G85552


Basic Information

Item Value
gene id G85552
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 15920739 ~ 15922721 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU106784
GGGGACAGGCAGTATGCCTTCCCCCACCCCGGTCACCACAACATGCAGGCAGgctgagcacagagcagaggaaCAATACATAGGACCCTGAGTGGAGGACACAtgacacagaacacagaacccAGGAGCATAAAGAGCACAGACTACAAGAATGAAGGGCTCAGAGCTCAGAGCACAGAGCCCTATCTCTGTCCCCCATCAGGGCCAGTAAAGCTATACTCAGCAGGGACAAACACAAGCTTTCCTTACAAAATCTGAACTGAGGACGACCTGTTCTTGCAGTACCGCTCCCCCCTCACCTAAGCCTTTCAGATCGATTTCCTGTTCAGATACGATCTGGCCGTTGTTTGCCAGCAGCTTGGTGTGAAGGTTATAGAACTTGGAGATGTACTGCATCCTGCAGCCCACCCTGTAGCCCTCCTGCTGCAGGTACTTAGGGCACTCCATGAAGTCCCTTTTCTCTAGTCTGCTCTGGAAGCTGTAGTTGAAGTCGGGGCGTCCGTTCTCATTCCAGGTACAGCGCACATATTCCTCGTTGGGGATCAGGCAGCTCACACCTGCACAGGGGATCAGAACTCAGTTTTAATCATTACTGGTGAAACTGTGAattaagaatacaaaaacatatacatgcaGACATACATACTAATACAGACATgg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU106784 True 660 lncRNA 0.50 2 15920739 15922721

Neighbor

gene id symbol gene type direction distance location
AMCG00021369 NA coding upstream 11183 15898157 ~ 15909556 (+)
AMCG00021371 rap2c,LOC100691801,LOC106515678,LOC107751959,LOC106676304 coding upstream 29593 15890880 ~ 15891146 (+)
AMCG00021362 mbnl3,LOC107560839,LOC107661388,LOC107658075,LOC107751960,LOC107707252,LOC108444474 coding upstream 67081 15836526 ~ 15853658 (+)
AMCG00021363 NA coding upstream 86298 15827604 ~ 15834441 (+)
AMCG00021365 LOC101469993,LOC103374067,LOC102309869 coding upstream 128590 15790737 ~ 15792149 (+)
AMCG00021368 NA coding downstream 4939 15927660 ~ 15931593 (+)
AMCG00021367 NA coding downstream 12715 15935436 ~ 15939300 (+)
AMCG00021370 LOC107752047 coding downstream 58360 15981081 ~ 15987612 (+)
AMCG00021374 snx12,LOC107673821,LOC107733510,LOC107557076 coding downstream 88473 16011194 ~ 16016920 (+)
AMCG00021372 NA coding downstream 99637 16022358 ~ 16037784 (+)
G85507 NA non-coding upstream 165307 15753082 ~ 15755432 (+)
G85497 NA non-coding upstream 344221 15575549 ~ 15576518 (+)
G85426 ddx26b,ints6l,LOC107658008 non-coding upstream 353913 15446311 ~ 15566826 (+)
G85455 NA non-coding upstream 357822 15561745 ~ 15562917 (+)
G85440 NA non-coding upstream 391067 15487242 ~ 15529672 (+)
G85623 NA non-coding downstream 217802 16140523 ~ 16169886 (+)
G85674 NA non-coding downstream 367028 16289749 ~ 16292193 (+)
G85746 NA non-coding downstream 624936 16547657 ~ 16549345 (+)
G85757 NA non-coding downstream 646726 16569447 ~ 16569650 (+)
G85758 NA non-coding downstream 649472 16572193 ~ 16572868 (+)
AMCG00021349 mmgt1,tmm32,LOC107658091,LOC107560676,LOC102787804 other upstream 488375 15428477 ~ 15432364 (+)
AMCG00021292 NA other upstream 1847614 14069330 ~ 14073125 (+)
AMCG00021296 NA other upstream 1887182 14016133 ~ 14033557 (+)
AMCG00021267 timm8a,LOC107593201 other upstream 2483331 13435307 ~ 13437408 (+)
G84749 NA other upstream 3820032 12075345 ~ 12100707 (+)
AMCG00021373 ubl3b,LOC107658069,LOC107707244,LOC108432919,LOC101472018,LOC107092570,LOC105029324,LOC100692344,LOC103390851 other downstream 140778 16063499 ~ 16073621 (+)
G85764 LOC103366846,LOC106930986 other downstream 667460 16590181 ~ 16592973 (+)
G85787 NA other downstream 733923 16656644 ~ 16714038 (+)
G85869 NA other downstream 1075156 16997877 ~ 17004131 (+)
AMCG00021441 NA other downstream 1547604 17470325 ~ 17473396 (+)

Expression


Co-expression Network