CI01000026_15701090_15742400 (ZNF536)


Basic Information

Item Value
gene id CI01000026_15701090_15742400
gene name ZNF536
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000026
NCBI id null
chromosome length 17172400
location 15701090 ~ 15742400 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000026_15701090_15742400.mRNA
TCTGGCCGTGGCCGTGTACGTGAGGAAAACAGGCTTCTTCATGAACTAGAAGAGAGGGCCATTTTACGTGATAAGCAAATGAGGAACAGCTTGCTGCAGCCCTCTCAACCTCTTCCACCCCACTTGGGTATCCAGAGTCACAACCAGCAACAGCCTGGTTCTGCCTGCGGCCTGCTCACTCCAACCAGTATTGGTGGCTCACCTGATGGACTGACCCAGCCGTCTGCCTCACCTAAGCCAGCAGGTACCAACCTGCAAGATGAGCAAGCCCTCAACCCAGCCCAAGGATTCCGGTGCACTTTTTGCAAGGGTAAATTCAAAAAGCGTGAGGAGCTAGAGCGCCACATTCGCATTCTTCACAAGCCCTACAAGTGTACCCTGTGTGAATTTGCTGCTTCCCAGGAGGAGGACCTCATCAGCCATGTGGAAAAAACCCATATCACAGCTGAATCAGCCCAGGGACAGGGTACAGGAGCTGGCAGTGGAGAGAAGCCAAACAATGAATTTCGCTGTGAGGTTTGTGGCCAGGTCTTCAGTCAGGCTTGGTTTCTGAAAGGCCACATGCGGAAACACAAGGACTCCTTTGAACATTGCTGCCAGATCTGTGGACGTCGTTTCAAGGAGCCCTGGTTCCTGAAGAATCACATGAAGGTGCATCTAAACAAGCTTGCTATAAAGAGCAAGCCCCCTGTTGGTGGAGGAGGTGATGAAGATGGACCCTCTGTGAACAGCATGAGCAGCCTGGCTCAAGAAGCCCACGCAAACCTGTATTCACGATACATTTCTTGTCTGCAAAGTGGTTTCCTCACACCCGACAAACAAGGCCTGGCTGAACAGCAGCACCAGATGCTGGCCAAAGCTGGTATAGCTATGAAGGAGAAGGAAATGCTTGGAAAGCTCCTGAGTCCAATGGCCAGCATGGGCCACGGCTTAGGGGAAAATGAAAAGCGCTCACTCTTGGGTTGCCTGAACCTGGTGCCCCCTCTAAAGTCAAGCTGTATGGAGCGCTTGCAAGCTGCAGCTAAGGTGGCAGAGATGGACCCCCTGAACAGCTATCAAGCCTGGCAAATTATGGCACGTGGAATGGCTATGGAACGCTCCTTCATGCCAAAAGAGCAGCATCATGGGGGGCACGGACAAGAAGATGAACTTGCCAGTGCAGCTGGGATTGTTTCCTTTGGGAAAGACAAGCTTGAGCACCCAACCTTAGGCTCTAGTGATGGTTCCAAGCAGAAGCAACATCCTGATGTCCTTCATGGAGTGAAGACAAGTGGAGGCATGATGTCCTTGAAAGATGAGGGTGTAAGCTTTGATAGCCACCGTGAGTTCTTGCCTCACCATGGGGGTCTGGGCCTAGGCCAAGGGCTTGAGTACAGCCTGGCCAGCCTGAAAGAGAAAGCAACTGAGTGTCCTGACTGTGGCAGAGTTTTTAGAACCTACCACCAGATGGTGGTCCACTCCCGGGTGCACAGCAAGGACCGTCGATCCCTAGAGGAGAGCTCCCAGCATGGTCTGGACGAAAGGCGTGGCTCAGCTAGCGACCCTGAATCTCAGTCCATCAGCCGATCCACCACCCCGGGATCCTCCAATGTGACAGAGGAAAGCGGTGCTGGAGGCGGACACTCCCAAACAGGCAGTGTGCAAGATGACAGTCCCCACCCTTCTTCTCCATCTTCAGATGTCGGGGATGAGATGGCAAAACCTGTGAGTGCTGTCCAGCCCCCCACTACCCAGCACCGGGAAAGGAGTGTGGGTTCAAGCATGAAGGACTGCCCCTACTGTGGCAAATCTTTCCGCACCTCCCACCATCTGAAGGTCCACCTAAGAATACACACAGGTGAAAAGCCCTACAGGTGCCCTCATTGTGACTATGCAGGCACTCAGTCAGCTTCTCTGAAGTACCACCTGGAGCGCCATCACCGTGAGCGACAGAATGGAAGCGGCCCCTCAGCCAACCACCCTCCATCTTCTGAACACAAAGATGACCACGGCAAGAACAGCAGCGGCAGTGGGGTCTTTGCTCGTCCCGATGTCCTTCGTGGGGTGTTTAAAGGCATGATGCCCTCTGGTCTTGACTTCAGAGGGGGTCAAATGCTCCCACACCAGTGGGCTCCACCAGGAATGCTCTCACCCAGAGACAGAGACCGTGAAAGGGAACGTGATCGCCATGGACCAGGGCCAGAGCCCACCACAGAGAACATAAAGAGTCCTGAGGGACCAGCCTCTGCAGGGGACAGTCCTGCTAGCTTCTCTGACCTGGGCCGGGCCTACCAGAGTATGGTGGGAAATGGAGTCAACTTCCAGGGCTCCCTGCAAGCTTTTATGGACAGCTTTGTCCTCAACTCCATGAAGAAGGAGAAAGAGATGAGAGAAACTCAGCTGCATGGTCAGCACTTTAGCCAGGAGAGTGCCGAGGCCAAGAACAAAAGAGCCAGTGAGGCCAACCAGGAAGAGAATCCCACCAATGATGTCAAGCCAGCTGAGGGTGGACGCTCACAGTATGAGCCTCTGGATTTGTCTGTTAGACCTGAAGCAGGGTCCCTCCCTGGAGCCTCTATCACCATCCAGGACAATGTCGCCTGGCATGGCTGCCTCTTCTGCTCTTTCACAACTGCCTCTGTGGAGCTGATGGCCCTCCATCTCCAAGCCAACCACCTTGGTAAAGGCAAGTGTGGCCCAGGCAAAGATACTAAGGAGCACCTCCTGGGAGAGCCTTCCCATGCTGGCAAATCTACTGGCTTGGCTCCTCCACCACCAGGCCTTCTTCATCACCATGAGGGAGCCCCGTCCAGGGACAGAGAGAATGAGTCTGGGGATCTGAAGGGACAAGCAGGCTGGTCCAACCATCTGGAGCAGCCCCCGCATGGAGCCTCCATTGGAGCATTCTCCAGTGACTTCTACAAGCCCTTTGGTCCTGTGTATGATGGCTCTGCTAGAGGGCCTGTTGGATTCCTGGACCAGCAGCAAATTCAGCCCAATGATATGGGTGGTCAAGGCCCTTTGGACGACCTATCCGACAAGGCATCTTGCAGCGAGATAGAGGCATCTGAGGAACATGGTGGCCAGTCTGAAGAAGATGAAATGAGTCGTGACAAATCGTTACCCAACCCCACTGTTACAGAGAGGCATATGCATTCAGATAATGAAGAGGAGCCCGGAGAAGAAGAGGAGATGGAGATGGGTGATGCTGAGGAGGAGGATCGTGGATCCATGCAAATGCTTCCCGAATCTCCATTGTCAGCGAAGGACATCCAAAGGTGCAAGCTAACAATGGGCCCCCAAAGCTCTGGGCTTTCTCCCCCTCATCCTTCAACCCCTGAGAAGCAGTGGCAGCAGACAGGCCTTGGTCTTCTGTCCTCAAGCGGTGGTCCTCCTGGCCTGATAAAGCCTGATCAGGCCCACCTGGAGCACCAGATGAACATGCTATCTGTCCTGCGGGCCTACAGTTCAGAGAACCTCGCAGCCTTCAACGGAGGCCTTGGCGGCGGCTCCAATGGAACAGGCAGTGGCACCAGCAGCATGAAAAGAAATGACCCCTCTGGT

Function

symbol description
znf536 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription, DNA-templated. Predicted to be active in nucleus. Is expressed in nervous system; neural tube; and otic vesicle. Orthologous to human ZNF536 (zinc finger protein 536).

GO:

id name namespace
GO:0043565 sequence-specific DNA binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000026_15701090_15742400.mRNA True 3543 mRNA 0.54 4 15701090 15742400

Neighbor

gene id symbol gene type direction distance location
CI01000026_15462834_15471168 CCNE1 coding upstream 229783 15462834 ~ 15471307 (+)
CI01000026_15453381_15456567 NA coding upstream 244517 15452718 ~ 15456573 (+)
CI01000026_15434996_15435874 NA coding upstream 264966 15434448 ~ 15436124 (+)
CI01000026_15428529_15431580 POP4 coding upstream 269075 15428529 ~ 15432015 (+)
CI01000026_15144573_15146721 UQCRFS1 coding upstream 554267 15142586 ~ 15146823 (+)
CI01000026_15796823_15797870 NA coding downstream 54423 15796823 ~ 15798627 (+)
CI01000026_15864670_15915098 NA coding downstream 122144 15864544 ~ 15915162 (+)
CI01000026_15963447_15967856 NA coding downstream 220122 15962522 ~ 15967889 (+)
CI01000026_16112803_16120445 NA coding downstream 369881 16112281 ~ 16121033 (+)
CI01000026_16230831_16238059 NA coding downstream 488431 16230831 ~ 16238838 (+)
G136730 NA non-coding upstream 55840 15602272 ~ 15645250 (+)
G136666 NA non-coding upstream 62510 15633013 ~ 15638580 (+)
G136727 NA non-coding upstream 102387 15598479 ~ 15598703 (+)
G136703 NA non-coding upstream 137969 15562560 ~ 15563121 (+)
G136695 NA non-coding upstream 158614 15542106 ~ 15542476 (+)
G136781 NA non-coding downstream 143616 15886016 ~ 15886293 (+)
G136786 NA non-coding downstream 150761 15893161 ~ 15893363 (+)
G136808 NA non-coding downstream 170849 15913249 ~ 15913451 (+)
G136812 NA non-coding downstream 179532 15921932 ~ 15922189 (+)
G136815 NA non-coding downstream 183007 15925407 ~ 15926036 (+)
G133542 NA other upstream 4224183 11476117 ~ 11477544 (+)
CI01000026_11241496_11246081 NA other upstream 4446017 11241496 ~ 11246204 (+)
CI01000026_11075931_11078249 MDK, MDKA other upstream 4622010 11075784 ~ 11079080 (+)
G133192 NA other upstream 5539129 10159819 ~ 10161961 (+)
G132667 NA other upstream 6131930 9568739 ~ 9569160 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location