CI01000026_15428529_15431580 (POP4)


Basic Information

Item Value
gene id CI01000026_15428529_15431580
gene name POP4
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000026
NCBI id null
chromosome length 17172400
location 15428529 ~ 15432015 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000026_15428529_15431580.mRNA
ATGTGTTGGACTCCCGGATCCCATCAAAGGAAAGCGCTCTGTTGGGAGTTGAGTCTTCAAATAGTACGAAAGCGGAGGCTTTCACCCAAGCGTTCCTGAAAAATAGCTTTCCCCAAATGAAAGATGAAGCTATTGAGACGATGATGTTGCACAAGGCGGTAGTACTGGAATTTAAAAGACCAAAAAAGAAGGGAAAGAAAAGAAAGGCCAAGGGACTGAATGCCAAAGAAAGAAGACGGCTAAAAATATTCCAGCTCAAACCTGAACATCAAAAATATGAACTCTTCTTGCCTCTACATGAGCTATGGAAACAGTACATTGAGGACCTATGCAATGGATTGAAACCAGGAAGCAACCCACAGATGATCCAGCAGAAGCTCTTGAAAGCTGATTTCCATGGTGCAATCTTAACAGTTGTCAGATCAAAATGCCCCTCGTATGTGGGTCTCACTGGCATCTTGGTACAGGAAATGAAGCACATCTTCAAAATCATCACAAAAGAGGACAAACTAAAAGTAATACCGAAGAGGAATAGTGTGTTCAGTGTGGAAATTGGTGATTTTGTAACTCACATCTATGGAAGCACATTTGAACTGCGCTCCAGTGAGCGGTCAGCAAAGAAATTCAAAGTAAAAGGAACTATTGACTTGTAATGGAAAGTCTTAAACATTGTGTCATTTATTTTTAACTGTGGGCTGACACTGGAGCCTGGAAGATTATAAAGAACTGATGCTCAATCATTATGGATTTGTTTTTACTTTATCCTTATGGTCACATAACCGTCTTTTCAAAAATGTGTACAAAAGGAGAAATAATAATATTTTCAATATATACCTTGTATCTGATCAAGCATGAAACTCTATTGGGGCATTTAGGAAAAGTAGTTTAATTGTCCACCAGGGGGAGACCTTTTTTGGGGGGAGGAGATGGGAGGAAAAAATCTTGACCTTGCTTTCTCTCTCTCCTCCCTCTCTCTCTCTCTTTTTAAACAATCCTTGGTACCTGCCACTTCCTTATATTATACAAAACTCTTTGGTTATGACCTAATTTAGTCAACAAGGGTAGTCAGCACTGCAAATGCACTACAA

Function

symbol description
pop4 Predicted to enable ribonuclease P RNA binding activity. Predicted to be involved in rRNA processing. Predicted to act upstream of or within tRNA processing. Predicted to be located in nucleolus. Predicted to be part of ribonuclease MRP complex and ribonuclease P complex. Orthologous to human POP4 (POP4 homolog, ribonuclease P/MRP subunit).

GO:

id name namespace
GO:0030677 ribonuclease P complex cellular_component

KEGG:

id description
K03538 POP4, RPP29; ribonuclease P protein subunit POP4

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000026_15428529_15431580.mRNA True 1088 mRNA 0.40 6 15428529 15432015

Neighbor

gene id symbol gene type direction distance location
CI01000026_15144573_15146721 UQCRFS1 coding upstream 281706 15142586 ~ 15146823 (+)
CI01000026_14794982_14800669 CA7 coding upstream 627140 14794982 ~ 14801389 (+)
CI01000026_14747237_14750435 NA coding upstream 678032 14747237 ~ 14750497 (+)
CI01000026_14690064_14690693 CMTM3 coding upstream 737836 14690064 ~ 14690693 (+)
CI01000026_14685877_14686783 CKLF coding upstream 741437 14685846 ~ 14687092 (+)
CI01000026_15434996_15435874 NA coding downstream 2433 15434448 ~ 15436124 (+)
CI01000026_15453381_15456567 NA coding downstream 20703 15452718 ~ 15456573 (+)
CI01000026_15462834_15471168 CCNE1 coding downstream 30819 15462834 ~ 15471307 (+)
CI01000026_15701090_15742400 ZNF536 coding downstream 269075 15701090 ~ 15742400 (+)
CI01000026_15796823_15797870 NA coding downstream 364808 15796823 ~ 15798627 (+)
G136646 NA non-coding upstream 18141 15409880 ~ 15410388 (+)
G136603 NA non-coding upstream 100790 15327455 ~ 15327739 (+)
G136581 NA non-coding upstream 128410 15299901 ~ 15300119 (+)
G136485 NA non-coding upstream 222201 15203721 ~ 15206328 (+)
G136487 NA non-coding upstream 225609 15202003 ~ 15202920 (+)
G136679 NA non-coding downstream 66136 15498151 ~ 15498389 (+)
G136693 NA non-coding downstream 102656 15534671 ~ 15534893 (+)
G136695 NA non-coding downstream 110091 15542106 ~ 15542476 (+)
G136703 NA non-coding downstream 130545 15562560 ~ 15563121 (+)
G136727 NA non-coding downstream 166464 15598479 ~ 15598703 (+)
G133542 NA other upstream 3951622 11476117 ~ 11477544 (+)
CI01000026_11241496_11246081 NA other upstream 4173456 11241496 ~ 11246204 (+)
CI01000026_11075931_11078249 MDK, MDKA other upstream 4349449 11075784 ~ 11079080 (+)
G133192 NA other upstream 5266568 10159819 ~ 10161961 (+)
G132667 NA other upstream 5859369 9568739 ~ 9569160 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location