AMCG00021349 (mmgt1,tmm32,LOC107658091,LOC107560676,LOC102787804)


Basic Information

Item Value
gene id AMCG00021349
gene name mmgt1,tmm32,LOC107658091,LOC107560676,LOC102787804
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 15428477 ~ 15432364 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00021349
ggttgAAGATGGCTTCCTCGGTATGGAAGGGGCTCGTCGGGGTCGGTCTCTTCGCTTTAGCCCATGCAGCTTTCTCAGCGGCTCAGCATCGATCTTACATGCGACTAACAGAAAAGGAGAATGAAACACTACCAATAGATATAGTACTTCAGACATTGCTGGCCTTTGTAGTAACCTGCTATGGCATTGTGCACATTGCCGGGGAATTTAAAGACATGGATGCCACGTCGGAGCTCAAAAACAAGACGTTcgacacactgaggaaccatccttccTTTTATCTTTTCAATCATCGGGGCAGAGTGCTCTTCCGATCCCCTGATCAGGAGCAGAACACCGCTGTCCCTAACATGCAGGCGCTCCCCACTAATCCAATGCGGCTACGGAAACTGGAGCCCTCCCAGCACTGA
>TU106595
CCGCATTGGCAGCCTTCTCCCGacagctctctccctctctctctgtggttgAAGATGGCTTCCTCGGTATGGAAGGGGCTCGTCGGGGTCGGTCTCTTCGCTTTAGCCCATGCAGCTTTCTCAGCGGCTCAGCATCGATCTTACATGCGACTAACAGAAAAGGAGAATGAAACACTACCAATAGATGACGTTcgacacactgaggaaccatccttccTTTTATCTTTTCAATCATCGGGGCAGAGTGCTCTTCCGATCCCCTGATCAGGAGCAGAACACCGCTGTCCCTAACATGCAGGCGCTCCCCACTAATCCAATGCGGCTACGGAAACTGGAGCCCTCCCAGCACTGAGACTGTCTTATCCTGATTATGATAGTTTTTCCTGTTAAAGAAGAATTCAACtcgaaagagaaaaaaaatcttaacagctatatgaaataaaaacaattctctctctatctctgtatatatatatatatatatatatatatataaatgcatacatacatgtgtatatgtatgtatatatatatatatatatatatatatatatatatataatgtgtgctGTACTAATTTTGCATCACGTTCACTATACCAATCTTGTACTCTTTGGACTGTGCCAACTCCGTGCTTTCAGGGGTGTCTTGCTTGTAAATAAAGGTTTGTTTGCTTGGATTATGGAGTAACTGAACTTCCACCCCCCTCCAGCAGTAACTCAATTTATCCAGgatatgattaatttattatctCACTGCCTTCATGTCCAAACCTTTAACTTACAGATATTTTATCCATGCAGCTGTGTTGACTGTCCTGtagattgtttttttcacaacagCCAAGCAAATGTGATGTAAAGTTTCAGTACAGGAATTGTAAGCAGTTTTCTGTTTAGAGAGAGAATGGTTTTATTGATTTGGACATTGCAATCCAGTAGCTCTAGTCTTATGTAATATTGTTCATTGCAAAGCATAAGAAAACCAGTCCACGGTGATCCTAGTTGGGGGTACAGAAGCGTGACTGTAAATTATGCTGTGGAAAGTAAGATGAGGAAACACCTACTTTGGGGGGGagaatgttttgtgttgtttttgttttttcttccttaaatttatgtaaaaataaaatgcatctgaCCATTTTTAACTAACTAAAGTCAgttttgagattttgtttttataattattgattgaaaaataaaggaatgttATCCAAA

Function

symbol description
mmgt1 Predicted to enable magnesium ion transmembrane transporter activity. Predicted to contribute to membrane insertase activity. Predicted to be involved in magnesium ion transport; protein insertion into ER membrane by stop-transfer membrane-anchor sequence; and tail-anchored membrane protein insertion into ER membrane. Predicted to be integral component of endoplasmic reticulum membrane. Predicted to be part of EMC complex. Predicted to be active in Golgi apparatus; early endosome; and plasma membrane. Orthologous to human MMGT1 (membrane magnesium transporter 1).

GO:

id name namespace
GO:0034220 ion transmembrane transport biological_process
GO:0015693 magnesium ion transport biological_process
GO:0000139 Golgi membrane cellular_component
GO:0031901 early endosome membrane cellular_component
GO:0072546 endoplasmic reticulum membrane protein complex cellular_component
GO:0015095 magnesium ion transmembrane transporter activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00021349 False 410 mRNA 0.51 4 15428523 15431448
TU106595 True 1220 lncRNA 0.38 4 15428477 15432364

Neighbor

gene id symbol gene type direction distance location
AMCG00021346 NA coding upstream 48354 15353756 ~ 15380123 (+)
AMCG00021348 NA coding upstream 92815 15325459 ~ 15335662 (+)
AMCG00021340 NA coding upstream 238386 15157183 ~ 15190091 (+)
AMCG00021337 rbmx coding upstream 273573 15150163 ~ 15154904 (+)
AMCG00021339 NA coding upstream 305514 15121710 ~ 15122963 (+)
AMCG00021350 mospd1,LOC107601124,LOC107560686,LOC107744569 coding downstream 36139 15468503 ~ 15474502 (+)
AMCG00021354 LOC105026395,LOC107751966,LOC105912120,LOC107601099,LOC103357578,LOC100696750 coding downstream 114917 15547281 ~ 15553002 (+)
AMCG00021359 NA coding downstream 139186 15571550 ~ 15599716 (+)
AMCG00021358 NA coding downstream 202275 15634639 ~ 15644985 (+)
AMCG00021360 NA coding downstream 221380 15653744 ~ 15660257 (+)
G85412 NA non-coding upstream 17867 15405776 ~ 15410610 (+)
G85380 NA non-coding upstream 167512 15256448 ~ 15260965 (+)
G85381 NA non-coding upstream 169015 15257959 ~ 15259462 (+)
G85345 NA non-coding upstream 300512 15127289 ~ 15127965 (+)
G85344 NA non-coding upstream 301244 15126767 ~ 15127233 (+)
G85426 ddx26b,ints6l,LOC107658008 non-coding downstream 13947 15446311 ~ 15566826 (+)
G85440 NA non-coding downstream 54878 15487242 ~ 15529672 (+)
G85455 NA non-coding downstream 129381 15561745 ~ 15562917 (+)
G85497 NA non-coding downstream 143185 15575549 ~ 15576518 (+)
G85507 NA non-coding downstream 320718 15753082 ~ 15755432 (+)
AMCG00021292 NA other upstream 1355352 14069330 ~ 14073125 (+)
AMCG00021296 NA other upstream 1394920 14016133 ~ 14033557 (+)
AMCG00021267 timm8a,LOC107593201 other upstream 1991069 13435307 ~ 13437408 (+)
G84749 NA other upstream 3327770 12075345 ~ 12100707 (+)
G84657 slitrk2,LOC106611993,LOC106604961,LOC107688026,LOC107588360 other upstream 4441303 10963148 ~ 10987174 (+)
AMCG00021373 ubl3b,LOC107658069,LOC107707244,LOC108432919,LOC101472018,LOC107092570,LOC105029324,LOC100692344,LOC103390851 other downstream 631135 16063499 ~ 16073621 (+)
G85764 LOC103366846,LOC106930986 other downstream 1157817 16590181 ~ 16592973 (+)
G85787 NA other downstream 1224280 16656644 ~ 16714038 (+)
G85869 NA other downstream 1565513 16997877 ~ 17004131 (+)
AMCG00021441 NA other downstream 2037961 17470325 ~ 17473396 (+)

Expression


Co-expression Network