AMCG00020553


Basic Information

Item Value
gene id AMCG00020553
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 24622544 ~ 24630704 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00020553
CACCGCCACCCCTGCCTCCTTCGCCATCGATGTTGTCGGCAATGCTCTAGTCCGCACTTGTCAGTGGGTTGTTGTCACGATAAATGTACTGGttttctgttcaatttctcTCGCTTAGTTGTGAACCCGACGCCGGTGAACGCGGAAGCGGCGAGTCCTGTCCTGCACTGTTGTATCCAGCGCGTTATGTACGTGAGCGATGGTTTCCAGTTGTGGATTGAGTCTGCATTTGGTTTACCTGTGTATAGTGTCACTGTGCGTTTGTAGTCCTGTTAAGAAATGCACAGGCGAGTTGTGTCCGCAGCGACCTCCTGTCGTGCTGATCCCAGGTGACCTAGGAAACCAGCTGGAGGCCAAACTTGACAAGCCCAGCGTGGTGCACTATTTCTGCTACAAGAAGACCGATGACTACTTTACCCTGTGGCTCAACCTGGAGCTGCTTGTCCCAGTTGCCATTGATTGCTGGATTGATAACATAAGACTTATCTACAACCGTACAACCAAAACAACTGAAGCCCCGCCTGGGGTGGATGTGAGGGCACCTGGATTTGGACAGACTTACCCCCTGGAGTACCTGGACCCCACTAAGAGAACTGTGGATGAAAACAAGGACTACTTTGTAGCCCTGAAGAAGATGATTGAGGCAATGGCAGAGGAGTTTGGAGGTCCCGTGATGCTCATTGCGCACAGCATGGGCAACATGTACACCCTCTACTTCCTCAACCAGCAGCCGCAGGCATGGAAAGACAAGTACATCAAAGCCTACATTGCCCTCGGACCACCCTGGGGAGGAGTAGTCAAAACTATGCGTGTGGTGGCCTCAGGAGACAACAACCGGATCCCTGTGATCAGCCCTCTGAAGATCCGCTCCCAGCAGCGCTCTGCCGTGAGCACCAACTGGCTCCTGCCCTACAACAACACCTGGCCCTTGGACAAAGTGATTGTGATGACGCCCAAAACCAACTACACCGTGCGGGATTACCAGCGCTTCTACAACGACATCAACTTCCAGGATGGCTGGCTGATGCGGCAGGACACGGAGCCGCTGGTGCGAGACCTCACACCTCCTGGGGTGGCCGTGCACTGTCTGTACGGGAGCGGCGTGGACACCCCCGAGACCTTAGTCTACACTGACTTCCCCGACAAGGAGCCCAAGGTCTTGAATGGCGACGGCGACGGCACCGTGAACCTGATCAGCGCTACCCAGTGCAAGCGCTGGATTGGCTGGCAGAAACAGCCTGTCCAGCTGCTGGAGCTGAGAGGCAATGAGCACATCGACATGCTCCTCAACATGACTACAATCGCCTACATTAAGAAGGTCCTCCTCTCACCCTGAGTTTGAAATTAagaagagatcagatttggGGGAATATTCCAAAGAAGTATCCTGTTCAAATTTCCAATTTAACCCTGTATTCTGACACGCCATTCTGTCATTGGTTACACATTGTGGCAAACGTTGTAGGAGACTCCTGAAGCACACCAATGAGGCCTTGTGAAAAGCTTTCTCCTTGATCTAACCAAGCAAATCAACTGTAAAATTGCCTTATTCATTTTCTCATGTCAGTCAATCCTCCCTGCTTTCTCTTCCTAAGCCATGTCACATGATGCAAAGTTAAGTTCATATATGGGACCGGTCCGTGGTGCAAAAAAGGTTGGGGACCGCTGATTTAGTCCACACTTGATTCCTTCCTTATTCCTTCTCCGTTATGCATGCATAGACATGGTCTTATAACATCCCCTTTTTATTCATGTCCGatctaaagtatttttttagttttataaatgcaaattattgatattaataaaaaaaatctaaattacccAGGATTATCATCATCATGCAGGAATAATAAACTTGGGGGCCCTACACCTTAGTGTCATCAGTAGTCCAACAGCTTGAAGAAGGTTATATATTTAACGCCAATTTCTgcagtttgtaaactttatggaTCTGACCAACATTTCGATGGGGGAGTTTTTGGATCATGAAcgatttatattaattgttaCGAATATTTTGTAAAACGGTTGCCATTTTTATTCTCTTCACTTTGGTGTTTTACAATACTTAAATATTGgttctttgcctttttttgttcTCTGCAACATTCGTGCTATTTTTGGGgcaaaattttaaataatttaaaatgtttgtaagtTTTATggtcttgttgtttttaaataaattgtttaaaaaaaaaaaaaaaaaagaaaacctgtgCAATGTCCTGCAGACCTACTATCGGTCCTTCAGATGGTGTCATATCTTAGAAAAGCAAAACCCAGCTGTTGTGATTTTTCTGGACCTTTTTACAGTACTGAAGATTTCTGTACAATATCATTTTGAAGTGCTGTTGAGATTTGCCAGTCAGGAACATCTTGAGAATctgaaaattacttttaaaatgtctgcgTTTGCATTCTGCCCGAAAAGCCCTTTGTCTATCACTGCGATGGATGTTCTGAATAATAAACTGTTATTGGCCCTGTTCAGTTCACCCCATccacacatgcacaaatatcttctatttataaatatatatatataaattatttcctTGCCTTATCAAAATCTCTAATTTCTGGGGGTAGCTTAGTGTCATTCTTTCAGTTGTAATGTTGCTCTGTATTGCAATATGTCAAAGCTTTGAAACCAGGACTTTAATCGCAGTGCAACCTAATCCCTTTATTCAGGTCTCAAGGAGCACCAAAATATTGCACATCTGTAACTTAAAATACCTTAAATCTCAGCCATttgtaactttaaataaattgtcCATTACATTGAGAAATGTTTGGTTGTACAATATTGACGTTTTTGTCCTAATCTTCTGTGGTGTCATGTACCTATTGTCCGATGTGTATTGGGAAGGGATAATTATGTTGAATGCACCATTTTACACTTCCCTACAGGGGAGTTTTTAAGACTGATTGAATAAGGTGTGCCATTAATACACTGTGCcttgtgtaatttgtattatttttacaatcttttccaataaaacaaaaactagttGGTTTTCTTAATGTTGTGGCTGTAACCCAAAAGGACATGCCCCCGGTAGGCTGTGACTGGGACAAAGCTGTTCATTAAAAGAgtaaaatgtgttcaatttgtGATGCATTCTTACAGcgaataaaaatgtttttttgagaaTGGGGAActgcaacagaaataaaataaccaaactCCCCAGATATCAAA

Function

GO:

id name namespace
GO:0006629 lipid metabolic process biological_process
GO:0008374 O-acyltransferase activity molecular_function

KEGG:

id description
K06129 LYPLA3; lysophospholipase III

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00020553 True 3208 mRNA 0.43 5 24622544 24630704

Neighbor

gene id symbol gene type direction distance location
AMCG00020552 NA coding upstream 2677 24613873 ~ 24619867 (+)
AMCG00020543 NA coding upstream 168944 24447276 ~ 24453600 (+)
AMCG00020537 map1lc3b,LOC107701564,LOC107714047,LOC107654145,LOC107581828 coding upstream 278609 24330886 ~ 24343935 (+)
AMCG00020531 clec3a coding upstream 314384 24304634 ~ 24308160 (+)
AMCG00020533 vat1l,LOC106562097,LOC106587190 coding upstream 351511 24251075 ~ 24271033 (+)
AMCG00020551 NA coding downstream 9094 24639798 ~ 24641669 (+)
AMCG00020556 csnk2a2,LOC106573643 coding downstream 45985 24676689 ~ 24688415 (+)
AMCG00020562 NA coding downstream 75731 24706435 ~ 24707136 (+)
AMCG00020558 NA coding downstream 105270 24735974 ~ 24737900 (+)
AMCG00020557 NA coding downstream 116719 24747423 ~ 24756285 (+)
G64069 NA non-coding upstream 24757 24594130 ~ 24597787 (+)
G64048 NA non-coding upstream 57052 24488904 ~ 24565492 (+)
G64009 NA non-coding upstream 379867 24232739 ~ 24242677 (+)
G63951 NA non-coding upstream 529307 24088514 ~ 24093237 (+)
G63948 kars,LOC107738348,LOC107584690,LOC107679917 non-coding upstream 546069 24075049 ~ 24076475 (+)
G64121 NA non-coding downstream 61293 24691997 ~ 24695554 (+)
G64122 NA non-coding downstream 65898 24696602 ~ 24696809 (+)
G64158 NA non-coding downstream 179260 24809964 ~ 24811811 (+)
G64185 NA non-coding downstream 314557 24945261 ~ 24946210 (+)
G64210 NA non-coding downstream 427465 25058169 ~ 25060329 (+)
G64046 NA other upstream 140430 24478835 ~ 24482114 (+)
AMCG00020529 LOC107090538 other upstream 554087 24033037 ~ 24068457 (+)
G63939 NA other upstream 566952 24051989 ~ 24055592 (+)
G63786 znf821,LOC107747380 other upstream 1547599 23070411 ~ 23074945 (+)
AMCG00020505 NA other upstream 1560395 23053798 ~ 23062149 (+)
AMCG00020572 NA other downstream 431669 25062373 ~ 25076690 (+)
AMCG00020573 NA other downstream 447438 25078142 ~ 25084873 (+)
AMCG00020585 NA other downstream 828392 25459096 ~ 25472886 (+)
G64372 NA other downstream 920207 25550911 ~ 25553320 (+)
AMCG00020603 NA other downstream 1131431 25762135 ~ 25778982 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000115_00726364_00733247 PLA2G15, LYPA3 coding CI01000115 null 725608 ~ 733375 (-)