LOC103047892 (LOC108424570)


Basic Information

Item Value
gene id LOC103047892
gene name LOC108424570
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 14973578 ~ 14984895 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007248429.2
aaaatcctgaaaattatcaggggtgcccaaacttttccaTACAACTGTAATTCCACAGGTGGTGGACATTGGAATTGTATCAAATTGGCCGAAATTAAGAAATGTGTCATAGCAAAAATTTCagccatattgtccagccccGGTATGAAAAGAAGGACATGTTACTAGCCAGTAAAGGCTATTCGGCTTTAACACGTAAAAGTGACacacaaattaacaaaaaggccaataaaaatgataaaaaacgaGCACTATCAGACTCTTGGAGACCAGAGAGACCGGGTTCAGTGCGGGGACTGATTCAGTGACGACTCTTTGCGTCACGTTAGTTTAGAAGGCGAGGTTGGATTTAGGCCTATCATCACAGACACAGGAAGTGTCTAGACCAGACTTGTTAAGTGTGGGTGTGACCGCAGTGATTTTAAGGGAAATAAGAGCAGGAGAAGCTGAAGAGAGGCATGTGATTATCAAATGAGTGATGGTAATAGAATGGTTCTTGGACTGGATGTGCAGTTTGGTTCTGGGGTAAACATCTAAAGATCTTACAGAAGCGTATTGTTTATTGTACAGCATTGCTCTAAAATATGCTTTTGTTTAatatgaaatacatttattgtaaATTGTCAGAAAATGGGTTGTATATTACGTTCAGTGTAAACACTACCGTGTCACTGTGGGTAAGTGTCAGTCGTGCTGTTTATTTCTGTACCGTCTGAGCTTATAAATCACAACGACAGGCAGTTTAAACAAGCAGAGACTCACTAAAGATCTGTTAAAAATGTGCAGTATATGACTTAGAAAGTATACACAACATTCCATACAAGAAAAATCACACCAATAATGACTTTGTattggtagaaaaaaaaaatcatgatcatGCAAAAAAATTGTCATCATGTCAGAAACGTGAGCAAGGCAAAAAAATGGatcatgtaaaaaatgtttgatgacattaaaaacatgattatgTGATGTGATTCTGTCACAATCATATTGCTAAAATGTAATAACTTGAAAAATAGAGTGAAAAAGTCTTAACATGATAGAAGGATCACATGTGATTACATGGCACATTATACTACATGTGGTCTTATGTGGAAAAGTGTAATCatgcacaaaatatttttttgggaatCATATTTTGTGGTAAtataactgtgtgaaaatgtaattgTGTGGGAACATGTTCATGTGTGGAAATGTTGGTTGCTTGGAAATGTGATTATATGGAAATATGACTGTGTGGGAACGTAATTGTGTGGAAATGTGAATGTGTGGGAATGTGGTTGCTTGGAAatgtaattgtgtgtaaatgtgttaatgtgtgaaaatgtgatttTGTGGAAATGTGGTTGCTTGAAATTTGATTGCATGGGAATATTATTATGTGGGATTGTGTTCATGTGTGGAAATGTTGCACACCTGTGGTCACATGTTATTGTGTGGTattatgtgtgtttattagtgATTTCTGTTCCTTTAAATCATGCTCTCTGGGTTCAGTGAAGTGAGTTCTGAATCAGAGCTGCACTGCAGCTGAACTGTAACTGGTTCGGAAAGCATTTCTCTGTGAGTTCTCCGGGTTGTTACTGTTGGAAAGCTGCTGAttgatgtgtgtgatgtgtaaaGTCACGGTCTGGTGCTCAGGCCTCCTTCAGTAACTGCGAGAAGCTGGAAACGGACAATCACAGTCCGTCTGCAGAAacgtgcatatatatataaagatgtgTGGAGATATGTGGAGATGTACGTATGGCATGCAGCAGATCTGTGTACGTTCCATCTGTTCCTGCAGCGTTTGTTTATCTAGAACAATGGAACCGTCTTATTGACACTGCTATTTTTAGAGTTTAACCAGACTAACCGTGTTTTTGTGTGGATTTATAAAGGCTGTGGTCTCAGGACGTGTGGAAGTGGAGGTTTGGCCGCTCTGGAATTGGAAGTATTTCTGATTCTGATCCAGATTCTATTTGCTCTTTCCGCCTCTGACATCAGCGGCTGGCTGTATAAATGCTCGGGCCGGAGGCGGGCAGGGCACTAACGCTGACACTTAATGGAATCTCGGACGTCTCACATAGGAGGCAAATTTGGGCTCcaggatgaagagagagagtgaagcaGCTGTTATATCCCTTGCCCTCCAAATCTGCCTTCTCACACAGGTGGTGTGCCAGCTCTGCGATGGACCCTGCCACTGCCCCTCCCCTCCTACCTGCCCAGTAGGCGTGGCCCTGGTGCTGGATGGGTGCAGGTGTTGTCAGATGTGTGCCAGGCAGGAGGGGGAGCCTTGCACGGAGAGGGAGCTCTGTGACGGGCGGCAGGGCTTGCAGTGTGACTACAGCGCCAGCTTCCCGGGTGGGCCGGGCGAGTGTGTCAGGCAGAACGTGCTGGGCTGTGAGCTGGATGGCGTGAGGTATGAAGAGGGTCAGTCCTTCCAGCCCACATGCATGCAGCTGTGCCACTGTGTGGGCGGCGGCATCACATGTGTCCCGCTCTGCAACGAGGACTTGAACCTGCCCATGGCCAACTGCCCTAACCCGAGACTGGCACAGCTACCCGGCCGGTGCTGCAGGGAGTGGGTGTGTGATGGCCTGGACAACAGCGTCCTGCTGGAGACCACTTCAGCTGACCGAGGCGCAAGGTCGTGGCAGGACGTTTCGGCGTCCAGCGGCAGCCCATGGTCCAACTGCGTGGAGCAGATCACAGAGTGGAGCGCATGCTCCCGCAGCTGCGGACCAGGTGTCTCCACCCGCATGTCAAACAGGAACTGGGCCTGCCGcccacaaacacagacacgaCTGTGCCAGGTCAGGCCCTGCCACTTGGCCCCCTCGGCAGCCGCCAACCGAGTCCAGACGGGAACGGGCACGTGTGAGAGCAGCTACCGGGCGCCGCTCCCCGTCCGGCTGGAACACCAGGGCTGCCACAGTACCCGCTCCTACAGACCCCTGTACTGCGGCACCTGCACCGACACCCGCTGCTGCACCCCCCACCGGACCAGAACCGCTCACACGGCCTTCCGCTGCCCTCAGGGAGGCCTCGTCCAGCACAGGGTCATGATCATCGAGACCTGCGCCTGCCACTACCACTGCCCTCACCTGCCACTGCCCAGCGCCAGGAGGGCCAGATCCTGGCTGTAGATGGAGCGATGGATGATGGTTGTGATTACAGTAATATACTCATATCTGGGATATGGGTTCAAAATAGCTACTCCTTATACtccttattaaccccttatagCCTGCGAGTCTGTATGTGGGCCTACACTGGTTCCTCAAGCTAGTACCATACTCTACCATACATATCATATATGAACATGCAATAGGGGTCAAGAGGTTaagcattttaaaatcagtctGAAATACTATGCTACTCGATTTACActgttacaaaaataaatgcaaaaataataatacatttttatagacTGTATTTGgcagaaatatatacatacata

Function

NR:

description
PREDICTED: WNT1-inducible-signaling pathway protein 2-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007248429.2 True 3457 mRNA 0.47 6 14973578 14984895

Neighbor

gene id symbol gene type direction distance location
LOC111195383 LOC108424608 coding downstream 18159 14954137 ~ 14955419 (-)
LOC103040538 si:ch73-190f16.2,nabp2,LOC108424604,LOC107557546,LOC108255000,LOC107572067 coding downstream 117192 14847122 ~ 14856386 (-)
LOC103039903 LOC103039903,LOC108431517,LOC108255002,LOC107697969,LOC107598614,LOC107715030,LOC107671896,LOC102210977 coding downstream 177827 14786322 ~ 14795751 (-)
LOC103039087 NA coding downstream 195237 14767313 ~ 14778341 (-)
LOC103038772 NA coding downstream 209223 14754376 ~ 14764355 (-)
fndc11 NA coding upstream 47378 15032273 ~ 15033061 (-)
LOC103021615 NA coding upstream 56780 15041675 ~ 15054177 (-)
tp53rk tp53rk coding upstream 71274 15056169 ~ 15061088 (-)
LOC103042686 LOC103042686,LOC108424612,LOC108255211,LOC105895941,LOC104930306 coding upstream 88726 15073621 ~ 15087689 (-)
LOC103044311 ube2v1,LOC107572061,LOC105022328,LOC106572481,LOC107683645,LOC103044311,LOC108425074 coding upstream 105330 15090225 ~ 15096142 (-)
G189867 LOC108424607 non-coding downstream 59513 14906176 ~ 14914065 (-)
G189852 NA non-coding downstream 105839 14866421 ~ 14867739 (-)
G189846 NA non-coding downstream 129335 14842576 ~ 14844243 (-)
G189845 ankrd52 non-coding downstream 143272 14825835 ~ 14830306 (-)
G189841 NA non-coding downstream 158547 14812998 ~ 14815031 (-)
G189951 NA non-coding upstream 55086 15039981 ~ 15041242 (-)
G189958 NA non-coding upstream 75061 15059956 ~ 15197059 (-)
G189956 NA non-coding upstream 116833 15101728 ~ 15135426 (-)
G189987 NA non-coding upstream 213531 15198426 ~ 15202766 (-)
G190001 NA non-coding upstream 224722 15209617 ~ 15284715 (-)
tsen2 NA other downstream 1896836 13062799 ~ 13076742 (-)
LOC111195455 NA other downstream 2259546 12612611 ~ 12714032 (-)
G189335 psma5,LOC107685984 other downstream 2354012 12614912 ~ 12619566 (-)
mapkapk3 mapkapk3,LOC102784126,LOC107384936,LOC101473327,LOC102305022,LOC102199310,LOC106525176 other downstream 2578046 12298049 ~ 12395532 (-)
eogt eogt,LOC107729408 other downstream 2794968 12160542 ~ 12178610 (-)
LOC103024926 dynlrb1,LOC106565026 other upstream 333748 15318643 ~ 15322175 (-)
LOC103026676 LOC108424672,LOC108254855,LOC107691347,LOC107749448,LOC107685659,LOC107551122,LOC106582641 other upstream 424312 15409207 ~ 15466584 (-)
G190405 fbln2,LOC108424659,LOC107727849,LOC107691338 other upstream 1360806 16345701 ~ 16460928 (-)
ptpdc1 NA other upstream 1584728 16569623 ~ 16599317 (-)
cass4 NA other upstream 1848955 16833850 ~ 16869461 (-)

Expression


Co-expression Network