AMCG00021267 (timm8a,LOC107593201)


Basic Information

Item Value
gene id AMCG00021267
gene name timm8a,LOC107593201
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 13435307 ~ 13437408 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00021267
ATGGAGGGGCAAGGGGTTACTGCAGATCCGCAGCTCCAGCAGTTCATTGAAGTGGAGTCTCAAAAACAGCGATTTCAGCAGCTGGTTCACCAGATGACAGAAGTCTGCTGGGAGAAATGCATGGACAAACCTGGACCTAAGCTGGACTCAAAAACGGAGACATGTTTCGTGAACTGTGTGGAGCGGTTCATTGACACCAGCCAGTTCATTTTGAACAGGCTGGAACAGACTCAGAGGACCAGGGGCTCTTCCTCAGAGAGCATGTCTGACTAA
>TU105892
GCTTCCGGCGAATCGCGCTGCCTGTGCAGACACGTGAAGGTCAGCGGCTTTGATCTTATTTCCCTTAAAGTGTCGGCTGTAAGTGCTCgggtttatttaaaactgtattcgAGAAACCACGCAGGATCTGAAGTTAAAAAAGTCATCTGTCAATGGAGGGGCAAGGGGTTACTGCAGATCCGCAGCTCCAGCAGTTCATTGAAGTGGAGTCTCAAAAACAGCGATTTCAGCAGCTGGTTCACCAGATGACAGAAGTCTGCTGGGAGAAATGCATGGACAAACCTGGACCTAAGCTGGACTCAAAAACGGAGACATGTTTCGTGAACTGTGTGGAGCGGTTCATTGACACCAGCCAGTTCATTTTGAACAGGCTGGAACAGACTCAGAGGACCAGGGGCTCTTCCTCAGAGAGCATGTCTGACTAAACCGTGTTGGCAATAGGACACAGACTTTGGCGACATCGAACGATGATAGATGCAATCCAGCGAGGCTGCTGCATGTGCAGCCTGGGAAGAATAGAGCCACGTTAATAAGGGTGGACTACAGATGTTTGGTGCCTCATTTCACCTGGAGCAGTGATGCAGTCTCTCACTCTCGTTCCCCCTTACAGCAGGTTCTACAGAACGTATTAGAACATGATTTCAGTTGTCAAAGCCACTGAGTTGCCTTTACCTtgtcaaatatttaacattgtaCAGGACAAATCCATTTATACAAATAAGATTCAGCCCCTTTTAAAACATGTAGTGGATTTGTGGTTCATCTGCACTGGGTGGAAAACCAAGAATGCTGaagctgaagaaaaaacatacaagaacACTGAACTGCAACTCCCATTCACATCCAAAACCCTCTGAAGCTTCAATGGCTCACTGCACAAGAAAAGCCAACTGGAAGCAGCCAAAGTACACTAACGTTTTTGCAACTGTACACTTGTCCTGTTAATGTCAAATACAGAAAACTGAACTCGCAGTGTGCTTTTTTGTgggttaaaacattttacaatttgtagatgaaagtgaaatacaaaatgatggTTATGCATTTTGCCGATCCAAGATTAGTACAGTAAGAGGGTTTTCTAAGGCAATACAAACTGCCTCTGCGACAGCAGTTTCTTTTATCTACTGGTTTAGTTCTAAAAAatgctaaacaaaaacattgtttccaCATAAAACCTAGTAAAACCAACCTTTAATAGTAGCCTTATCTTGCAGAGAAAAGCTCCACAAGGTTTAATAAGTAATTTAGACAAATAAGTTGCATAAGGATGAaccatacattttcaacagtTAAAAAATACACCCAAGACTAGAAACCAAATTGCATATTCCATTTCAGATTAATAAATGTTGGTTTCTTTGCATACCACAAATATTTCCAAACTTTTGTCTTGCTGTACTTAACCAATTTCCTTCATTACAATAGCAggacatttatataaaaaaaa

Function

symbol description
timm8a Predicted to enable metal ion binding activity. Predicted to act upstream of or within protein transport. Predicted to be located in mitochondrial inner membrane and mitochondrial intermembrane space. Human ortholog(s) of this gene implicated in deafness-dystonia-optic neuronopathy syndrome and dystonia. Orthologous to human TIMM8A (translocase of inner mitochondrial membrane 8A).

NR:

description
PREDICTED: mitochondrial import inner membrane translocase subunit Tim8 A

GO:

id name namespace
GO:0015031 protein transport biological_process
GO:0005739 mitochondrion cellular_component
GO:0046872 metal ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00021267 False 273 mRNA 0.51 2 13435459 13436383
TU105892 True 1450 lncRNA 0.41 2 13435307 13437408

Neighbor

gene id symbol gene type direction distance location
AMCG00021265 NA coding upstream 1778 13419812 ~ 13433529 (+)
AMCG00021264 NA coding upstream 28300 13402634 ~ 13407007 (+)
AMCG00021262 LOC101466695,LOC100711741,LOC108231179,LOC106514543,LOC106949970,LOC106920031 coding upstream 57872 13358258 ~ 13377435 (+)
AMCG00021256 NA coding upstream 985549 12442215 ~ 12449758 (+)
AMCG00021255 NA coding upstream 1239527 12186009 ~ 12195780 (+)
AMCG00021263 taf7l,taf7 coding downstream 5377 13442785 ~ 13447518 (+)
AMCG00021266 LOC107740154 coding downstream 11188 13448596 ~ 13454852 (+)
AMCG00021277 NA coding downstream 149486 13586894 ~ 13599015 (+)
AMCG00021276 NA coding downstream 185441 13622849 ~ 13630470 (+)
AMCG00021275 NA coding downstream 212855 13650263 ~ 13662469 (+)
G84837 NA non-coding upstream 373544 13056182 ~ 13061763 (+)
G84825 LOC107690093,LOC107593228,LOC107740173,LOC107680956,LOC107554828 non-coding upstream 596098 12800829 ~ 12839209 (+)
G84803 NA non-coding upstream 1097100 12337997 ~ 12338207 (+)
G84801 NA non-coding upstream 1098168 12336802 ~ 12337139 (+)
G84759 NA non-coding upstream 1333964 12101131 ~ 12101343 (+)
G84923 NA non-coding downstream 134363 13571771 ~ 13572447 (+)
G84936 nox1,LOC106611713 non-coding downstream 162797 13600205 ~ 13601928 (+)
G84938 NA non-coding downstream 166450 13603858 ~ 13604159 (+)
G84962 NA non-coding downstream 243529 13680937 ~ 13685245 (+)
G85006 NA non-coding downstream 424262 13861670 ~ 13862498 (+)
G84749 NA other upstream 1334600 12075345 ~ 12100707 (+)
G84657 slitrk2,LOC106611993,LOC106604961,LOC107688026,LOC107588360 other upstream 2448133 10963148 ~ 10987174 (+)
AMCG00021240 LOC107742636 other upstream 2715980 10470063 ~ 10719327 (+)
G84425 NA other upstream 4011888 9416267 ~ 9423419 (+)
G84301 NA other upstream 4801897 8631727 ~ 8633410 (+)
AMCG00021296 NA other downstream 578725 14016133 ~ 14033557 (+)
AMCG00021292 NA other downstream 631922 14069330 ~ 14073125 (+)
AMCG00021349 mmgt1,tmm32,LOC107658091,LOC107560676,LOC102787804 other downstream 1991069 15428477 ~ 15432364 (+)
AMCG00021373 ubl3b,LOC107658069,LOC107707244,LOC108432919,LOC101472018,LOC107092570,LOC105029324,LOC100692344,LOC103390851 other downstream 2626091 16063499 ~ 16073621 (+)
G85764 LOC103366846,LOC106930986 other downstream 3152773 16590181 ~ 16592973 (+)

Expression


Co-expression Network