AMCG00021464 (LOC101062031,LOC105905861,LOC108413288,LOC106612212)


Basic Information

Item Value
gene id AMCG00021464
gene name LOC101062031,LOC105905861,LOC108413288,LOC106612212
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 18477072 ~ 18477944 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00021464
ATGGCCCTGCCAGATAACTCCAGTGTTGCCATGCCAGGGGAGGAGCTGTCCTTCCCCGATATCGTGGAGCTGAATGTAGGCGGCCAGGTGTACATCACCCGCTACTCCACCCTTACCAGCGTGCCAGACTCACTACTCGGCGAGATGTTTGGACGCAAGAGCAGCAAGGGGCTGGCGCGGGACACCAAGGGCCGCTTCTTTGTGGACCGTGATGGCTTCCTGTTTCGCTACATCCTGGACTACATGCGCGACCAGATGCTGGTGCTACCTGACCACTTCCCTGAGCGCGGGCGGCTGCAGCGCGAAGCAGAGTTCTTCCAACTGCCCGAGCTGGTCAAGCTGCTGGCGCCCAAGATCAGCAAGCAGAACTCGCTTGGGGATGATGGTTGCCAGAGTGACCCAGAGGACTCGTCCCCCAACGCTGACACGCTTCGTAACTTCTCCACTCTGGGCGGCACTGCTGCAGCCTGCGCCGGCCTAGCTTCCGGGGCTGGTGGGGTGGGTGGAGAGGGCCGACGCTCCGGCTTCATCACCATTGGCTACCGTGGCTCCTACACGCTGGGCCGTGATAGCCAAACCGATGCCAAGTTCCGGCGTGTGGCCAGGATTATGGTGTGTGGGAAGACCTCGCTGGCCAAGGAGGTGTTTGGAGACACACTGAATGAGAGCCGCGACCCCGACCGCCCCCCCGAGCGCTACACCTCCCGCTACTACCTGAAGTTCACCTTCCTGGAGCAGGCCTTTGACCGGCTGGCGGACGCTGGCTTCCATATGGTGGCCTGCAACTCCACGGGCACCTGCGCCTTTGCCCATGAGCAGACCGACGACAAGATCTGGACCAGCTACACCGAATATGTGTTCTACCGTGAGTGA

Function

NR:

description
PREDICTED: BTB/POZ domain-containing protein KCTD12-like

GO: NA

KEGG:

id description
K21918 KCTD8_12_16; BTB/POZ domain-containing protein KCTD8/12/16

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00021464 True 873 mRNA 0.62 1 18477072 18477944

Neighbor

gene id symbol gene type direction distance location
AMCG00021462 NA coding downstream 197287 18249018 ~ 18279785 (-)
AMCG00021461 NA coding downstream 236493 18232571 ~ 18240579 (-)
AMCG00021459 ogt.1,ogt coding downstream 250857 18196137 ~ 18226215 (-)
AMCG00021456 NA coding downstream 311405 18153005 ~ 18165667 (-)
AMCG00021457 NA coding downstream 328522 18109618 ~ 18148550 (-)
AMCG00021468 NA coding upstream 88160 18566104 ~ 18575434 (-)
AMCG00021469 NA coding upstream 117198 18595142 ~ 18608153 (-)
AMCG00021467 LOC107748936,LOC107689138,LOC107733406,LOC107663109 coding upstream 185279 18663223 ~ 18684421 (-)
AMCG00021471 LOC106604239 coding upstream 284984 18762928 ~ 18772587 (-)
AMCG00021470 nlgn3 coding upstream 319974 18797918 ~ 18809251 (-)
G86154 NA non-coding downstream 153047 18323491 ~ 18324025 (-)
G86029 NA non-coding downstream 843086 17633755 ~ 17633986 (-)
G86013 NA non-coding downstream 944243 17532608 ~ 17532829 (-)
G86012 NA non-coding downstream 949933 17526753 ~ 17527139 (-)
G86000 NA non-coding downstream 963452 17513197 ~ 17513620 (-)
G86203 NA non-coding upstream 71500 18549444 ~ 18549757 (-)
G86222 NA non-coding upstream 114696 18592640 ~ 18631467 (-)
G86225 NA non-coding upstream 144619 18622563 ~ 18623590 (-)
G86240 NA non-coding upstream 181354 18659298 ~ 18663129 (-)
G86244 NA non-coding upstream 272728 18750672 ~ 18811147 (-)
AMCG00021460 rhog,LOC101076287,LOC107396352,LOC104923191,LOC105923887 other downstream 228178 18241237 ~ 18248894 (-)
G86049 NA other downstream 550364 17926099 ~ 17926708 (-)
AMCG00021444 NA other downstream 891631 17581242 ~ 17585441 (-)
G86010 NA other downstream 924306 17547162 ~ 17552766 (-)
G85953 NA other downstream 1053654 17419604 ~ 17423418 (-)
G86241 NA other upstream 343589 18821533 ~ 18909908 (-)
AMCG00021483 NA other upstream 781490 19259434 ~ 19274440 (-)
G86327 NA other upstream 797410 19275354 ~ 19278023 (-)
AMCG00021495 acbd7,LOC106595206 other upstream 968142 19446086 ~ 19468782 (-)
AMCG00021514 NA other upstream 1803208 20281152 ~ 20284979 (-)

Expression


Co-expression Network