCTGAAGGCTCTTGATTACTGCCACAGCATGGGCATAATGCACCGGGATGTGAAACCGCACAATGTCATGATCGATCATGAACACAGGAAgTTGCGTCTCATTGATTGGGGTCTGGCTGAGTTTTACCACCCGGGGCAGGAGTACAATGTCCGGGTGGCTTCTCGCTACTTCAAGGGACCGGAGCTTCTGGTTGACTATCAgATGTATGACTACAGTCTGGACATGTGGAGTCTTGGCTGCATGTTGGCCAGCATGATCTTTAGGAAGGAGCCCTTTTTCCACGGTCATGATAACTATGACCAGTTGGTCAGAATAGCCAAAGTCCTTGGAACTGAAGACCTCTATGATTACATCGACAAATACAACATAGAACTTGAACCACGCTTCAATGATATTCTAGGAAGGCATTCCCGTAAGCGATGGGAGCGTTTTGTGCACAGCGAGAACCAGCACCTGGTTAGTCCTGAGGCTCTAGACTTTCTGGATAAGCTGCTGCGGTATGACCATCAGGCCAGACTGACTGCGCGAGAGGCCATGGAGCACCCTTACTTCTATCCTGTTGTAAAGGACCAGTCTCGGATGGTGGGCTCTACTAATGTGCCTGCAGCGAACACTGCAGTGAGCGCAGCCAGTATGATCACAGGTATCGCCGCACTTCCAGCCTCCACAGCCCTCGGCCCACTGGCGGGTTCTCCCGTCCTCTCAGCTGCCAACAACCTGAGTGCCCCGGTGCCGGCTGCCGCGGGCGTCCCTCAGTGATGCCGTTTCGTGCCTGTTTCCTCACCTCACCGCAGCCTGGGACCAGGTGATGAGTGAATGCCAGTTCGCCAGTCCACACCCACCATCTCCTGGCTCAGTCCTGTGGAGACCTCTGGGACGATGTTTTTTGAAAGGTGTCCCAAAACCACACCCCCTTCAAACCCCAACCAAACTCCACCCAACCACCCCAACCAAACTGAACCCCACCCACCCTAGTAATCTTCACCTCAAGTTAAACGAACTGTGTACCTGTTTAACAGTTTACTTGACCACATGAACCGTTCGGACTACTGTGTGCGTGCTCGTGTGCGTGATGCATACAGATATTTCGTTCTTGAGGCAAATTGGGTGCTGAAGTGTAACGTGGGCCACGAGACTTCACTCGTTGTTCCAAAAGCATTAGTcgcactaataataataataataataatattaataatgatgattatgatgatacTGATGTTAAGCACATTTTCCCACCATGACCTACAAAGTAGCCAAGCAACCAATCAACACGAGCATGCTTAGCTTTTACTTTAGAGAGGGAAGACGGAGCGCTTTGGACCAAATGGAGGAGCACACTGCGTCATACTTTCACGTTCAGATGCATTAAGTGTTTAGAAGTGACATAATGTTGATCAGTTGGatcagtttacagtgttaatatacacagatcaagcataacattatgaccatgtccttgtttctacactcgttaaccttttttgtttgtttagcgTTTAGGTGGTgggttattctcagcactgcagtgacactagTTGATATTAGTGTAAAGAACCCCTGTATGTGCTGTATGCGTCACAGACCTTTcaaaagctgtgtaaagttcTTTACAGCACCCTCTGTTCACTTTAACTCGTTAATTTCCTAAGTGACAGTGAACATACTGAAAGCATCACAGGACGGTGTGTGAATGGGTTCAttcatctgaccttatttacagagaCTTTACTCCTTTTAAAATGAAACTAACGCTTTATTTGCTTCTACAGATCTGTTTACAACAATTTAACCATGCCTGCCTGCAATAGGAAACAAACATGGAACATGAACTGTTCACTGAATTTCTTATTCAATTTTGAAATCGGTATCAGTATTCAAAAATGGCTCTCTGCTCTTATGGGTTGAACACCTCAATGTCACTGCAGGACAGAcaatagtccaccaacagcaTCCTTTGGGCACAGATAAAGTACTAGACGACGGCACAAACTGTTCAACAGATtgagagcttctgtctctgactttactttagcTAAAAGgttaacacctcatacaccaccatgcCACTGCACTCTCTTAGAGGTGCTGAGAATTACCCATCACGCAAATATAGCTCCTCTGTGGTGggccggggggggggggccaTACCATTTGAAGAACAGTCGGAAAGGAGAAGTATTTTGAACTACAGCGTTTCCTGAATGATCAGTGTAGctgcaaaaatgtataatgggtgtagaaagaaaaaaggtgTTAACATTATACTTGATTGGCGTAATATACAAgacaaagatgaaaaaaaaaaaaacagatccttGATCAGCACATTTTTCCGCCTTTGACAAGTCCTGATCGTTCTGGTGCTGTACCTCTGCAGTCGTGTTGCATTTGACAACACTCGACTTTCATTAGTACTCATGACCTTAACTCCGCATCATGTATGGAGATGTTGATATGGCATAATCTCTTAACAGCTTAATTTGGAGCGTTGGAAGGGGCGGtccatttaacattaatatgAATTGGGTCTGTCGCGATAAAGACGTTATCAACTTAACGTACAATATATGAATTATACCTATCCTAGACTATTATTGATTAAACGTTTATTGTCCTAAAAAgtgtgtaattgcattattatgctattatactgtattaccATTATATTAGTtgtataaaatgattttaaaatgactatcgtttatagcaaaataaattTTTGCAACAAGCTTAGTCCTGATGTTTAGaaatgttggtgtttgttggagaacgTGTTCTGGGCTGGTGAATCTGGTCTCAGATGGTTCTGAACTGAGATCGTTTGGCATGGTTCCAGTCTCCAGTAGCAGGAAAGAGTTCTTAGTCTGTTCTCCACGTTCTgcaatatttaatttcttttaccACAGCAGTTCCTGACCATGTGATCAGTTTCAGTTCCCCATTTGGTGCGACATCTCTCGGACTTCTGAtagctaaatattttatttttggaattAGAGTTCTGAATTATggatatttgtttatttcagtacTGATGTACAACCCTGatctaaatatatgtaaatgaatttCCCCATGGCGAGCCGATTGGACCTGAAGAAATTCATGCATCCTCCTGAAAATTACAGTACGAGTCTTAAACATGGTTGTACATATGTGTATGTCCTAATGTAGATGAGTAGTATTTCAGgatatttgtgtaaataaacGTGTTTTATTTATCA

Function

NR:

description
casein kinase II subunit alpha

GO: NA

KEGG:

id description
K03097 CSNK2A; casein kinase II subunit alpha

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007248321.3 True 3893 mRNA 0.44 13 15073621 15087689

Neighbor

gene id symbol gene type direction distance location
tp53rk tp53rk coding downstream 12533 15056169 ~ 15061088 (-)
LOC103021615 NA coding downstream 19444 15041675 ~ 15054177 (-)
fndc11 NA coding downstream 40560 15032273 ~ 15033061 (-)
LOC103047892 LOC108424570 coding downstream 88726 14973578 ~ 14984895 (-)
LOC111195383 LOC108424608 coding downstream 118202 14954137 ~ 14955419 (-)
LOC103044311 ube2v1,LOC107572061,LOC105022328,LOC106572481,LOC107683645,LOC103044311,LOC108425074 coding upstream 2536 15090225 ~ 15096142 (-)
LOC103042998 ptk6,LOC108255075,LOC103372356 coding upstream 12786 15100475 ~ 15130469 (-)
LOC107197607 ptk6,LOC108231632 coding upstream 47086 15134775 ~ 15162761 (-)
LOC111195446 kaznb,LOC108424680,LOC107749453,LOC107685722,LOC105028825 coding upstream 149293 15236982 ~ 15282579 (-)
LOC103025355 NA coding upstream 208970 15296659 ~ 15305207 (-)
G189951 NA non-coding downstream 32379 15039981 ~ 15041242 (-)
G189867 LOC108424607 non-coding downstream 159556 14906176 ~ 14914065 (-)
G189852 NA non-coding downstream 205882 14866421 ~ 14867739 (-)
G189846 NA non-coding downstream 229378 14842576 ~ 14844243 (-)
G189845 ankrd52 non-coding downstream 243315 14825835 ~ 14830306 (-)
G189956 NA non-coding upstream 14039 15101728 ~ 15135426 (-)
G189987 NA non-coding upstream 110737 15198426 ~ 15202766 (-)
G190001 NA non-coding upstream 121928 15209617 ~ 15284715 (-)
G190004 NA non-coding upstream 127949 15215638 ~ 15217350 (-)
G190171 NA non-coding upstream 265748 15353437 ~ 15354632 (-)
tsen2 NA other downstream 1996879 13062799 ~ 13076742 (-)
LOC111195455 NA other downstream 2359589 12612611 ~ 12714032 (-)
G189335 psma5,LOC107685984 other downstream 2454055 12614912 ~ 12619566 (-)
mapkapk3 mapkapk3,LOC102784126,LOC107384936,LOC101473327,LOC102305022,LOC102199310,LOC106525176 other downstream 2678089 12298049 ~ 12395532 (-)
eogt eogt,LOC107729408 other downstream 2895011 12160542 ~ 12178610 (-)
LOC103024926 dynlrb1,LOC106565026 other upstream 230954 15318643 ~ 15322175 (-)
LOC103026676 LOC108424672,LOC108254855,LOC107691347,LOC107749448,LOC107685659,LOC107551122,LOC106582641 other upstream 321518 15409207 ~ 15466584 (-)
G190405 fbln2,LOC108424659,LOC107727849,LOC107691338 other upstream 1258012 16345701 ~ 16460928 (-)
ptpdc1 NA other upstream 1481934 16569623 ~ 16599317 (-)
cass4 NA other upstream 1746161 16833850 ~ 16869461 (-)

Expression


Co-expression Network