G85426 (ddx26b,ints6l,LOC107658008)


Basic Information

Item Value
gene id G85426
gene name ddx26b,ints6l,LOC107658008
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 15446311 ~ 15566826 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU106624
CCTTGTTTAAAAGTGCGATTTGGAAGCCAGCAAACTCCTTGAAGTTGATGTCTGTGAGCCGGAGAGGCGTCTCTCCAGTTATgccctgcaggagctgtttGAAGTCCTTGCGGTGGGCCAGGGAAAGTGCATTGGAGTGGTTCTTTACTTTGATGCCAGTTTCCTGAGGGGGCTTTTTACCCACAGACACAATAAGCCGGTCAGACTCTATTTTTTACCTGCTGGCTGAGCTTCTTGAGATAGGAGATGACACTGTAGCTGAGGCCACAGTCCATGTTATCCGAGATGAGACTGGGAGCTCCCATCATCCTCAGTGCTTTCTTCAGTGGCTGCAAAGACGTGTCAGGAAAGGCAACAGAGCACGGGAGAccgagagatggagagagagacgaaAGCAgaggaagataaaaaaaaaaaaaaaaaacttttTGGATAATACAATACTGAAATGGATGCAATGCTACTTCAGTCAGGTCATCAAAGCATGAACTCAGGTCTGAGTGGGAGTTTTTATTGCACTAACCTAAAACCCCAGGTTCAGGGTGCAATTGGtaaaagaaacattacatatgGCAGGGGGGCAATACATCAACACACAGTTTTTCATCTCCCATTTCAATCAGTGTAATAAAGGACTGACATTGGAGGAGTGTGCTTTTAGggctagttaaaaaaaataaggtgCAATTTCCACATCATTTTACAGAGATGTGGCCTGTCCAATTGTTTATATGTCTGCAACAGCCATTTTGATGGCACCTTGTGGAGAATTTAGCTGGTGGTGTAAAAGTTTTGCAGTGGGATGGGACCTACACAAATTTGGTCatgaaatagttttgttttgtcttgtcttgttCTCCACTTCTACTTGTTAGGGAAGTGCAGTCTGCAACCCTCAACAAAAATTAATGACTAATTAGGAGTTAAAATGGGTTGGCAAGCATGCGGGCACTCAGgcgaatacacacacacgcacgcacgcacgtaCGCACGCCTGAAGTGATATACATAGAATGCACAGCAGTCAACTCGGCtcatatatttatagattaCTACAGAGCTGTCTCGCTGGAAACAAGAGGAGCTCTGTTCCCTAAAATTATTGTGCAATTATGAAAGACAAGAAAGGCATCATTCAATTTGGCTTGAAGAAGGAAACGACAACATGGGACGAGAAGATTGTCATGGTCAATTTGTAACCATGTCAGCATCCCACAGCcgatatttcatttttgtctcgaagacattttaaacattcattcaatcattgtaacattaaaaaatatataaatagtcaAAATTATAAAAAGCTATTTCACTAAAATGTAAGTACTGTACTACCATAATTTTAACCTAAATGAAGTCTATCTGAGGCAGAGTTGAAACGCAAAGGCAAAGTCTAGTGCCTGATTGttctcatacatacacacaaggAAGAAGGCCTTCACAGTTAATTTACAGAAagccttttttttTGTCTTAGTT
>TU106625
GCCTGTTTTCCATTCCCTAACTGCGCAATAGTGTTATTCTGAGTCAATGTAATCTATAGTATTCCTCTCTAAACTGGCATCAGATATTCATATCTTCTGCTTCCATTTCTGTCAAAAACAATACTACATATCCTAATATAGTGTGTACACATACTGGTTGATcagttgtgtttgtgctgtCCTCTTCATCACATTGTCATGGTGTAACTCCTCTGAGTGCCAGTGGCTCCAGCACAGTGCTCCACATGTCCCAGATGTTGTTACATTGTGAATTTTATTGGTATAAGGATCGTCTGTGGGTGCACCCATAAAATACACCCACAAGATGTGCAATtccacattttaattcatttcaattttaaaaaaacaaaagtgcatggaataataatttatatacagaTAGGACCCCCTGATGGAACATTGTATAACAAAGctgcccaaaaaaaaaagaacttttTGGATAATACAATACTGAAATGGATGCAATGCTACTTCAGTCAGGTCATCAAAGCATGAACTCAGGTCTGAGTGGGAGTTTTTATTGCACTAACCTAAAACCCCAGGTTCAGGGTGCAATTGGtaaaagaaacattacatatgGCAGGGGGGCAATACATCAACACACAGTTTTTCATCTCCCATTTCAATCAGTGTAATAAAGGACTGACATTGGAGGAGTGTGCTTTTAGggctagttaaaaaaaataaggtgCAATTTCCACATCATTTTACAGAGATGTGGCCTGTCCAATTGTTTATATGTCTGCAACAGCCATTTTGATGGCACCTTGTGGAGAATTTAGCTGGTGGTGTAAAAGTTTTGCAGTGGGATGGGACCTACACAAATTTGGTCatgaaatagttttgttttgtcttgtcttgttCTCCACTTCTACTTGTTAGGGAAGTGCAGTCTGCAACCCTCAACAAAAATTAATGACTAATTAGGAGTTAAAATGGGTTGGCAAGCATGCGGGCACTCAGgcgaatacacacacacgcacgcacgcacgtaCGCACGCCTGAAGTGATATACATAGAATGCACAGCAGTCAACTCGGCtcatatatttatagattaCTACAGAGCTGTCTCGCTGGAAACAAGAGGAGCTCTGTTCCCTAAAATTATTGTGCAATTATGAAAGACAAGAAAGGCATCATTCAATTTGGCTTGAAGAAGGAAACGACAACATGGGACGAGAAGATTGTCATGGTCAATTTGTAACCATGTCAGCATCCCACAGCcgatatttcatttttgtctcgaagacattttaaacattcattcaatcattgtaacattaaaaaatatataaatagtcaAAATTATAAAAAGCTATTTCACTAAAATGTAAGTACTGTACTACCATAATTTTAACCTAAATGAAGTCTATCTGAGGCAGAGTTGAAACGCAAAGGCAAAGTCTAGTGCCTGATTGttctcatacatacacacaaggAAGAAGGCCTTCACAGTTAATTTACAGAAagccttttttttTGTCTTAGTT

Function

symbol description
ints6l Predicted to be involved in snRNA 3'-end processing. Predicted to be located in nucleus. Predicted to be part of integrator complex. Orthologous to several human genes including INTS6L (integrator complex subunit 6 like).
ddx26b ATP-dependent RNA helicase DDX26B

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU106624 False 1485 lncRNA 0.41 4 15446311 15566826
TU106625 True 1513 lncRNA 0.38 2 15515453 15566826

Neighbor

gene id symbol gene type direction distance location
AMCG00021346 NA coding upstream 66188 15353756 ~ 15380123 (+)
AMCG00021348 NA coding upstream 110649 15325459 ~ 15335662 (+)
AMCG00021340 NA coding upstream 256220 15157183 ~ 15190091 (+)
AMCG00021337 rbmx coding upstream 291407 15150163 ~ 15154904 (+)
AMCG00021339 NA coding upstream 323348 15121710 ~ 15122963 (+)
AMCG00021359 NA coding downstream 4724 15571550 ~ 15599716 (+)
AMCG00021358 NA coding downstream 67813 15634639 ~ 15644985 (+)
AMCG00021360 NA coding downstream 86918 15653744 ~ 15660257 (+)
AMCG00021361 LOC106586057,LOC106612107,LOC105026369 coding downstream 173909 15740735 ~ 15752170 (+)
AMCG00021366 NA coding downstream 213163 15779989 ~ 15784971 (+)
G85412 NA non-coding upstream 35701 15405776 ~ 15410610 (+)
G85380 NA non-coding upstream 185346 15256448 ~ 15260965 (+)
G85381 NA non-coding upstream 186849 15257959 ~ 15259462 (+)
G85345 NA non-coding upstream 318346 15127289 ~ 15127965 (+)
G85344 NA non-coding upstream 319078 15126767 ~ 15127233 (+)
G85497 NA non-coding downstream 8723 15575549 ~ 15576518 (+)
G85507 NA non-coding downstream 186256 15753082 ~ 15755432 (+)
G85552 NA non-coding downstream 353913 15920739 ~ 15922721 (+)
G85623 NA non-coding downstream 573697 16140523 ~ 16169886 (+)
G85674 NA non-coding downstream 722923 16289749 ~ 16292193 (+)
AMCG00021349 mmgt1,tmm32,LOC107658091,LOC107560676,LOC102787804 other upstream 13947 15428477 ~ 15432364 (+)
AMCG00021292 NA other upstream 1373186 14069330 ~ 14073125 (+)
AMCG00021296 NA other upstream 1412754 14016133 ~ 14033557 (+)
AMCG00021267 timm8a,LOC107593201 other upstream 2008903 13435307 ~ 13437408 (+)
G84749 NA other upstream 3345604 12075345 ~ 12100707 (+)
AMCG00021373 ubl3b,LOC107658069,LOC107707244,LOC108432919,LOC101472018,LOC107092570,LOC105029324,LOC100692344,LOC103390851 other downstream 496673 16063499 ~ 16073621 (+)
G85764 LOC103366846,LOC106930986 other downstream 1023355 16590181 ~ 16592973 (+)
G85787 NA other downstream 1089818 16656644 ~ 16714038 (+)
G85869 NA other downstream 1431051 16997877 ~ 17004131 (+)
AMCG00021441 NA other downstream 1903499 17470325 ~ 17473396 (+)

Expression


Co-expression Network