AMCG00021459 (ogt.1,ogt)


Basic Information

Item Value
gene id AMCG00021459
gene name ogt.1,ogt
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 18196137 ~ 18226215 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00021459
CCGCCATTTCAGGATAGCCTAGGCGCTTTTTTGTCGATTCGAGTGATGCATATGTAAAGTTTATCGAAATAGACGAGGGAAGAGCGAGTTTTCCATATCAACagagaataaaaaacagcaaacaggCAAAGCGGTGTACTTCGTTTAATTGGGAAATCTAGACAACGCGTTGTGTTGGTTAAAGAGTGTGTAGTAACTATTCAAGACCGTAGCACAAAGCAGGACTGACATCGCCGTCCTGTTtctgtattcataataatagATTATCAGTTCCAATTACGGCTGCAtacgttgttttttttgtttttgtttttttttaattattaaaaaaccaTTACTCGATTTCTCTgagtataaattatatttttttaacatttatttcgTGCTAAAGTTACAAACGTGGATATGGCGAGTTCCGTTGGAAACGTGGCTGACAGTACAGAACCGACAAAACGTATGCTTTCCTTCCAAGGGTTGGCAGAGCTGGCTCACCGAGAGTACCAGTCTGGAGACTTCGAGGCGGCCGAGCGCCATTGCATGCAGCTGTGGCGGCAGGAGCCGGACAACACTggggtgctgctgctgctctcctcCATTCACTTCCAGTGCCGCCGACTGGACAGGTCGGCTCACTTTAGCACCCTGGCCATCAAGCAGAACCCCATGCTGGCTGAGGCCTACTCCAACCTGGGTAACGTGTACAAGGAACGTGGGCAGCTGCAGGAGGCCATTGAGCACTACCGCCATGCCCTGCGGCTCAAGCCCGACTTCATCGATGGCTACATCAACCTGGCTGCCGCGCTGGTGGCAGCTGGAGACATGGAGGGTGCCGTGCAGGCCTATGTGTCTGCCCTGCAGTACAACCCGGATCTATATTGTGTGCGCAGTGACCTGGGGAACCTTCTCAAAGCTCTCGGGCGTCTGGAAGAGGCCAAGGCCTGTTACCTGAAAGCCATCGAGACGCAACCCAACTTTGCAGTGGCTTGGAGTAACCTGGGTTGTGTGTTCAATGCCCAGGGGGAGATCTGGCTGGCTATTCACCACTTTGAGAAGGCTGTGACTCTGGATCCTAATTTTCTGGATGCCTACATTAACCTGGGCAACGTCCTGAAGGAGGCTCGCATCTTTGACAGGGCTGTGGCAGCCTACTTGCGAGCCCTGAGCCTGAGTCCGAACCACGCAGTCGTCCATGGCAACCTGGCCTGCGTGTACTACGAGCAGGGCCTGATTGACCTGGCCATCGACACGTACCGCCGTGCCATCGAGCTGCAGCCCCACTTCCCTGATGCCTACTGCAATCTAGCCAACGCCCTGAAGGAGAAGGGCAATgtgtCAGAGGCAGAGGAGTGCTACAACACGGCGCTCCGGCTGTGCCCCACGCACGCCGACTCGCTCAACAACCTGGCCAACATCAAGAGGGAGCAGGGCAACATCGAGGAGGCTGTACAGCTGTACCGGAAGGCCCTGGAGGTGTTCCCGGAGTTTGCAGCGGCTCACTCAAACTTGGCCAGCGTGTTGCAGCAACAGGGCAAACTGCAGGAGGCGCTTATGCACTACAAGGAGGCCATAAGGATCAGCCCCACGTTTGCAGATGCCTACTCCAACATGGGCAACACATTGAAGGAGATGCAGGACGTGCAGGGGGCGCTGCAGTGCTACACACGTGCCATCCAGATCAACCCTGCCTTTGCCGATGCGCATAGCAACCTGGCCTCCATCCACAAGGACTCGGGCAACATACCAGAAGCGATTGCATCTTATCGCACGGCCCTGAAGCTGAAGCCGGACTTCCCCGATGCCTACTGCAACTTGGCTCATTGCCTGCAGATTGTGTGCGACTGGACAGACTATGATGAGCGCATGAAGAAGCTGGTGAGCATCGTGGCTGACCAGCTGGACAAGAACCGGCTGCCCTCGATCAACGTCCTGCACAAGCCACCTTATGAGCACCCCAAGGACCTGAAGGCCAGTGGGGGGCGCCTGCGCATTGGCTACGTCAGCTCAGACTTTGGGAACCATCCCACCTCACACCTTATGCAGTCCATCCCTGGCATGCACAACTCAGAGAGGTTTGAGGTGTTCTGCTATGCACTCAGCCCTGACGACGGCACTAACTTCCGAGTGAAGGTGATGGCTGAGGCTAACCACTTCACAGACCTGTCCCAGATCCCTTGCAATGGAAAGGCTGCCGACCGGATCCACCAGGATGGTGTCCACATCCTGGTCAACATGAATGGCTACACCAAGGGGGCACGCAACGAGCTGTTTGCCCTGCGGGCTGCACCTATCCAGGCGATGTGGTTGGGTTACCCTGGCACCAGTGGGGCACCCTTCATGGATTACATCATCTCTGACAAGGAGACTTCCCCACTGGATGTGGCGGAGCAGTACTCGGAGAAGCTGGCTTACATGCCCAACACCTTCTTTATTGGAGACCACGCTAACATGTTCCCCCACCTCAAGAAGAAGGCAGTGATCGACTTCAAGTCCAACGGGCACATCTTTGACAATCGCATCGTGCTGAACGGCATCGACCTTAAGGCTTTTCTGGACAGCCTGCCTGACGTCAAGGTGGTGAAGCTGAAGTGTGATGGGCAGGAGAACTCAGACAGTAACTCAGCCCTGTCAATGCCCGTCATCCCCATGAACACAGCAGCTGAGGCCATCATCAACATGATCAACCAGGGCCAGATCCAGGTCACCATCAACGGCTTCACTGTGAGCAATGGGCTGGCCACCACACAGATCAATAACAAGGCAGCAACAGGGGAGGAGGTACCGCGAACCATCATTGTGACGACGCGCTCACAATACGGACTCCCTGAGGACGCCATCGTCTACTGCAACTTCAACCAGCTCTACAAGATCGACCCCCCCACGCTGCAGATGTGGGCCAATATCCTGAAGCGTGTGCCCAACAGTGTGCTGTGGCTGCTGCGGTTCCCAGCAGTGGGTGAGCCCAACATCCAGCAGTACGCTCAGAGCATGGGCCTACCTGCCAGCCGCATTGTGTTCTCACCCGTGGCGCCCAAGGAGGAGCATGTGCGCCGTGGGCAGCTGGCTGATGTATGCCTGGACACACCTCTCTGCAACGGCCACACCACTGGCATGGACGTTCTCTGGGCCGGTACCCCCATGGTCACGATGCCAGGCGAGACTCTGGCATCGCGAGTGGCCGCCTCCCAGCTCACCTGCCTGGGTTGCACTGAGCTGATAGCCATGAACCGTCAGGACTATGAGGATGTGGCTGTCAAGCTGGGCACTGACATGGAATTCCTGAAGAAAATCCGAGCGAAAGTGTGGAAGCAGCGCATCTGCAGTCCACTGTTCAACACCAAGCAGTACACCATGGACCTGGAGAAGCTGTACCTGCAGATGTGGGAGCACTACGCCACGGGGGGCAAGCCTGAGCACCTGTTCAAACTGCAGGCCCTGGAGAGCAGCGAGACCGCCTGA

Function

symbol description
ogt.1 Enables protein N-acetylglucosaminyltransferase activity. Acts upstream of or within protein O-linked glycosylation. Predicted to be located in mitochondrial membrane. Is expressed in brain; caudal fin; and trunk. Human ortholog(s) of this gene implicated in non-syndromic X-linked intellectual disability 106. Orthologous to human OGT (O-linked N-acetylglucosamine (GlcNAc) transferase).
ogt Enables phosphatidylinositol-3,4,5-trisphosphate binding activity; protein N-acetylglucosaminyltransferase activity; and protein O-GlcNAc transferase activity. Involved in several processes, including histone modification; regulation of cellular protein metabolic process; and regulation of nucleobase-containing compound metabolic process. Located in cytosol; nucleoplasm; and plasma membrane. Part of histone acetyltransferase complex and protein N-acetylglucosaminyltransferase complex. Implicated in non-syndromic X-linked intellectual disability 106. Biomarker of aortic valve stenosis.

NR:

description
O-linked N-acetylglucosamine (GlcNAc) transferase (UDP-N-acetylglucosamine:polypeptide-N-acetylglucosaminyl transferase)

GO:

id name namespace
GO:0006493 protein O-linked glycosylation biological_process
GO:0016262 protein N-acetylglucosaminyltransferase activity molecular_function

KEGG:

id description
K09667 OGT; protein O-GlcNAc transferase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00021459 True 3456 mRNA 0.55 22 18196137 18226215

Neighbor

gene id symbol gene type direction distance location
AMCG00021456 NA coding downstream 30470 18153005 ~ 18165667 (-)
AMCG00021457 NA coding downstream 47587 18109618 ~ 18148550 (-)
AMCG00021458 NA coding downstream 86968 18097892 ~ 18109169 (-)
AMCG00021452 NA coding downstream 137971 18051992 ~ 18058166 (-)
AMCG00021449 NA coding downstream 513029 17638400 ~ 17683108 (-)
AMCG00021461 NA coding upstream 6356 18232571 ~ 18240579 (-)
AMCG00021462 NA coding upstream 22803 18249018 ~ 18279785 (-)
AMCG00021464 LOC101062031,LOC105905861,LOC108413288,LOC106612212 coding upstream 250857 18477072 ~ 18477944 (-)
AMCG00021468 NA coding upstream 339889 18566104 ~ 18575434 (-)
AMCG00021469 NA coding upstream 368927 18595142 ~ 18608153 (-)
G86029 NA non-coding downstream 562151 17633755 ~ 17633986 (-)
G86013 NA non-coding downstream 663308 17532608 ~ 17532829 (-)
G86012 NA non-coding downstream 668998 17526753 ~ 17527139 (-)
G86000 NA non-coding downstream 682517 17513197 ~ 17513620 (-)
G85985 NA non-coding downstream 719233 17476704 ~ 17476904 (-)
G86154 NA non-coding upstream 97276 18323491 ~ 18324025 (-)
G86203 NA non-coding upstream 323229 18549444 ~ 18549757 (-)
G86222 NA non-coding upstream 366425 18592640 ~ 18631467 (-)
G86225 NA non-coding upstream 396348 18622563 ~ 18623590 (-)
G86240 NA non-coding upstream 433083 18659298 ~ 18663129 (-)
G86049 NA other downstream 269429 17926099 ~ 17926708 (-)
AMCG00021444 NA other downstream 610696 17581242 ~ 17585441 (-)
G86010 NA other downstream 643371 17547162 ~ 17552766 (-)
G85953 NA other downstream 772719 17419604 ~ 17423418 (-)
AMCG00021435 hdx,LOC107572093 other downstream 892667 17286249 ~ 17303470 (-)
AMCG00021460 rhog,LOC101076287,LOC107396352,LOC104923191,LOC105923887 other upstream 15022 18241237 ~ 18248894 (-)
G86241 NA other upstream 595318 18821533 ~ 18909908 (-)
AMCG00021483 NA other upstream 1033219 19259434 ~ 19274440 (-)
G86327 NA other upstream 1049139 19275354 ~ 19278023 (-)
AMCG00021495 acbd7,LOC106595206 other upstream 1219871 19446086 ~ 19468782 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000000_18815522_18834911 OGT, OGT.1 coding CI01000000 null 18815473 ~ 18834911 (-)