CI01000026_15144573_15146721 (UQCRFS1)


Basic Information

Item Value
gene id CI01000026_15144573_15146721
gene name UQCRFS1
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000026
NCBI id null
chromosome length 17172400
location 15142586 ~ 15146823 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000026_15144573_15146721.mRNA
GCATAAAAACCCCTTGCATCTTTTTATAAACATAAAACGAGTTTTCATTTATTGCTGTCTCCCTGAAGAATTAGAGATCTAGCTGGGACTTTATGTCCCTTTCTAATGAAACTAATAAGCAGGCTTGTGGAAACAGCAAATGTCAAGAGTGGCACAACGGATACAGTATAGAGAACACCCGAGCCAAACTGCATACTCATAGATTAAAAATGTCAATAGAGTTTATTTTCAGTTGACAAAGAAGGAAATGCAGCCTCAAATAGCTGAGACTCAATTGCAGGCAAACCGCATCACATTGATCAAAGCTGATGCTGTGGCAACAGCAGGCAGTAAAATCAGACGTACTTACTGGATTTATTAAAATGGGCTGTGAGAACTTGACAAGCTGTAACCCAGTCAGTGTAGATAAACAGGAACATACAAATGAGATTGCTTCAGGAAATATTCATGGAAACATTCTTTTGTAATAGCCAGGAGTATGCAAATCCAATCTGTAAATGCGACAGAGTGATTTTTGGGTAACACCATGGTAGTGAGTGAAATCTGCCTTAAGGTCTCATTTACAGTTATTCAAAAGAAATTATTGTTTTCTTACTTTTAAGTTGGTCACATTCATTTGCTGCATTGACCAACAGAAATCTGTTTGATTTGAAATGAATTTCTGTGTGCGCTGTTTCATACATCGACACAATTGACAATAGACCCTTTTTTGCCCTGCAGAATGTTGCTGAAATTTTGCGAATGTGGCCGCAGATCACATTCAACATTGCTCTGCAAATTTTCGACAGCGAAATCCAGGCAATATAATTGGAATCCATGCAACCAGGCATTTTGAGTGAGGGCGAAAGTTTTACCAAAACATATTTTACAACAGGTTTAAGTTGGTTGTGCAAATTCATGTTGACCAACAAAAAGCTACTTGGTTTGAAAGTAACTTCAAACTAAACCACACTGAAAGCTCTTCTAAAAACACACAGCTGTGGCCACATTACATCAGTATTATTTTTGCTGCTGCATCTGTGAGACCCTTTTCACAGACTGTGATGACACATTTTAATGGTCATCAGCATAGTAAGTCTTGCAAAGTATATATATATATATATATATATATATATATAATTTATTTATTTATTTTTATTTATTTTTTTAAATGTAGGTACATTTATAACACTATACTTAAAATTGTATTACCTTTTCATCAAATTACAAAAAAAAAAAAAAAGAACCGCTGCTGTGAGGGTGTTTTTAATACAGTGGCTATGGTAAAGTTGACATCTTTCTCGCTTCTGACTGCCGTTATCAATTTCTCTCTATTTTATTTATTTTTTAAATCTTTTTGAAAGTTGTGTGTCTCGCTATTCGAGAACATGGGAACACAAAAGATACATAAAAATAAAAAATACATATAATTAATGTATTCTATCATTCACCGCCATAGAATTTTACCCAACTATGACAACTTAGGCTTCTGAGAAACCCGGGAATGTGAAAAGGGTCTATTCTGCTAAACATTGCTTAAGAACTAGATTGCTTCGCAAACGAATTGTTGTTGGTTTTCAATGTAAAATGGCCCCATGAAAACAGAAGAACTAAACTGTTCTCTCATTGTAAACCATGACTTCCTGGGGCTTATTGCTTTACTAGAAACCAGCAACCCTCTATGGAGGGTTTATTACTATTTCCGTGACACTTCTGGTCCTCCATACATGCAGAGACCAATGTATTCTTTTAAACAGGTTCACCGCATACCATTTTTGTTTGTCCAGCATTTATCCACATTGTTGTGGAATAGAGGTGTGCTAACAATTTCAATTATTTTATTTCAATCATGAAATTACATATGAATCCAAAAGAAGGTAAAACTGTAAAAGGCTTTAGGCGTGACGTCACCCCGTCTCTGAGACGTTGACATCAGGAGCGCGCATGCGTCAGCGCTGTCGGTAGACCAATTCGGGAAGGTCGATCGCAGCTCAGTTAGCTGACAAACATGATGTCCCTTGCTGCTCGTTCGGGGACTTTTTCCCCTTACTTACAAGCTACAAATTATGTCGTGGCAGGTCCATTAAAACCTCTCATACCCGGCGTCGTCATGAAGGCCGATAAACTTTTGACGGACACCAAGAAACCTTTCCTGTGCCGCGAGTCCTTGTCTGGTCAGAGCGCTAAGAGCGGCCTCGCCGTGTCCACCAGCCTCAACGACATCAAGATCCCTGATTTCTCTGACTATCGCCGGCCTGAGGTTTTGGACTCCAAGAAGTCCTCACAAGAGAGCGGCGATACTCGGCGGGCCTTCTCCTATCTGATCACGGGTTCCACCGCTGTGATTGGAGTCTATACAGCCAAGACAATTGTCACACAGTTTGTCTCGTCCATGAGCGCCTCAGCTGACGTGTTGGCTCTGTCCAAGATTGAAATAAAGCTATCAGACATCCCTGAGGGTAAGAACATGACCTTCAAATGGAGAGGGAAGCCCTTGTTTGTGCGCCACAGAACAGAAAAAGAGATTTCTACTGAGGCCAGTGTCAATCTCTCTGAGCTCCGGGACCCCCAGCACGACAAAGACCGTGTTCAGAACCCGACCTGGGTTATTGTCATCGGTGTGTGCACCCATCTGGGCTGCGTGCCCATTGCTAATGCTGGTGACTATGGTGGCTATTACTGCCCGTGCCATGGCTCTCATTACGACGCATCTGGTCGCATTAGGAAAGGCCCTGCTCCACTCAATCTGGAGGTGCCCTACTACGAGTTCCCAGACGATGATACAGTGATTGTAGGATAAAGGACTGTACTATATTAACTATGATCAACACTGAACATCCGCTTTACTTGTTTGATTACATTATCTGCATTAACTTGATGGGTAACAGGTTAATTGTCAGTA

Function

symbol description
uqcrfs1 Predicted to enable oxidoreductase activity. Predicted to be located in mitochondrion and respirasome. Predicted to be integral component of membrane. Predicted to be part of mitochondrial respiratory chain complex III. Is expressed in several structures, including alar plate midbrain region; axis; hatching gland; optic tectum; and polster. Human ortholog(s) of this gene implicated in mitochondrial complex III deficiency. Orthologous to several human genes including UQCRFS1 (ubiquinol-cytochrome c reductase, Rieske iron-sulfur polypeptide 1).

GO:

id name namespace
GO:0006810 transport biological_process

KEGG:

id description
K00411 UQCRFS1, RIP1, petA; ubiquinol-cytochrome c reductase iron-sulfur subunit

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000026_15144573_15146721.mRNA True 2881 mRNA 0.41 2 15142586 15146823

Neighbor

gene id symbol gene type direction distance location
CI01000026_14794982_14800669 CA7 coding upstream 341197 14794982 ~ 14801389 (+)
CI01000026_14747237_14750435 NA coding upstream 392089 14747237 ~ 14750497 (+)
CI01000026_14690064_14690693 CMTM3 coding upstream 451893 14690064 ~ 14690693 (+)
CI01000026_14685877_14686783 CKLF coding upstream 455494 14685846 ~ 14687092 (+)
CI01000026_14677273_14679619 NA coding upstream 462814 14676951 ~ 14679772 (+)
CI01000026_15428529_15431580 POP4 coding downstream 281706 15428529 ~ 15432015 (+)
CI01000026_15434996_15435874 NA coding downstream 287625 15434448 ~ 15436124 (+)
CI01000026_15453381_15456567 NA coding downstream 305895 15452718 ~ 15456573 (+)
CI01000026_15462834_15471168 CCNE1 coding downstream 316011 15462834 ~ 15471307 (+)
CI01000026_15701090_15742400 ZNF536 coding downstream 554267 15701090 ~ 15742400 (+)
G136306 NA non-coding upstream 120258 15022114 ~ 15022328 (+)
G135994 NA non-coding upstream 272675 14869089 ~ 14869911 (+)
G136065 NA non-coding upstream 291969 14850335 ~ 14850617 (+)
G136041 NA non-coding upstream 352034 14790337 ~ 14790552 (+)
G136040 NA non-coding upstream 362748 14779580 ~ 14779838 (+)
G136387 NA non-coding downstream 862 15147685 ~ 15148520 (+)
G136487 NA non-coding downstream 55180 15202003 ~ 15202920 (+)
G136485 NA non-coding downstream 56898 15203721 ~ 15206328 (+)
G136581 NA non-coding downstream 153078 15299901 ~ 15300119 (+)
G136603 NA non-coding downstream 180632 15327455 ~ 15327739 (+)
G133542 NA other upstream 3665679 11476117 ~ 11477544 (+)
CI01000026_11241496_11246081 NA other upstream 3887513 11241496 ~ 11246204 (+)
CI01000026_11075931_11078249 MDK, MDKA other upstream 4063506 11075784 ~ 11079080 (+)
G133192 NA other upstream 4980625 10159819 ~ 10161961 (+)
G132667 NA other upstream 5573426 9568739 ~ 9569160 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_034012 uqcrfs1 coding NC_007118.7 CM002891.2 45400716 ~ 45406089 (+)
bowfin (Amia calva) AMCG00020442 LOC106562006,LOC107565776,LOC105924362,LOC107741896 coding CM030127.1 CM030127.1 19826809 ~ 19832079 (+)