AMCG00021478 (calb1,LOC107704882,LOC107700706,LOC107588486)


Basic Information

Item Value
gene id AMCG00021478
gene name calb1,LOC107704882,LOC107700706,LOC107588486
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 19202878 ~ 19220274 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00021478
GATCAAAGCACCCCAGTCCGAGAGCACCAGCCCGCCCAGCAGCTTCTCCACACACCGGCGACATGGCCAACGCTTACCTACAAGGAGTGGAGATCTCTGCCACACAGTTTCTGGATATTTTTCGCCATTATGACAACGATGGCAATGGCTATATTGAAGGCAAGGAGCTGCAGAGCTTTATTAAAGAGCTCCAGCAAGCTCGAAAACAAGCAGGACTAgagttaacagatcaaatgaAGGCTTTTGTGGACAAGTATGGACAGAACGCCGATGGAAAGATAGGCATTGTGGAGCTCGTTCAGATATTGCCCACAGAAGAAAACTTCTTGTTATTTTTTCGGCAGCAGCTGAAGTCCTGTGCAGAGTTcatggaggCCTGGAGGAAGTATGATGCCGATCACAGCGGGTACATTGAGGCGGACGAACTGAAGCTGAAAATATTTGATTCCAACAATGACGGGAAGCTTTGCCTGGCAGAGATGGCAGGACTATTACCGGACCAGGAGAACTTTTTACTCAAGTTTCAGGGAGTCAAAATGCCAAGAAAAGAGTTCAACAAGATTTTTGAATTATACGATCAGGACGGTAATGGATACATGGACGAGAATGAGCTGGATGCCTTATTAAAAGACCTGTGTGAAAAAAACCAAAAGgTGTTAGACATCAACAATATCGCCACTTACAAGAAAGCTATCATGGCCTTGTCTGATGGGGGGAAGCTGTACAGAACCGAGCTGGCACTCGTCCTGTGTGCAGACGAGATCTGAGGCCCCGCCCAGTCAGCCCTCGCCCGCTAGTCATCTGTGTAAAGATAGCGACAGACTCCAGCCGTGTTCTACCagtccagtcctggggggccaccGTCGAGTCAGTTCTATAGGTCTCCTTAAACCAGCATCTGCAGGAGACCCAGTGAAGGGCCCAGTGGTCTCCGTTCAGAGAATCATCTGAGGAGTGAAAACCAGCAAGCGGCCCTCCGGGACTCGAGCTTTAGAACATTGCTGTAAGATgtgtttcccttttttctttttaatctgtaaatttTACTGACAGCGTATAGATACATCACTGGGACATGTGGCACATACTTTTCAACCTGTTGTTTCTATACTGTTTGTAATGTACAGCTTTTGTAATTATGAGATTATTACAACAATAAAGCACATATGCCTTGACTCTATGTTATATATTCTGTGATACACTATGATTATGAAGAGATGTGCACAGAGCTATATGTACTGCTAAAAAAATGACTATTTATAAACTGCGATATATTGACACCAGTAACAAATTCTGCCTGATAATATTTTAGCCAAAGCAATAAATTGTTACCAGAAGACATTGAGGTGAAGTGTATACTAACTGGGGGAATTACAGATTATGTACACCGACACTGTTCAGCTACATTTACGTTTGCAGTGCATGTTTATTGCTGAAGGCTACCCTTTCACTAAGGCATTAATTAAGAATGTAATCCACATTCCTCAATACTTTATTAGTACTGACATACCAGCCATGACTCACTCAGTCTTTAGAGGTATATCACACGATTTGCACTGGAGGAATGATGTGCTACACTGTGCTTTACACCAGACTCACTGTGCAACCTGTTATTAAAGTCTGAACACTACCTAACAAAGTCTCACTGTGTtgtggtgtaaaaaaaaatctgaaattaaactgaataaagtgtgcctgtgtg

Function

symbol description
calb1 Predicted to enable calcium ion binding activity. Predicted to be involved in regulation of long-term synaptic potentiation and regulation of presynaptic cytosolic calcium ion concentration. Predicted to act upstream of or within calcium ion homeostasis. Predicted to be active in several cellular components, including cytosol; dendritic spine; and terminal bouton. Orthologous to human CALB1 (calbindin 1).

NR:

description
PREDICTED: calbindin isoform X1

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
K14757 CALB1, CALB; calbindin

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00021478 True 1702 mRNA 0.44 10 19202878 19220274

Neighbor

gene id symbol gene type direction distance location
AMCG00021480 pnp4b,LOC107755717,LOC107700705,LOC107704990,LOC107705461,LOC107588484,LOC108437351,LOC108272756 coding upstream 22357 19164678 ~ 19180521 (+)
AMCG00021475 tmem64,LOC107743834,LOC107696193 coding upstream 83310 19107777 ~ 19119568 (+)
AMCG00021473 tmem55a,LOC107724355,LOC107702130 coding upstream 157028 19031291 ~ 19045850 (+)
AMCG00021466 rab9b,LOC103026314,LOC108436189 coding upstream 646478 18555792 ~ 18556400 (+)
AMCG00021465 NA coding upstream 662730 18488903 ~ 18540148 (+)
AMCG00021479 NA coding downstream 11854 19232128 ~ 19247678 (+)
AMCG00021484 NA coding downstream 79262 19299536 ~ 19307124 (+)
AMCG00021488 NA coding downstream 121546 19341820 ~ 19342824 (+)
AMCG00021491 NA coding downstream 163755 19384029 ~ 19391754 (+)
AMCG00021493 NA coding downstream 202450 19422724 ~ 19446623 (+)
G86284 NA non-coding upstream 49596 19153015 ~ 19153282 (+)
G86229 LOC106604239,LOC107733406,LOC107748936,LOC104952214 non-coding upstream 523002 18679113 ~ 18679876 (+)
G86227 LOC107748936,LOC107689138,LOC107733406,LOC107663109 non-coding upstream 538345 18663193 ~ 18664533 (+)
G86217 NA non-coding upstream 584322 18615170 ~ 18618556 (+)
G86202 NA non-coding upstream 653119 18549428 ~ 18549759 (+)
G86309 NA non-coding downstream 4179 19224453 ~ 19226768 (+)
G86323 NA non-coding downstream 38184 19258458 ~ 19258855 (+)
G86367 NA non-coding downstream 171823 19392097 ~ 19394874 (+)
G86387 NA non-coding downstream 228455 19448729 ~ 19449107 (+)
G86419 NA non-coding downstream 365715 19585989 ~ 19587369 (+)
AMCG00021472 NA other upstream 147775 19047049 ~ 19055103 (+)
G86121 NA other upstream 953192 18248490 ~ 18249686 (+)
AMCG00021441 NA other upstream 1729482 17470325 ~ 17473396 (+)
G85869 NA other upstream 2198747 16997877 ~ 17004131 (+)
G85787 NA other upstream 2488840 16656644 ~ 16714038 (+)
AMCG00021485 NA other downstream 59491 19279765 ~ 19294779 (+)
G86407 NA other downstream 279526 19499800 ~ 19501242 (+)
G86601 NA other downstream 1122336 20342610 ~ 20401249 (+)
AMCG00021517 gatad1 other downstream 1147879 20368153 ~ 20371536 (+)
G86616 NA other downstream 1158149 20378423 ~ 20380424 (+)

Expression


Co-expression Network