Gene
RNA
| Item | Value |
|---|---|
| gene id | G63948 |
| gene name | kars,LOC107738348,LOC107584690,LOC107679917 |
| gene type | non-coding |
| species | bowfin (Amia calva) |
| category of species | ecological fish |
| Item | Value |
|---|---|
| chromosome id | CM030127.1 |
| NCBI id | CM030127.1 |
| chromosome length | 42978078 |
| location | 24075049 ~ 24076475 (+) |
| genome version | AmiCal1_2021_bowfin_Genome |
| symbol | description |
|---|---|
| kars | Enables several functions, including ATP binding activity; lysine-tRNA ligase activity; and tRNA binding activity. Involved in several processes, including ERK1 and ERK2 cascade; diadenosine tetraphosphate biosynthetic process; and lysyl-tRNA aminoacylation. Located in cytosol and nucleus. Part of aminoacyl-tRNA synthetase multienzyme complex. Biomarker of sciatic neuropathy. Human ortholog(s) of this gene implicated in Charcot-Marie-Tooth disease recessive intermediate B and autosomal recessive nonsyndromic deafness 89. Orthologous to human KARS1 (lysyl-tRNA synthetase 1). |
| description |
|---|
| PREDICTED: lysine--tRNA ligase-like isoform X2 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU80011 | True | 883 | lncRNA | 0.44 | 3 | 24075049 | 24076475 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| AMCG00020528 | NA | coding | upstream | 12374 | 24057094 ~ 24062675 (+) |
| AMCG00020522 | NA | coding | upstream | 103475 | 23925180 ~ 23971574 (+) |
| AMCG00020520 | NA | coding | upstream | 217246 | 23813512 ~ 23857803 (+) |
| AMCG00020517 | zfhx3 | coding | upstream | 392747 | 23657711 ~ 23682302 (+) |
| AMCG00020519 | zfhx3,LOC105888974,LOC106533552 | coding | upstream | 463903 | 23608590 ~ 23611146 (+) |
| AMCG00020530 | psmd7,LOC107584693,LOC107659147,LOC107553010 | coding | downstream | 83802 | 24160277 ~ 24163714 (+) |
| AMCG00020535 | NA | coding | downstream | 125839 | 24202314 ~ 24210374 (+) |
| AMCG00020536 | NA | coding | downstream | 139596 | 24216071 ~ 24225069 (+) |
| AMCG00020534 | LOC104940465,LOC106520303,LOC103466051 | coding | downstream | 149526 | 24226001 ~ 24232399 (+) |
| AMCG00020532 | NA | coding | downstream | 169066 | 24245541 ~ 24249251 (+) |
| G63947 | NA | non-coding | upstream | 2889 | 24070716 ~ 24072160 (+) |
| G63898 | LOC108433019,LOC103398424 | non-coding | upstream | 175295 | 23898507 ~ 23899754 (+) |
| G63890 | NA | non-coding | upstream | 177294 | 23850350 ~ 23897755 (+) |
| G63789 | NA | non-coding | upstream | 988116 | 23086378 ~ 23086933 (+) |
| G63787 | NA | non-coding | upstream | 997736 | 23076901 ~ 23077313 (+) |
| G63951 | NA | non-coding | downstream | 12039 | 24088514 ~ 24093237 (+) |
| G64009 | NA | non-coding | downstream | 156264 | 24232739 ~ 24242677 (+) |
| G64048 | NA | non-coding | downstream | 412429 | 24488904 ~ 24565492 (+) |
| G64069 | NA | non-coding | downstream | 517655 | 24594130 ~ 24597787 (+) |
| G64121 | NA | non-coding | downstream | 615522 | 24691997 ~ 24695554 (+) |
| AMCG00020529 | LOC107090538 | other | upstream | 6592 | 24033037 ~ 24068457 (+) |
| G63939 | NA | other | upstream | 19457 | 24051989 ~ 24055592 (+) |
| G63786 | znf821,LOC107747380 | other | upstream | 1000104 | 23070411 ~ 23074945 (+) |
| AMCG00020505 | NA | other | upstream | 1012900 | 23053798 ~ 23062149 (+) |
| AMCG00020487 | NA | other | upstream | 1665556 | 22356174 ~ 22409493 (+) |
| G64046 | NA | other | downstream | 402360 | 24478835 ~ 24482114 (+) |
| AMCG00020572 | NA | other | downstream | 985898 | 25062373 ~ 25076690 (+) |
| AMCG00020573 | NA | other | downstream | 1001667 | 25078142 ~ 25084873 (+) |
| AMCG00020585 | NA | other | downstream | 1382621 | 25459096 ~ 25472886 (+) |
| G64372 | NA | other | downstream | 1474436 | 25550911 ~ 25553320 (+) |
