RNA id: XM_007248321.3


Basic Information

Item Value
RNA id XM_007248321.3
length 3893
RNA type mRNA
GC content 0.44
exon number 13
gene id LOC103042686
representative True

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 15073621 ~ 15087689 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CCGTTCAGCTCTGGCCGCTCTCTCTGTAGCAGCTGAGCTCCGGCTGCTCCGAGTGCCATATTGTCTCCTAGTCCGAAAAATAACCCGTTTTTACGGCTGAGGCGAGGAGGAGAGCGCCGCCGGTCCTCTGAGGAAGAGGTTTCAGCTGATATAGTTCTACAGGGAGCTGTTTAGAGGTGCTGCTGTCCCCTGTGGTCCCCTGTGGCCCCCTGCAGACCTCTCCCTACCTCTGCCAAGCTGTCGGACATGTCGGGACCGGTACCGAGTCGGGCCCGCGTTTACACAGAGGTGAACACACACCGGCCCAGGGAGTACTGGGATTATGAGTCCCACGTCGTTGAGTGGGGAAATCAGGATGACTTCCAGCTAGTCCGTAAATTGGGACGAGGAAAGTACAGTGAAGTGTTTGAGGCGATCAACATCACAAACAATGAGAAGGTGGTGGTGAAAATTCTCAAGCctgtaaagaagaagaaaataaagcGCGAGATAAAGATCCTGGAGAATCTGCGTGGAGGACCCAATATCATCTCCCTTATAGATATTGTCAAAGACCCAGTGTCCCGAACACCTGCCTTGGTTTTTGAACATGTGAACAACACTGACTTTAAGCAATTGTACCAGACACTGACAGATTACGACATTCGATTCTACATGTATGAAATCCTGAAGGCTCTTGATTACTGCCACAGCATGGGCATAATGCACCGGGATGTGAAACCGCACAATGTCATGATCGATCATGAACACAGGAAgTTGCGTCTCATTGATTGGGGTCTGGCTGAGTTTTACCACCCGGGGCAGGAGTACAATGTCCGGGTGGCTTCTCGCTACTTCAAGGGACCGGAGCTTCTGGTTGACTATCAgATGTATGACTACAGTCTGGACATGTGGAGTCTTGGCTGCATGTTGGCCAGCATGATCTTTAGGAAGGAGCCCTTTTTCCACGGTCATGATAACTATGACCAGTTGGTCAGAATAGCCAAAGTCCTTGGAACTGAAGACCTCTATGATTACATCGACAAATACAACATAGAACTTGAACCACGCTTCAATGATATTCTAGGAAGGCATTCCCGTAAGCGATGGGAGCGTTTTGTGCACAGCGAGAACCAGCACCTGGTTAGTCCTGAGGCTCTAGACTTTCTGGATAAGCTGCTGCGGTATGACCATCAGGCCAGACTGACTGCGCGAGAGGCCATGGAGCACCCTTACTTCTATCCTGTTGTAAAGGACCAGTCTCGGATGGTGGGCTCTACTAATGTGCCTGCAGCGAACACTGCAGTGAGCGCAGCCAGTATGATCACAGGTATCGCCGCACTTCCAGCCTCCACAGCCCTCGGCCCACTGGCGGGTTCTCCCGTCCTCTCAGCTGCCAACAACCTGAGTGCCCCGGTGCCGGCTGCCGCGGGCGTCCCTCAGTGATGCCGTTTCGTGCCTGTTTCCTCACCTCACCGCAGCCTGGGACCAGGTGATGAGTGAATGCCAGTTCGCCAGTCCACACCCACCATCTCCTGGCTCAGTCCTGTGGAGACCTCTGGGACGATGTTTTTTGAAAGGTGTCCCAAAACCACACCCCCTTCAAACCCCAACCAAACTCCACCCAACCACCCCAACCAAACTGAACCCCACCCACCCTAGTAATCTTCACCTCAAGTTAAACGAACTGTGTACCTGTTTAACAGTTTACTTGACCACATGAACCGTTCGGACTACTGTGTGCGTGCTCGTGTGCGTGATGCATACAGATATTTCGTTCTTGAGGCAAATTGGGTGCTGAAGTGTAACGTGGGCCACGAGACTTCACTCGTTGTTCCAAAAGCATTAGTcgcactaataataataataataataatattaataatgatgattatgatgatacTGATGTTAAGCACATTTTCCCACCATGACCTACAAAGTAGCCAAGCAACCAATCAACACGAGCATGCTTAGCTTTTACTTTAGAGAGGGAAGACGGAGCGCTTTGGACCAAATGGAGGAGCACACTGCGTCATACTTTCACGTTCAGATGCATTAAGTGTTTAGAAGTGACATAATGTTGATCAGTTGGatcagtttacagtgttaatatacacagatcaagcataacattatgaccatgtccttgtttctacactcgttaaccttttttgtttgtttagcgTTTAGGTGGTgggttattctcagcactgcagtgacactagTTGATATTAGTGTAAAGAACCCCTGTATGTGCTGTATGCGTCACAGACCTTTcaaaagctgtgtaaagttcTTTACAGCACCCTCTGTTCACTTTAACTCGTTAATTTCCTAAGTGACAGTGAACATACTGAAAGCATCACAGGACGGTGTGTGAATGGGTTCAttcatctgaccttatttacagagaCTTTACTCCTTTTAAAATGAAACTAACGCTTTATTTGCTTCTACAGATCTGTTTACAACAATTTAACCATGCCTGCCTGCAATAGGAAACAAACATGGAACATGAACTGTTCACTGAATTTCTTATTCAATTTTGAAATCGGTATCAGTATTCAAAAATGGCTCTCTGCTCTTATGGGTTGAACACCTCAATGTCACTGCAGGACAGAcaatagtccaccaacagcaTCCTTTGGGCACAGATAAAGTACTAGACGACGGCACAAACTGTTCAACAGATtgagagcttctgtctctgactttactttagcTAAAAGgttaacacctcatacaccaccatgcCACTGCACTCTCTTAGAGGTGCTGAGAATTACCCATCACGCAAATATAGCTCCTCTGTGGTGggccggggggggggggccaTACCATTTGAAGAACAGTCGGAAAGGAGAAGTATTTTGAACTACAGCGTTTCCTGAATGATCAGTGTAGctgcaaaaatgtataatgggtgtagaaagaaaaaaggtgTTAACATTATACTTGATTGGCGTAATATACAAgacaaagatgaaaaaaaaaaaaacagatccttGATCAGCACATTTTTCCGCCTTTGACAAGTCCTGATCGTTCTGGTGCTGTACCTCTGCAGTCGTGTTGCATTTGACAACACTCGACTTTCATTAGTACTCATGACCTTAACTCCGCATCATGTATGGAGATGTTGATATGGCATAATCTCTTAACAGCTTAATTTGGAGCGTTGGAAGGGGCGGtccatttaacattaatatgAATTGGGTCTGTCGCGATAAAGACGTTATCAACTTAACGTACAATATATGAATTATACCTATCCTAGACTATTATTGATTAAACGTTTATTGTCCTAAAAAgtgtgtaattgcattattatgctattatactgtattaccATTATATTAGTtgtataaaatgattttaaaatgactatcgtttatagcaaaataaattTTTGCAACAAGCTTAGTCCTGATGTTTAGaaatgttggtgtttgttggagaacgTGTTCTGGGCTGGTGAATCTGGTCTCAGATGGTTCTGAACTGAGATCGTTTGGCATGGTTCCAGTCTCCAGTAGCAGGAAAGAGTTCTTAGTCTGTTCTCCACGTTCTgcaatatttaatttcttttaccACAGCAGTTCCTGACCATGTGATCAGTTTCAGTTCCCCATTTGGTGCGACATCTCTCGGACTTCTGAtagctaaatattttatttttggaattAGAGTTCTGAATTATggatatttgtttatttcagtacTGATGTACAACCCTGatctaaatatatgtaaatgaatttCCCCATGGCGAGCCGATTGGACCTGAAGAAATTCATGCATCCTCCTGAAAATTACAGTACGAGTCTTAAACATGGTTGTACATATGTGTATGTCCTAATGTAGATGAGTAGTATTTCAGgatatttgtgtaaataaacGTGTTTTATTTATCA

Function

GO: NA

KEGG:

id description
K03097 CSNK2A; casein kinase II subunit alpha

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU257499 lncRNA downstream 32379 15039981 ~ 15041242 (-) True G189951
TU257393 lncRNA downstream 159556 14906176 ~ 14914065 (-) True G189867
TU257378 lncRNA downstream 205882 14866421 ~ 14867739 (-) True G189852
TU257372 lncRNA downstream 229378 14842576 ~ 14844243 (-) True G189846
TU257371 lncRNA downstream 243315 14825835 ~ 14830306 (-) True G189845
TU257512 lncRNA upstream 14039 15101728 ~ 15135426 (-) True G189956
TU257549 lncRNA upstream 110737 15198426 ~ 15202766 (-) True G189987
TU257566 lncRNA upstream 121928 15209617 ~ 15284715 (-) True G190001
TU257569 lncRNA upstream 127949 15215638 ~ 15217350 (-) True G190004
TU257794 lncRNA upstream 265748 15353437 ~ 15354632 (-) True G190171
XM_007248319.3 mRNA downstream 12533 15056169 ~ 15061088 (-) True tp53rk
XM_022682421.1 mRNA downstream 19444 15041675 ~ 15054177 (-) True LOC103021615
XM_022682833.1 mRNA downstream 40560 15032273 ~ 15033061 (-) True fndc11
XM_007248429.2 mRNA downstream 88726 14973578 ~ 14984895 (-) True LOC103047892
XM_022682438.1 mRNA downstream 118202 14954137 ~ 14955419 (-) True LOC111195383
XM_007248328.3 mRNA upstream 2536 15090225 ~ 15096142 (-) True LOC103044311
XM_022682423.1 mRNA upstream 12786 15100475 ~ 15130464 (-) False LOC103042998
XM_015605608.2 mRNA upstream 12786 15100475 ~ 15130464 (-) False LOC103042998
XM_022682425.1 mRNA upstream 12786 15100475 ~ 15130464 (-) False LOC103042998
XM_022682422.1 mRNA upstream 12786 15100475 ~ 15130464 (-) True LOC103042998
XR_002651608.1 other downstream 1997105 13062935 ~ 13076516 (-) False tsen2
TU256647 other downstream 2454055 12614912 ~ 12619566 (-) True G189335
TU256382 other downstream 2728239 12332545 ~ 12345382 (-) False mapkapk3
TU256229 other downstream 3029328 12043913 ~ 12044293 (-) True G189055
TU256039 other downstream 4082227 10990817 ~ 10991394 (-) True G188898
TU257791 other upstream 230955 15318644 ~ 15322171 (-) False LOC103024926
TU257808 other upstream 343978 15431667 ~ 15457265 (-) False LOC103026676
TU258141 other upstream 1315102 16402791 ~ 16460928 (-) True G190405
XR_002651612.1 other upstream 1746161 16833850 ~ 16869461 (-) False cass4
TU258706 other upstream 2100976 17188665 ~ 17193747 (-) False irf6

Expression Profile