AMCG00020526 (gcsh,LOC107738360)


Basic Information

Item Value
gene id AMCG00020526
gene name gcsh,LOC107738360
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 24062892 ~ 24068509 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00020526
TGCGAGCACAGTGTCTCAGGCGCGCAGGTGCAGAGCGGTGAAGCAGTGACCCGGCTGCGCGCTGAGGCGGCTGGGATACGGGCGcgcgcgtgcgtgcgtgcgtcaCTCCGTCAGAGACGCGCGAAGATGGCGATGCGAGCGGCGCTGCGCTGCGTCTCCGCACAGCTCCCCGCCGCCCGGACCCTGCTCCTCCGCCCGGCCCACACAGCGCCCGCCCGGCTGCCCTGGAGGGCCGGCGCCCCTCGGACACTGACCACCGCCTCTCAGCTGGGCTCAGCCCTTAAATTCACAGACAAACATGAGTGGGTGCGAGTGGAGGATGGGGTTGGAACAGTTGGCATCAGCAATTTTGCTCAGGAAGCATTGGGGGATGTAGTATATTGTGGACTTCCAGAAGTTGGGACAAAGCTTGGCAAAATGGATGAGTTTGGTGCTTTGGAAAGTGTGAAGGCTGCTAGTGAGCTCTACTCTCCTCTGACTGGGGAGGTAACTGAAATCAACCAGGCTCTGGCAGACAACCCAGGGCTAGTGAACAAGTCCTGCTACAAGGAGGGCTGGTTGATCAAGATGACCATTGATAACCCAGCGGAGTTGGAGGAGCTGATGGACGAAGACGGTTATGAAAGATATATCAAATCAATTGAGGACTAACAGGATCCCTGGGAGTCACTGTTCCCCTTTCTTATGTAAATTGTGGTTAGAACTTTCCACACTAATACCACCCACCTCCTGCCCTGAACCACTACAGCTCCAGCAGGTGGTGTAGTAGAGTCAGTgggaaaactgcaaataaaacacaaacgaGTTTTCTAACTGGATTTAAActggatttattttgattttttttttttcttattttgatttttttaaccTTATATCTTGGGATCTTTGATTGCACAGCAGTGTAACGACTGTGCGTAGACATTATTCCCATGACACCGTAGATGTCTAGTTAgttaaaatcagcagggtagcTGGGCTGCTCTTTCAGTCCAGGCCTGCTTTTGATGGTGAGTATCTACTGAGAGAAAGTGCTTTGTTAGCGGGACAATTGTCACTTGTGTGtcttataaataaaactacCTTCAGATTAGAGGGAACTGGCCTATTTTCTTAAGTCTGACCATTTGTGGCTTTTCAACATACTCAAGgggttgtattttcttttattctaaTAGATTGATTAGTCCTCATGCAAAATTCTATCATTTACATATGCAAAGCAAGGATTTGATCCCAGGGAAGTTTCTCTCTATCAATCCACAGCAGGACATTTGTCCTCAATGGAAGAGGACGGTATAATTGACAGGGCTCTTTATCATTAACAGTTTCCTTTTAATACTTCATAATTACaacatctttaaataaaatatttttcaaactaAAA

Function

symbol description
gcsh Predicted to enable aminomethyltransferase activity. Involved in protein lipoylation. Predicted to be located in mitochondrial matrix. Predicted to be part of glycine cleavage complex. Predicted to be active in mitochondrion. Implicated in glycine encephalopathy. Biomarker of amino acid metabolic disorder.

NR:

description
PREDICTED: mitochondrial glycine cleavage system h protein isoform X1

GO: NA

KEGG:

id description
K02437 gcvH, GCSH; glycine cleavage system H protein

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00020526 True 1387 mRNA 0.48 5 24062892 24068509

Neighbor

gene id symbol gene type direction distance location
AMCG00020527 rpl13 coding downstream 7324 24052022 ~ 24055568 (-)
AMCG00020525 cpne7,LOC107090182,LOC102798764 coding downstream 47125 23994388 ~ 24015767 (-)
AMCG00020524 LOC107565376,LOC106562089,LOC106587181,LOC107738346 coding downstream 80009 23981360 ~ 23982883 (-)
AMCG00020523 NA coding downstream 139103 23919711 ~ 23923789 (-)
AMCG00020521 LOC106562086,LOC106587179 coding downstream 163121 23872414 ~ 23899771 (-)
AMCG00020540 kars coding upstream 6364 24074873 ~ 24085010 (-)
AMCG00020539 NA coding upstream 23225 24091734 ~ 24120738 (-)
AMCG00020541 NA coding upstream 96161 24164670 ~ 24196960 (-)
AMCG00020542 NA coding upstream 167619 24236128 ~ 24242643 (-)
AMCG00020538 NA coding upstream 239733 24308242 ~ 24328823 (-)
G63921 NA non-coding downstream 149671 23912862 ~ 23913221 (-)
G63858 NA non-coding downstream 783819 23278792 ~ 23279073 (-)
G63836 NA non-coding downstream 856971 23202970 ~ 23205921 (-)
G63834 NA non-coding downstream 868363 23194144 ~ 23194529 (-)
G63829 NA non-coding downstream 880785 23171808 ~ 23182107 (-)
G64012 NA non-coding upstream 164207 24232716 ~ 24233398 (-)
G64013 NA non-coding upstream 165133 24233642 ~ 24235127 (-)
G64028 NA non-coding upstream 235975 24304484 ~ 24304935 (-)
G64120 NA non-coding upstream 617015 24685524 ~ 24687760 (-)
G64126 NA non-coding upstream 632624 24701133 ~ 24701336 (-)
G63819 NA other downstream 900992 23154692 ~ 23161900 (-)
G63679 NA other downstream 1518203 22543842 ~ 22544689 (-)
AMCG00020489 rnf166,LOC106587267,LOC106562062,LOC107685853 other downstream 1596125 22440792 ~ 22466767 (-)
AMCG00020471 NA other downstream 1930155 22130842 ~ 22132737 (-)
G63464 NA other downstream 2750287 21312202 ~ 21312605 (-)
AMCG00020561 NA other upstream 579494 24648003 ~ 24677810 (-)
AMCG00020559 NA other upstream 623384 24691893 ~ 24698947 (-)
AMCG00020560 NA other upstream 685373 24753882 ~ 24776409 (-)
AMCG00020581 NA other upstream 1042601 25111110 ~ 25119596 (-)
G64247 NA other upstream 1052589 25121098 ~ 25139385 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_034221 kars1 coding NC_007118.7 CM002891.2 67429185 ~ 67463021 (+)
grasscarp (Ctenopharyngodon idella) CI01000043_03548130_03586519 KARS coding CI01000043 null 3547810 ~ 3586936 (-)
rainbow trout (Oncorhynchus mykiss) G2015358 LOC106562090 non-coding NC_048590.1 CM023244.2 26425980 ~ 26430254 (-)