AMCG00020541


Basic Information

Item Value
gene id AMCG00020541
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 24164670 ~ 24196960 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00020541
ATGTGTGTTACTCTTCTCTCTCTGGTTACTTCTGTCCTAGCCTGGTGTGTCTCCAGAGGTGTTGCTCTGGATGGCCAGGAAGCACCAGCCTGCCCAGACTTCCAGAAGGGCTTTGATGGCTCGTGTTATGAGTTTGTGGGTTTGCAGCGCTCTTTCCTCAGTGCCCAGGGCTGGTGTGAGAGAGGCGGTGGGCACCTGGCCTTCGTTCTCAACGACGAGACTCAGCAGTTCCTGCAGAAGCATCTAGCGCCCAACCAAGACTGGTGGATCGGACTGGCACCTGCTTCTCAGAACCTGACCCTGCAGATCCCAGGCGCTGAAGGCCCGCTGTCCTGGCTTGATGGCTCTGATGTAAGCTTCTCTAACTGGCATAAGGAGCCTCAAACTGGCCCTCACTGCGGACACATCCTGAGGGATTCTGGGTTCCAATGGGAAGCTACGAACAACTGCACTGAAGAGTTTCACTTTGTCTGTCAGTTTGaGTTGGACCGCACCCTAGCCTGTGTGGACCACAATGCAACACTGCAGTGTGGCTCCGGTCAAGTCATTGAGATTGACGACAGCTTCTATGGCAGGAAGACCCTGCATTACTGCCAACTGCTCACTCCTCCATCTGCCTCACCCCCCCAGGAGGAGTGCAGCTGGGTAGATGTGGTTGAACTGGTATCAGGGCACTGCCATGGGTTGCAGGTGTGCCAGGCTGCAGCCGACATGGCTTCATTTGGAGAACCATGCCCAGGATTTGGGAGCTACCTGTCTGTGGAGTACCACTGCAAAGAGGGGCTGAAGCTGGAGGTGGTGGACCCAGCTGCTGTCTTTGAGAATGTCACCATCGGTATCAAATGGCTTCTCAAACCCTTCTCTGGAAATCTCACCTGCACTCTAGGCACTGGTGATGGACACACCATTGACCCCTACAGTCCCGTGAGCCTAGAGAGCAGCGTTATTCACAGCTACACCCGCCCTGGTATCTACACTGTCACTGTGGAGTGCACCACCAGTGAATGGTATGTGACTGCCCAGAAAGCCATCACCATCCAGGAGCCGATAGGCGACTTCGGAATTGTCAGGTGTTACAGCATGAACCATTCAGGAGAGAGCGGGAACTGCAGGGCCCTCTATGGCAGCACATTGCAAATCCAGGTGGAGCTAGATGCAGGTACGAATATCACTTACAAAGTGCAGACTGGGAGTGATCTACTGGCTACGCTAACAGCCATGAGAGGGATCAATCCGCACAACATCACCATCGACTCCATGGCTAAGCAACAGCTAGGCCCAGGTTCCCATCGTCTCACTATCCTTGCGTCAAATGCAGTATCGGCGTCTGAGGTCTCTATGGCGCTGGATGTCCTCTTTGTGGAGCCAATTCTGGGTCTGCAGGCCTCAGTAGTGAGTGAGGGCGCGTTATCCATGGGGTCAGACATCcaggtcagtgtgtctgtgtctcatgGTGCTCCATTGCAACTGCACTTCAAGATCACTGGTGCCAATGAGAGTTTCTCTGAGACCAGGCAGATGGATGTCAGCAAACTCCAGGTTTTCAACCTCCCAGTGAGATTCCAAGGTACTTTACTGGTGACAGTCAGGGCTACAAATGGCTTTTCTCAAATGGATGTGGAGGCTGGGAATGTCACGGTCATTTCCAACATACccgaaacaaatacaaatacaacagacTCTGATGAAGAGAAAGATTCCAGCACAAAGAAGGAGCAGAGGGATCTCGGTGAGGACATGTTTTTACCAGCTTCTAAAACAAGGGCGGTGCGGAATGGACAggattttcaaattaaagagAGTCACAACATGCCAGTAGAGACGGACTCTAAGGTTACTCTAGAAGCGGTCAACTTCGGTTCCGATGGTGATTACACCTTCAAATGGAGCTGTGTGGATGGATGCTGGCCACAGATGAAGAGTTGTCAAGATGCACTAGACAATTCTAGAAAACAGTTGGAAATTACACCAGAGTGTCTTCCAGACCCATACACCATTGTGGCTGTCAATGTGACTGCAAGGAATACAGGGAATACCAATCCTCAGACTGCAGTGAGCTGTATAGCTGTCACTGCAGCTAAGCATCTGACTCTGGATATCAAGTGTACTGAAAACTGTGGCCCTGTGGACAAGAGCAAGGCTGTTTATCCAAAGGGCTGTTCTATCAAAATGAATGGGCCAGCTCTCAGTTTGAGAGAAGGGCAGCAGGCAAATGACTTGGTTGTGTCCAGTTCAGAACTGCAGACATCCAAAAGTAATATTAAAGTGAAGGCATTAGGTATTTCTGGCACTCAATCGGGATCCGCAGATTACACAATTAAGCTAAATAATCCTGGACCTACAAATAACCCCAGTACCACGACCCTTGATACCAGTACAGACACCAGCAAAACCACTACTGCAGCCTCTGCTCCCATATCTACTGCATCGACGGACACTATGACAAAAGCTGATTTAACTTCTTTGGATACCACCACACATTCACTATCTACTGCTGATGTCACTGCCGCACCCACACCAGCAATTCCTCCCAGCCTGCCTTCCTGTACTATTTGCCCCTCTGAGGGAACCACTTTGACTCCGTTCACTATTGATTGTACTGGGAGCACATGTGCTGTGCAGCCCTGCATTTACTGCTTCAAGACCGAAAACTTCCTTTACTGTGGGTTGAATCAAATGGTGCAATCTCTCTACCTTCCTCTCGGCAACAAAAATGACAACTTCACGCAGATCATTACAGTGACTGTGACGAACAGGATTCATCTAACCAGCAGCAGCCCAGTGTTCACTAGGGTGAGAAATGCAACAACTGGCATTAGTGTGAATGGACTGCATTCCCTGCTATCTCAGCAAGTGTCCTCCTTGCAGCAGGAGGCGAATCTGGGGACAATGCTGGCTCATATGTACCAGTCTGTGTTGACAGAGATGAACATCAACTCTGATGTGCAGGAGAAAAGTCAAAGGGTGGAGatgcgACAGCAGATGATAAACAACCTGACTTCAGCTTTCCAGATCAGCTCTGCAAAATCCATCGAGGACATTCAACAGGCTGCCGGGGCTATAATGGCAATCACAGACCGCAGTGATGAGCTGACCCCTACTGCCGTGATTCAGGCATTCGATTTCATTGAGGATCTCAGCCAGTCCCTGCTGTTCTACAATTACCAAATATCGGGTCATGTGGTCCGCACTGTTGACAACGTACAGAGTGCCCTCCTCGCTGGGAGACAGCTCAATCAGAAGGCCAGCACTCTAAGTACACCCCAAATCAGCCTTTATGTCAACAGGGTGTCACCCGATCAAATTCATGGGCAGGTCTTCAATGTAAAGAACGCCAGCTCTGCCCACTTCACACTCCCACTGGCCACCGCCTCGGCACTCCCTACAAATGAGTCCATTGATGTGCGGgtATGGCCCTTAAACAGCCACAGCCTCAGAAAGAGGGAAATGGTGAGTCTGGGTATGAATCCATACTCGTGGAGTGAAGGGGAGTCCATCAGTGGGATTGTTGGAGGTCTGTCCCTGACCAGAGAGAACGGATCAACGATACCTGTCAGCAACCTTACTGCAGAAATTGAGATCCTCTTGCCAAGGCCAAAGGCTGGCGTCGTGAACAGTACAATTCTGCATCTGAGCAACTACAGCACTATTATGGTCAACATGACAGTGACAAATATCTCCCTGGTGCTGAAGCTGGAGCCATCTGAGGACATCCCCATGCAGCTGCTCCTTGGTTTCCTTTACCACCCCAATGACACACACAATGATGCTGAGACCCAGCTCCCACACTCCGGCTCCACCATGGAGGAGAAGTATACTTGGGTGCTGGGCCCTAATGATTTGCCACAAGAGATAGGGGTTTACTATCTTCTGGTGAGACCCATTGTCAAAGCGGGGGTCAACTCCACAAATGCAACCGTTTCTGTCACCTCCATCACTACCCAGTGCGTACATTGGGACGAGGTGAAAAGCAATTGGAGCACTCAGGGATGTCGGGTGGGTCCTCTCACCACCCCCCAGGTCACCCAGTGCCTGTGCACCCACCTGACCTTCTTTGGGAGCTCCTTCTTTGTAATGCCCAATGTCGTGGATATCTCTCGCACAACTGAGCTCTTCGCCACCTTCGCTGACAACCCTGTAGTGGTGTGCTTTGTGGGGGCTATATTTGTGGTCTATATCCTGTTTGTCATCTGGGCGCGCAGGAAGGACATCAAGGATGCAGCCAAGGTGAAGATCACAGTTCTGGAGGACAATGACCCGCTGGCTCAGTATCGCTACATGCTGACTGTCTGCACTGGGCATCGGCGTGGAGCAGCTACTTCTTCACAGGTGACAGTAACTCTGCTGGGCTCCGAGGGACAGAGTGAGCCCCACCACCTGACTGATTCGGACAAGCCAGTGTTtgagagaggggggacagaCATGTTCCTGCTCACCACCCCCTTCTCCTTGGGGGAGCTGCAGAGCATCCGACTGTGGCACGACAACTCGGGGGACTATCCTGCCTGGTATATAAACAAGGTGATCGTGCATGACCTGGAAACTGATCAGAAGTGGCACTTCCTGTGTAGCTGCTGGCTGGCAATTGATGTTGGCGATTGTGTATTGGATAAAGTCTTCCCTGTTGCCACAGAGATGGACCTTAAAAAGTTCAGCAATCTGTTCTTCATGAAGACTGCAAATGACTTCGGTGATGGTCACATCTGGTACTCCGTGCTGAGCCGCCCCCCACGCAGTAACTTCACGTGTGTGCAGCGTGTGTCCTGCTGTTTATCGCTCCTGCTCTGTACCATGTTGACGAGCATCATGTTCTGGGGCATCCCCAAAGACCCCAGTGAGCAGAAGATGGACCTGGGTAAGATTGAGTTCACCTGGCAGCAGGTGATGATTGGGATCCAGAGCTCTGTCATCATGTTTCCCATCAACCTTCTCATCGTGAGCATCTTCAGGAACACCTGCCCGCGTGAGAAGAAGTCAGAGCAGCCCAGCAAACAGGCCAAACCTGAGCCAGCCAAGCAAGGAAAGTCTGGCCGGGTGACCCCATCCCAGCCTCCCTCGCCCCAGAGTGTCCACAGGGACATCACCCCCGATTCGGTTATCAAGGACATCAAGAGGATTGCACAGTCCCTGTCCAAGGTCATGAAGAGCCCGGTTCCACAGCTGGAGAAAGACTTTGGGAGGACCACTGACATCAACAAGCTGCTGTCAATGGTGGAGGAGATTATCCGACTGCAGAACCGGGCTGGGGGGGATTTCTACACCGAGACCCGCAAGAAAGAGGGATCCCTTGTCCTCACGCTGGGGGCCGTCAATCTGCAAGAGAGCACTCCCAGCGGGAGCCCAGAGCGGACAAGCATTGACGGCCAAAAGCGCAGCAACTACAGTCTCTACCTGTACAGGCAGCTGCAGCATGTGGAGAAGGAGCTGCAACTGCTGGGCCCCACACGCTTCAAACCCCCCCAGAGCTACAGGCAGGCAATGCAGCAGGTACAGGGCATGAAGGGGCTGCTGGAGTCTCACCTCTCTGAACAGGACAGGCAGGGGCTGTCTGGAAGCCCCAGCCCTGCAGAGAACAGCACCAGGAAGAAGTGCTGTCAGAACGGGCTGCCCTGGTGGTTTGTGTTCATTGGCTGGTTCCTGGTGGTGGCCACCAGTGGCATGTCGGGTTTCTACACCATGTTGTACGGACTGAAGTATGGCAAGGACCGCTCCGTCAGCTGGCTCATCTCTATGACTGTGTCCTTCTTCGAAAGCCTCTTCATCACCCAGCCTCTGAAGGTCCTAGGATTTGCTGCCTTCTTTGCCCTGGTGCTGAAGAAGGTGGATGTGGATGAGGGGAGTGAAGTGGCCATTGAAGGGACCCTCAGTAACCCAGGAGATCCTGGAGCTGTACTGAGCACTCGCAGAGATAGCACCTGCAGTTTCTACCAGCCCCCTCCTCCTACAGACATCGAGAGGATGAGAAACAACATGATCAAGGAGCAGAAGGTCTTCGCGCTCATTAGAGAGATTCTGGTGGCTTATGGCCAGCGGGACCCTCACGCCTTTTTCCTGACCCAGCATATCGAGAAGAGCTTCACCAGCGGAACGTCAGATAGCATGAGCCACCAGGATGTGTTCACTTGGGTCAACACCACCGTCCTCAGCAACCTCTTCGGACAATATCCAGGGTTCATCACAGATGGCAACTCCAAGCTGGTGGGCAGTGCCCGAATGCGGCAGGTGCGTGTTCGGAGAGACTCGTGCCCCGTGGCTAAGTCTATGCGCGGCTCCATTCCCGACTGTCATGCCCCCTATTCCTGGGATCTTGAGGACATGGGCTTGTATGGGCCAGGCTGGAACACCTCCACCCTGGCAAACAACTCACAGGCCCCAAAGGCCTGGCAGTACCAGAGCCAGGGAACTCTGAGGGCACATCCAATCTGGGGTAGCGTGGCTCTCTACAGAGGAGGTGGGTACGTGGCAGATCTGGGCCCAGACCTTCAGAGCGCCACCAGCactgtctctccctcctcctcagGAGCATTCCAGCTACGCAGTGAGCTGCAGAGCGTCCGTCTGTATCAGTCCAGTAGTGGCATGAACGTCTTTGTCATGGCTTCTGAGGTTATCTATTTCCTCTTCATTCTCTACTACATGTTTGTTCAGGGTAAGCGGATTAAGGAGCAGAAGTGGGCGTACTTCCACAGCAAGTGCAACCTGCTGGAGTTGGCCATCATCACCCTAAGCTGGAGTGCTCTGTCTGTGTTCATAAAGAGAACCCTGCTGGGCAACCAGGATGTGGAGTACTACCAGCTCCACCGAGACCAGTTTGTCAGCTTCTATGAGACTGCTGCAGCAGATGCCGTCCTGGGGTACCTGATTGCCTTCCTGGTGCTGCTTGCCACGGTCAAACTGTGGCACCTCCTGAGACTCAACCCCAAGTTGCACATGATCACTTCCACCCTGCAGAGAGCCTGGACTGACATCTCAGGCTTCATCATTGTCATGATCATCATGTTCCTGTCTTACTCCATTGCTTTTAATCTGATATTCGGCTGGAAGCTGTACTCTTACAGAACACTCTTGGAGGCTGCCCAGACCATAGTCAGCCTGCAGCTGGGGATTTTTAACTATGATGAGGTTCTGGACTTCAATCCAGTCCTTGGAGCATTCCTCGTTGGGTCCTGCATCATATTCATGACCTTTGTGGTTCTCAACCTCTTCATCTCTGTCATTCTGGTGGCGTTCAGTGAAGAGCAGAAAACCCACAAGCCCTCAGAGGAGGAAGAGATTGTCGACCTCATGCTGATGAAGATCTGCAGTTTCTTTGGGATCAGGAGCAAGAAGGatgagaaagagggagagaacgGGGCCAAAGGCAGCAGCTCAAAAACACCAACTCGCACACCAGGCCTGTCTGCTTCATAG

Function

GO: NA

KEGG:

id description
K04988 PKD1L2; polycystin 1L2

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00020541 True 7410 mRNA 0.52 43 24164670 24196960

Neighbor

gene id symbol gene type direction distance location
AMCG00020539 NA coding downstream 43932 24091734 ~ 24120738 (-)
AMCG00020540 kars coding downstream 79660 24074873 ~ 24085010 (-)
AMCG00020526 gcsh,LOC107738360 coding downstream 96161 24062892 ~ 24068509 (-)
AMCG00020527 rpl13 coding downstream 109102 24052022 ~ 24055568 (-)
AMCG00020525 cpne7,LOC107090182,LOC102798764 coding downstream 148903 23994388 ~ 24015767 (-)
AMCG00020542 NA coding upstream 39168 24236128 ~ 24242643 (-)
AMCG00020538 NA coding upstream 111282 24308242 ~ 24328823 (-)
AMCG00020544 NA coding upstream 154521 24351481 ~ 24370043 (-)
AMCG00020545 zcchc14 coding upstream 204210 24401170 ~ 24401799 (-)
AMCG00020546 NA coding upstream 281541 24478501 ~ 24508437 (-)
G63921 NA non-coding downstream 251449 23912862 ~ 23913221 (-)
G63858 NA non-coding downstream 885597 23278792 ~ 23279073 (-)
G63836 NA non-coding downstream 958749 23202970 ~ 23205921 (-)
G63834 NA non-coding downstream 970141 23194144 ~ 23194529 (-)
G63829 NA non-coding downstream 982563 23171808 ~ 23182107 (-)
G64012 NA non-coding upstream 35756 24232716 ~ 24233398 (-)
G64013 NA non-coding upstream 36682 24233642 ~ 24235127 (-)
G64028 NA non-coding upstream 107524 24304484 ~ 24304935 (-)
G64120 NA non-coding upstream 488564 24685524 ~ 24687760 (-)
G64126 NA non-coding upstream 504173 24701133 ~ 24701336 (-)
G63819 NA other downstream 1002770 23154692 ~ 23161900 (-)
G63679 NA other downstream 1619981 22543842 ~ 22544689 (-)
AMCG00020489 rnf166,LOC106587267,LOC106562062,LOC107685853 other downstream 1697903 22440792 ~ 22466767 (-)
AMCG00020471 NA other downstream 2031933 22130842 ~ 22132737 (-)
G63464 NA other downstream 2852065 21312202 ~ 21312605 (-)
AMCG00020561 NA other upstream 451043 24648003 ~ 24677810 (-)
AMCG00020559 NA other upstream 494933 24691893 ~ 24698947 (-)
AMCG00020560 NA other upstream 556922 24753882 ~ 24776409 (-)
AMCG00020581 NA other upstream 914150 25111110 ~ 25119596 (-)
G64247 NA other upstream 924138 25121098 ~ 25139385 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000043_05047820_05058629 NA coding CI01000043 null 5047820 ~ 5058629 (-)