AMCG00020659 (gpib,LOC108428767,LOC100196524,LOC103130839)


Basic Information

Item Value
gene id AMCG00020659
gene name gpib,LOC108428767,LOC100196524,LOC103130839
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 28250873 ~ 28265191 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00020659
CCCGCCCGCCCTGCGCTGTCCAGCCGCAGTGTGCACTCGCTCGCAGGGTTGTCTCCGCACCGCAGCGCTCACTCCTCCGCTCCGATCAGCATGGCTCCCGGACTCACCAGCGACCCCAGCTACAAAAAGCTGGAGAAATGGTACAAAAGCAACGCTGGCAACCTCAACATGAGGCAGATGTTTGACGCCGATAAGCAGAGGTTCAGTAAATTCAGCACAACACTTAAAACCGATGAAGGAGACCTCCTGATAGATTATTCCAAGAACCTCATTACAGAGGAAGTCTTGCAGATGCTGTATGAAATGGCAAAGTCGAGGGGAGTACTGGAAGCCAGAGAGAGGATGTTCAAAGGAGAGAAAATCAACTTCACGGAGGGTCGAGCTGTTCTCCACATTGCCCTGAGGAACCGTTCCAACAGCCCCATCGAAGTGGACGGCAAGGATGTCATGCCCGATGTCAACAACGTCCTGGAGAAGATGAAGGGCTTCTGTCAGAAAGTGCGCAGTGGAGACTGGAAAGGCTATAGTGGAAAACCCATTACTGACGTTATCAACATTGGCATTGGAGGTTCTGACCTGGGCCCCTTGATGGTGACTGAAGCTCTGAAGCCCTACTCCAAGGGAGGACCCCGCGTCTGGTTCGTCTCCAACATCGATGGCACTCACATGGCCAAGACCCTAGCTGAGCTGGACCCCGAGACCTCTCTCTTCATCATTGCATCCAAGACCTTCACCACCCAGGAGACGATCACCAACGCAGAGTCCGCCAAGGAGTGGTTCCTGCAGAAAGCTGGTGATGCATCTGCTGTGGCCAAGCACTTTGTGGCGCTCTCCACCAACGCTccCAAAGTGAAGGAGTTCGGGATTGACACGAACAACATGTTTGAGTTTTGGGATtggGTTGGTGGCCGTTATTCCCTGTGGTCAGCTATTGGCTTATCAATCGCTTTACACATAGgctTTGAGAACTTTGAGAAGCTGCTGAGTGGGGCTCACTGGATGGACAATCATTTCCGCACTGCCCCTCTGGAGCAGAATGTCCCCATCCTGCTGGCTCTGCTGGGAGTCTGGTACATCAACTTCTTCCAGGCAGAGACGCACGTCATGCTGCCATACGACCAGTACATGCACCGCTTTGCTGCATACTTCCAGCAGGGTGATATGGAGTCCAATGGGAAGTACATCACCAGTAAAGGGGACCGTGTGAACTACCACACTGGGCCCATCGTGTGGGGAGAGCCTGGGACCAATGGGCAGCATGCTTTCTACCAGCTCATCCATCAAGGAACCCGTATGATCCCTGCTGATTTCCTCATCCCTGCTCAATCTCAAAACCCCATCAGGAGCAACCTGCACCACAAGATCCTGCTGGCTAACTTCTTGGCCCAAACTGAGGCCCTGATGAAGGGAAAATCCTCAGATGAGGCCCAGAAGGAGCTGGAAGGGGCAGGCATGAGTGGAGAAGCGCTGGAGAAACTGCTGCCTCATAAGGTCTTCCAGGGAAACAAGCCAACCAATTCCATGGTCTTCACGAAACTGAATCCCTTCATGCTTGGAGCACTGATTGcGATGTATGAACACAAGATCTTTGTGCAGGGTGTCATCTGGGACATCAACAGTTATGACCAGTGGGGGGTGGAACTGGGGAAACAGCTGGCCAAGAAAATCGAGCCCGAGCTGCAGGATGCTAGCGAGGTGACCTCACACGACAGCTCAACCAATGGGCTGATTGGTTTCATCAAGAAGAACAGTGCCTGACTTCCTGACCCGGTCCCCTGCCCCGTGGGAAGCAACTGCACAGCTCTCCGGTGGCTGCTGTAGTCGCCGCTTGTTAGGCGTTATAGAGGAGCAGAAGCACTTTACGTCTGTAATCGCCCGTCTGTGTTCTGAGTGTCTGTCACCCTGTGAGCCGCCCTTGTGTTAGTGAGTGTGTCTAATAAGGGAATCGCTGTTGAAATACTGTAATTTGTGCAGATGTTAACGCCCTAATCTTTACCTAATCACGACTTACAActtaccaaaataaatgtttcatgttGGACACCTTTAAAA

Function

symbol description
gpib Predicted to enable glucose-6-phosphate isomerase activity and monosaccharide binding activity. Predicted to be involved in gluconeogenesis; glucose 6-phosphate metabolic process; and glycolytic process. Predicted to be located in extracellular space. Predicted to be active in cytosol. Is expressed in several structures, including blastoderm; blastomere; head; heart; and yolk syncytial layer. Human ortholog(s) of this gene implicated in congenital hemolytic anemia; congenital nonspherocytic hemolytic anemia; intellectual disability; and neuromuscular disease. Orthologous to human GPI (glucose-6-phosphate isomerase).

NR:

description
PREDICTED: glucose-6-phosphate isomerase-like

GO:

id name namespace
GO:0006094 gluconeogenesis biological_process
GO:0006096 glycolytic process biological_process
GO:0004347 glucose-6-phosphate isomerase activity molecular_function

KEGG:

id description
K01810 GPI, pgi; glucose-6-phosphate isomerase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00020659 True 2052 mRNA 0.52 18 28250873 28265191

Neighbor

gene id symbol gene type direction distance location
AMCG00020658 NA coding downstream 103026 28137230 ~ 28147847 (-)
AMCG00020653 NA coding downstream 215464 27863475 ~ 28035409 (-)
AMCG00020652 NA coding downstream 393255 27795256 ~ 27857618 (-)
AMCG00020651 NA coding downstream 464848 27752194 ~ 27786025 (-)
AMCG00020650 NA coding downstream 539169 27599214 ~ 27711704 (-)
AMCG00020662 NA coding upstream 63794 28328985 ~ 28342177 (-)
AMCG00020664 kctd15,LOC107668486 coding upstream 166588 28431779 ~ 28450361 (-)
AMCG00020666 NA coding upstream 216291 28481482 ~ 28487871 (-)
AMCG00020669 cebpg coding upstream 539010 28804201 ~ 28804674 (-)
AMCG00020672 NA coding upstream 736580 29001771 ~ 29013295 (-)
G64745 NA non-coding downstream 830227 27420366 ~ 27420646 (-)
G64708 NA non-coding downstream 1014551 27236083 ~ 27236322 (-)
G64632 NA non-coding downstream 1505050 26745549 ~ 26745823 (-)
G64630 NA non-coding downstream 1518585 26731435 ~ 26732288 (-)
G64629 NA non-coding downstream 1520762 26729855 ~ 26730111 (-)
G64847 NA non-coding upstream 51578 28316769 ~ 28323164 (-)
G64886 NA non-coding upstream 592798 28857989 ~ 28858354 (-)
G64912 NA non-coding upstream 731201 28996392 ~ 29001633 (-)
G64991 LOC103376870 non-coding upstream 994366 29259557 ~ 29314059 (-)
G65023 NA non-coding upstream 1620410 29885601 ~ 29885899 (-)
AMCG00020657 NA other downstream 11799 28161602 ~ 28239074 (-)
G64811 NA other downstream 21226 28226535 ~ 28229647 (-)
AMCG00020639 LOC107583916 other downstream 1001197 27246014 ~ 27249676 (-)
AMCG00020613 NA other downstream 2302530 25934901 ~ 25948343 (-)
G64470 NA other downstream 2332243 25898428 ~ 25918630 (-)
AMCG00020661 ss18l2 other upstream 59846 28325037 ~ 28328312 (-)
G64882 NA other upstream 523389 28788580 ~ 28796956 (-)
G65000 NA other upstream 1116124 29381315 ~ 29405636 (-)
AMCG00020685 bat1,slc7a9,LOC106592435,LOC102305828,LOC106596152 other upstream 1255000 29520191 ~ 29533117 (-)
AMCG00020694 wwox other upstream 2184554 30449745 ~ 30531136 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000179_00597117_00615140 GPIB, GPI, GPIA coding CI01000179 null 597117 ~ 615417 (+)