CI01000026_15462834_15471168 (CCNE1)


Basic Information

Item Value
gene id CI01000026_15462834_15471168
gene name CCNE1
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000026
NCBI id null
chromosome length 17172400
location 15462834 ~ 15471307 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000026_15462834_15471168.mRNA
GCTCTCGACACTCAAGAAGGTCACAAGCGTGGATATCATGCCAAGCAAGAAAGTCATTTACAAGATCCAGATGAGGAGACCACAGAGATGACAAGAAAGAAACCATGTGCATCCCAGGCCTGCTGGAATCCTGACACAGGTTACACAAGCCCATGCAGGCGGATCCCCACACCTGATGAAGTAGAGGAACCGGTTGCTGTTGGCAGCATGGGATTCACACAGTACGCCTCAGAAAACATTTTCGTCACCCCCACGCGTTCTACCCCTCTGCCGGCCCTCTGCTGGGCAAGCAAAGATGATGTGTGGAACAACCTGCTTAGAAAAGACAAACTCTACTCGCGAGATACACACGTTATGGAAAGACATCCAAATCTCCAACCCAAAATGAGAGCGATTCTGCTGGATTGGCTAATGGAGGTTTGTGAGGTATACAAGTTACACAGAGAAACGTTTTACTTGGGTCAGGACTACTTTGATCGCTTCATGGCCACACAAGAGAATGTTCTTAAAACAACACTACAGCTTATAGGCATCTCCTGTCTCTTCATCGCTGCCAAAATGGAGGAAATTTACCCTCCTAAGGTGCATCAGTTTGCTTACGTTACTGATGGGGCCTGCACTGAGGATGACATTCTTAGCATGGAGGTTATCATCATGAAGGAGTTGAATTGGAGTTTGAGTCCTTTAACCCCAGTGGCTTGGCTCAACATCTACATGCAGATGGCCTATCTAAAGGAGACTGCTGAAGTTCTCATAGCCCAGTACCCACAGGCTACATTTGTGCAGATTGCAGAGCTCTTGGATCTCTGTATACTGGATGTAAGAAGTCTGGAGTTCTCTTATGGCCTCCTTGCAGCTTCTGCACTCTTCCACTTCTCTTCTCTAGAGCTAGTCATGAAAGTTTCCGGGCTGAAGTGGTGTGATTTGGAGGAGTGTGTGAGATGGATGGTCCCTTTTGCCATGTCGATTCGTGAAGCAGGCAGCTCAGCCCTCAAGACATTCAAAGGAATAGCAGCTGATGACATGCACAATATACAGACCCATGTACAGTACTTGGAATGGCTGGGAAAGGTGCACTCCTATCAGCTAGTGGACATTGAGAGCAGTCAGAGGTCTCCAGTTCCCTCTGGAGTGCTCACACCACCACCCAGCAGTTGCCATTTGGACCAGCAAAATCCTGACAGGTTGTCACGGGCACTCAAGTCTCCACTGCCAGAAAGGACCAGAGAAATCACCAGCTTCAGAAGCTAGGACTCTCATTTTTTTTTTTTATATTTAAGATTTTCTTTTGGTCACTTCCCATGTATTTGTACCAAACTTGACCATTCACTTTTTATAGGTTTGTTTTTTAAATGAGATGCTGCTACATTTCTCTATATCATATGTTTAA

Function

symbol description
ccne1 Enables kinase activity. Predicted to be involved in G1/S transition of mitotic cell cycle and regulation of cyclin-dependent protein serine/threonine kinase activity. Predicted to act upstream of or within cell division and regulation of cell cycle. Predicted to be part of cyclin E1-CDK2 complex. Predicted to be active in centrosome; cytoplasm; and nucleus. Is expressed in anterior axial hypoblast; intestine; nervous system; notochord; and polster. Human ortholog(s) of this gene implicated in breast adenocarcinoma. Orthologous to human CCNE1 (cyclin E1).

NR:

description
G1/S-specific cyclin-E1

GO:

id name namespace
GO:0051726 regulation of cell cycle biological_process

KEGG:

id description
K06626 CCNE; G1/S-specific cyclin-E1

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000026_15462834_15471168.mRNA True 1390 mRNA 0.46 11 15462834 15471307

Neighbor

gene id symbol gene type direction distance location
CI01000026_15453381_15456567 NA coding upstream 6261 15452718 ~ 15456573 (+)
CI01000026_15434996_15435874 NA coding upstream 26710 15434448 ~ 15436124 (+)
CI01000026_15428529_15431580 POP4 coding upstream 30819 15428529 ~ 15432015 (+)
CI01000026_15144573_15146721 UQCRFS1 coding upstream 316011 15142586 ~ 15146823 (+)
CI01000026_14794982_14800669 CA7 coding upstream 661445 14794982 ~ 14801389 (+)
CI01000026_15701090_15742400 ZNF536 coding downstream 229783 15701090 ~ 15742400 (+)
CI01000026_15796823_15797870 NA coding downstream 325516 15796823 ~ 15798627 (+)
CI01000026_15864670_15915098 NA coding downstream 393237 15864544 ~ 15915162 (+)
CI01000026_15963447_15967856 NA coding downstream 491215 15962522 ~ 15967889 (+)
CI01000026_16112803_16120445 NA coding downstream 640974 16112281 ~ 16121033 (+)
G136646 NA non-coding upstream 52446 15409880 ~ 15410388 (+)
G136603 NA non-coding upstream 135095 15327455 ~ 15327739 (+)
G136581 NA non-coding upstream 162715 15299901 ~ 15300119 (+)
G136485 NA non-coding upstream 256506 15203721 ~ 15206328 (+)
G136487 NA non-coding upstream 259914 15202003 ~ 15202920 (+)
G136679 NA non-coding downstream 26844 15498151 ~ 15498389 (+)
G136693 NA non-coding downstream 63364 15534671 ~ 15534893 (+)
G136695 NA non-coding downstream 70799 15542106 ~ 15542476 (+)
G136703 NA non-coding downstream 91253 15562560 ~ 15563121 (+)
G136727 NA non-coding downstream 127172 15598479 ~ 15598703 (+)
G133542 NA other upstream 3985927 11476117 ~ 11477544 (+)
CI01000026_11241496_11246081 NA other upstream 4207761 11241496 ~ 11246204 (+)
CI01000026_11075931_11078249 MDK, MDKA other upstream 4383754 11075784 ~ 11079080 (+)
G133192 NA other upstream 5300873 10159819 ~ 10161961 (+)
G132667 NA other upstream 5893674 9568739 ~ 9569160 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location